RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 AKAP3O75969 853 aa25.15■■□□□ 1.62
CPSF4-204ENST00000436336 EPB41P11171 864 aaKnown RBP25.15■■□□□ 1.62
CPSF4-204ENST00000436336 EIF4BP23588 611 aaKnown RBP25.15■■□□□ 1.62
CPSF4-204ENST00000436336 PSMC2P35998 433 aaKnown RBP25.15■■□□□ 1.62
CPSF4-204ENST00000436336 UBASH3AP57075 661 aa25.15■■□□□ 1.62
CPSF4-204ENST00000436336 TSHZ1Q6ZSZ6 1077 aa25.15■■□□□ 1.62
CPSF4-204ENST00000436336 FRMD5Q7Z6J6 570 aa25.15■■□□□ 1.62
CPSF4-204ENST00000436336 CNTNAP2Q9UHC6 1331 aa25.14■■□□□ 1.62
CPSF4-204ENST00000436336 TTLL13PA6NNM8 815 aa25.14■■□□□ 1.61
CPSF4-204ENST00000436336 CBFA2T2O43439 604 aa25.14■■□□□ 1.61
CPSF4-204ENST00000436336 B4GALT4O60513 344 aa25.14■■□□□ 1.61
CPSF4-204ENST00000436336 CSDE1O75534 798 aaKnown RBP25.14■■□□□ 1.61
CPSF4-204ENST00000436336 TOM1L1O75674 476 aa25.14■■□□□ 1.61
CPSF4-204ENST00000436336 ADCY5O95622 1261 aa25.14■■□□□ 1.61
CPSF4-204ENST00000436336 MTIF2P46199 727 aaKnown RBP25.14■■□□□ 1.61
CPSF4-204ENST00000436336 CASP4P49662 377 aa25.14■■□□□ 1.61
CPSF4-204ENST00000436336 SNX17Q15036 470 aa25.14■■□□□ 1.61
CPSF4-204ENST00000436336 SENP6Q9GZR1 1112 aaPredicted RBP25.14■■□□□ 1.61
CPSF4-204ENST00000436336 METTL14Q9HCE5 456 aaKnown RBP25.14■■□□□ 1.61
CPSF4-204ENST00000436336 CDY2AQ9Y6F7 541 aa25.14■■□□□ 1.61
CPSF4-204ENST00000436336 ERLIN2O94905 339 aa25.13■■□□□ 1.61
CPSF4-204ENST00000436336 ZNF75DP51815 510 aa25.13■■□□□ 1.61
CPSF4-204ENST00000436336 COPB1P53618 953 aaKnown RBP25.13■■□□□ 1.61
CPSF4-204ENST00000436336 FILIP1LQ4L180 1135 aa25.13■■□□□ 1.61
CPSF4-204ENST00000436336 ATF7IP2Q5U623 682 aa25.13■■□□□ 1.61
CPSF4-204ENST00000436336 TUBGCP2Q9BSJ2 902 aa25.13■■□□□ 1.61
CPSF4-204ENST00000436336 XPO4Q9C0E2 1151 aaKnown RBP25.13■■□□□ 1.61
CPSF4-204ENST00000436336 MCOLN1Q9GZU1 580 aa25.13■■□□□ 1.61
CPSF4-204ENST00000436336 TNFSF13BQ9Y275 285 aa25.13■■□□□ 1.61
CPSF4-204ENST00000436336 A0A1B0GTH6 734 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 MAPK13O15264 365 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 B4GALT5O43286 388 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 CAND2O75155 1236 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 TPM2P07951 284 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 SFPQP23246 707 aaKnown RBP eCLIP25.12■■□□□ 1.61
CPSF4-204ENST00000436336 THPOP40225 353 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 MGAT3Q09327 533 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 TMEM132AQ24JP5 1023 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 FAM186BQ8IYM0 893 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 DHX38Q92620 1227 aaKnown RBP25.12■■□□□ 1.61
CPSF4-204ENST00000436336 ZBTB45Q96K62 511 aaPredicted RBP25.12■■□□□ 1.61
CPSF4-204ENST00000436336 TMEM106CQ9BVX2 250 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 TRPV6Q9H1D0 765 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 TAB2Q9NYJ8 693 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 ANKFY1Q9P2R3 1169 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 CLDN3O15551 220 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 TSPAN1O60635 241 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 TPM3P06753 285 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 PROZP22891 400 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 MATR3P43243 847 aaKnown RBP eCLIP25.12■■□□□ 1.61
CPSF4-204ENST00000436336 HSP90AA2PQ14568 343 aaPredicted RBP25.12■■□□□ 1.61
CPSF4-204ENST00000436336 MAN2A1Q16706 1144 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 TRIM71Q2Q1W2 868 aaKnown RBP25.12■■□□□ 1.61
CPSF4-204ENST00000436336 GPD1LQ8N335 351 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 TMEM40Q8WWA1 233 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 MRFAP1L1Q96HT8 127 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 NAP1L5Q96NT1 182 aaPredicted RBP25.12■■□□□ 1.61
CPSF4-204ENST00000436336 PTPRHQ9HD43 1115 aa25.12■■□□□ 1.61
CPSF4-204ENST00000436336 ARMCX3Q9UH62 379 aaPredicted RBP25.12■■□□□ 1.61
CPSF4-204ENST00000436336 MROH7Q68CQ1 1323 aa25.11■■□□□ 1.61
CPSF4-204ENST00000436336 A0A0B4J269 797 aa25.11■■□□□ 1.61
CPSF4-204ENST00000436336 LDHAP00338 332 aaKnown RBP25.11■■□□□ 1.61
CPSF4-204ENST00000436336 PRKCSHP14314 528 aaPredicted RBP25.11■■□□□ 1.61
CPSF4-204ENST00000436336 NCBP1Q09161 790 aaKnown RBP25.11■■□□□ 1.61
CPSF4-204ENST00000436336 MPZL3Q6UWV2 235 aa25.11■■□□□ 1.61
CPSF4-204ENST00000436336 CATSPER4Q7RTX7 472 aa25.11■■□□□ 1.61
CPSF4-204ENST00000436336 TRIM59Q8IWR1 403 aa25.11■■□□□ 1.61
CPSF4-204ENST00000436336 FAM126BQ8IXS8 530 aa25.11■■□□□ 1.61
CPSF4-204ENST00000436336 FBXL18Q96ME1 805 aa25.11■■□□□ 1.61
CPSF4-204ENST00000436336 TCHPQ9BT92 498 aa25.11■■□□□ 1.61
CPSF4-204ENST00000436336 HAPLN2Q9GZV7 340 aa25.11■■□□□ 1.61
CPSF4-204ENST00000436336 VPS16Q9H269 839 aa25.11■■□□□ 1.61
CPSF4-204ENST00000436336 KIAA1586Q9HCI6 787 aa25.11■■□□□ 1.61
CPSF4-204ENST00000436336 AGO2Q9UKV8 859 aaKnown RBP25.11■■□□□ 1.61
CPSF4-204ENST00000436336 ABLIM1O14639 778 aa25.1■■□□□ 1.61
CPSF4-204ENST00000436336 CHRNA1P02708 482 aa25.1■■□□□ 1.61
CPSF4-204ENST00000436336 COL6A1P12109 1028 aa25.1■■□□□ 1.61
CPSF4-204ENST00000436336 ARF4P18085 180 aaPredicted RBP25.1■■□□□ 1.61
CPSF4-204ENST00000436336 MCL1Q07820 350 aa25.1■■□□□ 1.61
CPSF4-204ENST00000436336 SLC39A5Q6ZMH5 540 aa25.1■■□□□ 1.61
CPSF4-204ENST00000436336 SAAL1Q96ER3 474 aa25.1■■□□□ 1.61
CPSF4-204ENST00000436336 BORCS6Q96GS4 357 aa25.1■■□□□ 1.61
CPSF4-204ENST00000436336 MSTO1Q9BUK6 570 aa25.1■■□□□ 1.61
CPSF4-204ENST00000436336 NOC4LQ9BVI4 516 aaKnown RBP25.1■■□□□ 1.61
CPSF4-204ENST00000436336 N4BP3O15049 544 aa25.09■■□□□ 1.61
CPSF4-204ENST00000436336 EXTL3O43909 919 aa25.09■■□□□ 1.61
CPSF4-204ENST00000436336 CTSHP09668 335 aa25.09■■□□□ 1.61
CPSF4-204ENST00000436336 FGFR4P22455 802 aa25.09■■□□□ 1.61
CPSF4-204ENST00000436336 NR1I3Q14994 352 aa25.09■■□□□ 1.61
CPSF4-204ENST00000436336 FAM26DQ5JW98 314 aa25.09■■□□□ 1.61
CPSF4-204ENST00000436336 RDH13Q8NBN7 331 aa25.09■■□□□ 1.61
CPSF4-204ENST00000436336 RTN4Q9NQC3 1192 aaKnown RBP25.09■■□□□ 1.61
CPSF4-204ENST00000436336 DNAH12Q6ZR08 3092 aa25.09■■□□□ 1.61
CPSF4-204ENST00000436336 CD4P01730 458 aa25.09■■□□□ 1.61
CPSF4-204ENST00000436336 AXLP30530 894 aa25.09■■□□□ 1.61
CPSF4-204ENST00000436336 PPP2R3AQ06190 1150 aa25.09■■□□□ 1.61
CPSF4-204ENST00000436336 NOLC1Q14978 699 aaKnown RBP eCLIP25.09■■□□□ 1.61
CPSF4-204ENST00000436336 SNRNP35Q16560 246 aaKnown RBP25.09■■□□□ 1.61
CPSF4-204ENST00000436336 ZNF568Q3ZCX4 644 aa25.09■■□□□ 1.61
CPSF4-204ENST00000436336 INTS8Q75QN2 995 aaKnown RBP25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms