RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 NEK11Q8NG66 645 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 CPB2Q96IY4 423 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 TTYH3Q9C0H2 523 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 GRIN2DO15399 1336 aa29.17■■■□□ 2.26
MSX1-201ENST00000382723 LDHAP00338 332 aaKnown RBP29.17■■■□□ 2.26
MSX1-201ENST00000382723 SKILP12757 684 aa29.17■■■□□ 2.26
MSX1-201ENST00000382723 APBA1Q02410 837 aa29.17■■■□□ 2.26
MSX1-201ENST00000382723 ZNF568Q3ZCX4 644 aa29.17■■■□□ 2.26
MSX1-201ENST00000382723 C1orf220Q5T0J3 134 aa29.17■■■□□ 2.26
MSX1-201ENST00000382723 EEF1DP3Q658K8 133 aa29.17■■■□□ 2.26
MSX1-201ENST00000382723 MPZL3Q6UWV2 235 aa29.17■■■□□ 2.26
MSX1-201ENST00000382723 CRELD2Q6UXH1 353 aaPredicted RBP29.17■■■□□ 2.26
MSX1-201ENST00000382723 POP1Q99575 1024 aaKnown RBP29.17■■■□□ 2.26
MSX1-201ENST00000382723 UNC93B1Q9H1C4 597 aa29.17■■■□□ 2.26
MSX1-201ENST00000382723 PYCARDQ9ULZ3 195 aa29.17■■■□□ 2.26
MSX1-201ENST00000382723 CAPN11Q9UMQ6 739 aa29.17■■■□□ 2.26
MSX1-201ENST00000382723 LUC7L2Q9Y383 392 aaKnown RBP29.17■■■□□ 2.26
MSX1-201ENST00000382723 ABLIM1O14639 778 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 ERLIN2O94905 339 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 KRT9P35527 623 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 MCL1Q07820 350 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 PPP3CAQ08209 521 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 EXOC3L4Q17RC7 722 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 GBP6Q6ZN66 633 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 PARD3BQ8TEW8 1205 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 PRIMPOLQ96LW4 560 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 PTPRHQ9HD43 1115 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 AGPAT5Q9NUQ2 364 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 SCN10AQ9Y5Y9 1956 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 CNTNAP2Q9UHC6 1331 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 DLATP10515 647 aaKnown RBP29.16■■■□□ 2.26
MSX1-201ENST00000382723 SLC9A1P19634 815 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 PROZP22891 400 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 GCLMP48507 274 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 NOLC1Q14978 699 aaKnown RBP eCLIP29.16■■■□□ 2.26
MSX1-201ENST00000382723 SLC9C1Q4G0N8 1177 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 TAF2Q6P1X5 1199 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 GCNT4Q9P109 453 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 TNFSF13BQ9Y275 285 aa29.16■■■□□ 2.26
MSX1-201ENST00000382723 LRRIQ3A6PVS8 624 aaPredicted RBP29.15■■■□□ 2.26
MSX1-201ENST00000382723 MYL7Q01449 175 aa29.15■■■□□ 2.26
MSX1-201ENST00000382723 RBAKQ9NYW8 714 aaPredicted RBP29.15■■■□□ 2.26
MSX1-201ENST00000382723 TSPAN1O60635 241 aa29.14■■■□□ 2.26
MSX1-201ENST00000382723 CABYRO75952 493 aa29.14■■■□□ 2.26
MSX1-201ENST00000382723 ACTN1P12814 892 aa29.14■■■□□ 2.26
MSX1-201ENST00000382723 ARF4P18085 180 aaPredicted RBP29.14■■■□□ 2.26
MSX1-201ENST00000382723 ITGA7Q13683 1181 aa29.14■■■□□ 2.26
MSX1-201ENST00000382723 FIGNQ5HY92 759 aa29.14■■■□□ 2.26
MSX1-201ENST00000382723 NME8Q8N427 588 aa29.14■■■□□ 2.26
MSX1-201ENST00000382723 TMC2Q8TDI7 906 aa29.14■■■□□ 2.26
MSX1-201ENST00000382723 PANX2Q96RD6 677 aa29.14■■■□□ 2.26
MSX1-201ENST00000382723 TOPORSQ9NS56 1045 aaPredicted RBP29.14■■■□□ 2.26
MSX1-201ENST00000382723 ABHD10Q9NUJ1 306 aa29.14■■■□□ 2.26
MSX1-201ENST00000382723 ESPNB1AK53 854 aa29.14■■■□□ 2.25
MSX1-201ENST00000382723 MSNP26038 577 aaKnown RBP29.14■■■□□ 2.25
MSX1-201ENST00000382723 PON1P27169 355 aa29.14■■■□□ 2.25
MSX1-201ENST00000382723 TNFSF9P41273 254 aa29.14■■■□□ 2.25
MSX1-201ENST00000382723 SESTD1Q86VW0 696 aa29.14■■■□□ 2.25
MSX1-201ENST00000382723 GTPBP10A4D1E9 387 aaKnown RBP29.13■■■□□ 2.25
MSX1-201ENST00000382723 MOXD2PA6NHM9 499 aa29.13■■■□□ 2.25
MSX1-201ENST00000382723 OGTO15294 1046 aa29.13■■■□□ 2.25
MSX1-201ENST00000382723 NRDCO43847 1150 aa29.13■■■□□ 2.25
MSX1-201ENST00000382723 DARSP14868 501 aaKnown RBP29.13■■■□□ 2.25
MSX1-201ENST00000382723 HSP90AA2PQ14568 343 aaPredicted RBP29.13■■■□□ 2.25
MSX1-201ENST00000382723 USP37Q86T82 979 aa29.13■■■□□ 2.25
MSX1-201ENST00000382723 THNSL1Q8IYQ7 743 aa29.13■■■□□ 2.25
MSX1-201ENST00000382723 GLT1D1Q96MS3 346 aa29.13■■■□□ 2.25
MSX1-201ENST00000382723 BAG1Q99933 345 aaPredicted RBP29.13■■■□□ 2.25
MSX1-201ENST00000382723 CDT1Q9H211 546 aa29.13■■■□□ 2.25
MSX1-201ENST00000382723 PDZD7Q9H5P4 517 aa29.13■■■□□ 2.25
MSX1-201ENST00000382723 RBAK-RBAKDNI3L0D1 243 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 FAM189A1O60320 539 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 NOL4O94818 638 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 WNT7BP56706 349 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 MTFR1Q15390 333 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 PTGISQ16647 500 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 CATSPER4Q7RTX7 472 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 ARRDC4Q8NCT1 418 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 IQCDQ96DY2 449 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 TSEN34Q9BSV6 310 aaKnown RBP29.12■■■□□ 2.25
MSX1-201ENST00000382723 A0A1W2PQJ5 194 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 EIF4BP23588 611 aaKnown RBP29.12■■■□□ 2.25
MSX1-201ENST00000382723 OSTNP61366 133 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 PSMD6Q15008 389 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 CCDC112Q8NEF3 446 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 ZNF397Q8NF99 534 aaPredicted RBP29.12■■■□□ 2.25
MSX1-201ENST00000382723 TMEM40Q8WWA1 233 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 WNT8BQ93098 351 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 CCDC51Q96ER9 411 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 FNBP1Q96RU3 617 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 TMX1Q9H3N1 280 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 PDE11AQ9HCR9 933 aa29.12■■■□□ 2.25
MSX1-201ENST00000382723 TRIP12Q14669 1992 aaPredicted RBP29.11■■■□□ 2.25
MSX1-201ENST00000382723 STX10O60499 249 aa29.11■■■□□ 2.25
MSX1-201ENST00000382723 MCCD1P59942 119 aaPredicted RBP29.11■■■□□ 2.25
MSX1-201ENST00000382723 ZBED6P86452 979 aa29.11■■■□□ 2.25
MSX1-201ENST00000382723 SNX17Q15036 470 aa29.11■■■□□ 2.25
MSX1-201ENST00000382723 CACNA2D4Q7Z3S7 1137 aa29.11■■■□□ 2.25
MSX1-201ENST00000382723 SERINC5Q86VE9 423 aa29.11■■■□□ 2.25
MSX1-201ENST00000382723 TMEM139Q8IV31 216 aa29.11■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms