RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 CST5P28325 142 aaPredicted RBP29.25■■■□□ 2.27
MSX1-201ENST00000382723 CASP14P31944 242 aa29.25■■■□□ 2.27
MSX1-201ENST00000382723 KIZQ2M2Z5 673 aa29.25■■■□□ 2.27
MSX1-201ENST00000382723 SLFN12LQ6IEE8 588 aa29.25■■■□□ 2.27
MSX1-201ENST00000382723 CCSAPQ6IQ19 270 aaPredicted RBP29.25■■■□□ 2.27
MSX1-201ENST00000382723 RNF180Q86T96 592 aa29.25■■■□□ 2.27
MSX1-201ENST00000382723 FAM213AQ9BRX8 229 aa29.25■■■□□ 2.27
MSX1-201ENST00000382723 FZD8Q9H461 694 aa29.25■■■□□ 2.27
MSX1-201ENST00000382723 GINS2Q9Y248 185 aa29.25■■■□□ 2.27
MSX1-201ENST00000382723 STYXL1Q9Y6J8 313 aa29.25■■■□□ 2.27
MSX1-201ENST00000382723 SIP14410 1827 aa29.24■■■□□ 2.27
MSX1-201ENST00000382723 B4GALT5O43286 388 aa29.24■■■□□ 2.27
MSX1-201ENST00000382723 TMEM132AQ24JP5 1023 aa29.24■■■□□ 2.27
MSX1-201ENST00000382723 FAM47CQ5HY64 1035 aa29.24■■■□□ 2.27
MSX1-201ENST00000382723 ZPBP2Q6X784 338 aa29.24■■■□□ 2.27
MSX1-201ENST00000382723 INTS8Q75QN2 995 aaKnown RBP29.24■■■□□ 2.27
MSX1-201ENST00000382723 GPD1LQ8N335 351 aa29.24■■■□□ 2.27
MSX1-201ENST00000382723 PCSK9Q8NBP7 692 aaKnown RBP29.24■■■□□ 2.27
MSX1-201ENST00000382723 DNAJB3Q8WWF6 145 aa29.24■■■□□ 2.27
MSX1-201ENST00000382723 ACO2Q99798 780 aaKnown RBP29.24■■■□□ 2.27
MSX1-201ENST00000382723 CRACR2AQ9BSW2 395 aa29.24■■■□□ 2.27
MSX1-201ENST00000382723 MMRN2Q9H8L6 949 aa29.24■■■□□ 2.27
MSX1-201ENST00000382723 AGO2Q9UKV8 859 aaKnown RBP29.24■■■□□ 2.27
MSX1-201ENST00000382723 SIK3Q9Y2K2 1263 aa29.24■■■□□ 2.27
MSX1-201ENST00000382723 ACKR2O00590 384 aa29.24■■■□□ 2.27
MSX1-201ENST00000382723 HARSP12081 509 aaKnown RBP29.24■■■□□ 2.27
MSX1-201ENST00000382723 PRPF4BQ13523 1007 aaKnown RBP29.24■■■□□ 2.27
MSX1-201ENST00000382723 AKR1B15C9JRZ8 316 aaPredicted RBP29.23■■■□□ 2.27
MSX1-201ENST00000382723 TPM1P09493 284 aa29.23■■■□□ 2.27
MSX1-201ENST00000382723 HOXC8P31273 242 aa29.23■■■□□ 2.27
MSX1-201ENST00000382723 FXR1P51114 621 aaKnown RBP eCLIP29.23■■■□□ 2.27
MSX1-201ENST00000382723 VAMP7P51809 220 aa29.23■■■□□ 2.27
MSX1-201ENST00000382723 TCHPQ9BT92 498 aa29.23■■■□□ 2.27
MSX1-201ENST00000382723 MSTO1Q9BUK6 570 aa29.23■■■□□ 2.27
MSX1-201ENST00000382723 MAPK13O15264 365 aa29.22■■■□□ 2.27
MSX1-201ENST00000382723 TRIM21P19474 475 aaKnown RBP29.22■■■□□ 2.27
MSX1-201ENST00000382723 DLG4P78352 724 aa29.22■■■□□ 2.27
MSX1-201ENST00000382723 KCNMA1Q12791 1236 aa29.22■■■□□ 2.27
MSX1-201ENST00000382723 ZBTB33Q86T24 672 aa29.22■■■□□ 2.27
MSX1-201ENST00000382723 ZNF410Q86VK4 478 aa29.22■■■□□ 2.27
MSX1-201ENST00000382723 IFNLR1Q8IU57 520 aaPredicted RBP29.22■■■□□ 2.27
MSX1-201ENST00000382723 TC2NQ8N9U0 490 aa29.22■■■□□ 2.27
MSX1-201ENST00000382723 FBXL18Q96ME1 805 aa29.22■■■□□ 2.27
MSX1-201ENST00000382723 FAM207AQ9NSI2 230 aaPredicted RBP29.22■■■□□ 2.27
MSX1-201ENST00000382723 PRMT7Q9NVM4 692 aaPredicted RBP29.22■■■□□ 2.27
MSX1-201ENST00000382723 GTF2IRD1Q9UHL9 959 aa29.22■■■□□ 2.27
MSX1-201ENST00000382723 PTPN22Q9Y2R2 807 aa29.22■■■□□ 2.27
MSX1-201ENST00000382723 KAT6AQ92794 2004 aa29.22■■■□□ 2.27
MSX1-201ENST00000382723 CLDN3O15551 220 aa29.22■■■□□ 2.27
MSX1-201ENST00000382723 TOM1L1O75674 476 aa29.22■■■□□ 2.27
MSX1-201ENST00000382723 TRIM14Q14142 442 aa29.22■■■□□ 2.27
MSX1-201ENST00000382723 LHX8Q68G74 356 aa29.22■■■□□ 2.27
MSX1-201ENST00000382723 VTI1AQ96AJ9 217 aa29.22■■■□□ 2.27
MSX1-201ENST00000382723 A0A0B4J269 797 aa29.21■■■□□ 2.27
MSX1-201ENST00000382723 RNF225M0QZC1 329 aaPredicted RBP29.21■■■□□ 2.27
MSX1-201ENST00000382723 EXTL3O43909 919 aa29.21■■■□□ 2.27
MSX1-201ENST00000382723 ACOT2P49753 483 aa29.21■■■□□ 2.27
MSX1-201ENST00000382723 PLEKHO2Q8TD55 490 aa29.21■■■□□ 2.27
MSX1-201ENST00000382723 ADAMTS10Q9H324 1103 aa29.21■■■□□ 2.27
MSX1-201ENST00000382723 EIF2AK3Q9NZJ5 1116 aaKnown RBP29.21■■■□□ 2.27
MSX1-201ENST00000382723 ZKSCAN5Q9Y2L8 839 aa29.21■■■□□ 2.27
MSX1-201ENST00000382723 CEP350Q5VT06 3117 aa29.2■■■□□ 2.27
MSX1-201ENST00000382723 MYCP01106 439 aaPredicted RBP29.2■■■□□ 2.27
MSX1-201ENST00000382723 ATF7IP2Q5U623 682 aa29.2■■■□□ 2.27
MSX1-201ENST00000382723 GDF6Q6KF10 455 aaPredicted RBP29.2■■■□□ 2.27
MSX1-201ENST00000382723 CDR2LQ86X02 465 aaPredicted RBP29.2■■■□□ 2.27
MSX1-201ENST00000382723 CCDC127Q96BQ5 260 aa29.2■■■□□ 2.27
MSX1-201ENST00000382723 CDHR5Q9HBB8 845 aa29.2■■■□□ 2.27
MSX1-201ENST00000382723 TTC26A0AVF1 554 aa29.2■■■□□ 2.26
MSX1-201ENST00000382723 MFAP3LO75121 409 aa29.2■■■□□ 2.26
MSX1-201ENST00000382723 GPR32O75388 356 aa29.2■■■□□ 2.26
MSX1-201ENST00000382723 TSHZ1Q6ZSZ6 1077 aa29.2■■■□□ 2.26
MSX1-201ENST00000382723 NUP58Q9BVL2 599 aa29.2■■■□□ 2.26
MSX1-201ENST00000382723 ZNF233A6NK53 670 aa29.19■■■□□ 2.26
MSX1-201ENST00000382723 KIAA0391O15091 583 aaKnown RBP29.19■■■□□ 2.26
MSX1-201ENST00000382723 ACLYP53396 1101 aa29.19■■■□□ 2.26
MSX1-201ENST00000382723 SEZ6Q53EL9 994 aa29.19■■■□□ 2.26
MSX1-201ENST00000382723 ZBTB41Q5SVQ8 909 aa29.19■■■□□ 2.26
MSX1-201ENST00000382723 LSM14BQ9BX40 385 aaKnown RBP29.19■■■□□ 2.26
MSX1-201ENST00000382723 KIAA1586Q9HCI6 787 aa29.19■■■□□ 2.26
MSX1-201ENST00000382723 FGFR4P22455 802 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 FMO5P49326 533 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 CDC42EP1Q00587 391 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 CYP24A1Q07973 514 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 AMHR2Q16671 573 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 FAM187BQ17R55 369 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 ZSCAN30Q86W11 494 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 CNGA4Q8IV77 575 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 MFSD14AQ96MC6 490 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 OSMRQ99650 979 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 GCOM2Q9BZD3 368 aaPredicted RBP29.18■■■□□ 2.26
MSX1-201ENST00000382723 XRN2Q9H0D6 950 aaKnown RBP eCLIP29.18■■■□□ 2.26
MSX1-201ENST00000382723 EPHB6O15197 1021 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 CCZ1BP86790 482 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 CCZ1P86791 482 aaPredicted RBP29.18■■■□□ 2.26
MSX1-201ENST00000382723 CBWD6Q4V339 395 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 CBWD3Q5JTY5 395 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 CBWD5Q5RIA9 395 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 SRGAP1Q7Z6B7 1085 aa29.18■■■□□ 2.26
MSX1-201ENST00000382723 DNAJC5GQ8N7S2 189 aa29.18■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 165 ms