RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 POMGNT1Q8WZA1 660 aa29.32■■■□□ 2.28
MSX1-201ENST00000382723 MKNK1Q9BUB5 465 aa29.32■■■□□ 2.28
MSX1-201ENST00000382723 C2orf40Q9H1Z8 148 aa29.32■■■□□ 2.28
MSX1-201ENST00000382723 GOLGA8IPA6NC78 632 aa29.32■■■□□ 2.28
MSX1-201ENST00000382723 GOLGA8JA6NMD2 632 aa29.32■■■□□ 2.28
MSX1-201ENST00000382723 EDN1P05305 212 aa29.32■■■□□ 2.28
MSX1-201ENST00000382723 TCERG1LQ5VWI1 586 aa29.32■■■□□ 2.28
MSX1-201ENST00000382723 SAAL1Q96ER3 474 aa29.32■■■□□ 2.28
MSX1-201ENST00000382723 TARS2Q9BW92 718 aaKnown RBP29.32■■■□□ 2.28
MSX1-201ENST00000382723 CCDC113Q9H0I3 377 aa29.32■■■□□ 2.28
MSX1-201ENST00000382723 FAM49AQ9H0Q0 323 aaPredicted RBP29.32■■■□□ 2.28
MSX1-201ENST00000382723 HDAC6Q9UBN7 1215 aa29.32■■■□□ 2.28
MSX1-201ENST00000382723 HTTP42858 3142 aa29.32■■■□□ 2.28
MSX1-201ENST00000382723 GSDMDP57764 484 aa29.31■■■□□ 2.28
MSX1-201ENST00000382723 C1QTNF8P60827 252 aa29.31■■■□□ 2.28
MSX1-201ENST00000382723 GOLGA8FQ08AF8 430 aa29.31■■■□□ 2.28
MSX1-201ENST00000382723 GOLGA8DPQ0D2H9 430 aa29.31■■■□□ 2.28
MSX1-201ENST00000382723 TBX2Q13207 712 aaPredicted RBP29.31■■■□□ 2.28
MSX1-201ENST00000382723 SYCP1Q15431 976 aa29.31■■■□□ 2.28
MSX1-201ENST00000382723 KIAA0319LQ8IZA0 1049 aa29.31■■■□□ 2.28
MSX1-201ENST00000382723 CCDC155Q8N6L0 562 aa29.31■■■□□ 2.28
MSX1-201ENST00000382723 TMEM174Q8WUU8 243 aa29.31■■■□□ 2.28
MSX1-201ENST00000382723 BORCS6Q96GS4 357 aa29.31■■■□□ 2.28
MSX1-201ENST00000382723 NKX3-2P78367 333 aa29.3■■■□□ 2.28
MSX1-201ENST00000382723 ZNF200P98182 395 aaPredicted RBP29.3■■■□□ 2.28
MSX1-201ENST00000382723 PCMTD1Q96MG8 357 aaPredicted RBP29.3■■■□□ 2.28
MSX1-201ENST00000382723 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP29.3■■■□□ 2.28
MSX1-201ENST00000382723 ITIH6Q6UXX5 1313 aa29.3■■■□□ 2.28
MSX1-201ENST00000382723 A0A087WZ62 844 aa29.3■■■□□ 2.28
MSX1-201ENST00000382723 A0A1W2PQC6 194 aa29.3■■■□□ 2.28
MSX1-201ENST00000382723 C17orf102A2RUQ5 167 aa29.3■■■□□ 2.28
MSX1-201ENST00000382723 INO80B-WBP1J3KQ70 363 aa29.3■■■□□ 2.28
MSX1-201ENST00000382723 PRKCBP05771 671 aa29.3■■■□□ 2.28
MSX1-201ENST00000382723 KLK7P49862 253 aa29.3■■■□□ 2.28
MSX1-201ENST00000382723 PTENP60484 403 aa29.3■■■□□ 2.28
MSX1-201ENST00000382723 KCNH2Q12809 1159 aa29.3■■■□□ 2.28
MSX1-201ENST00000382723 KCNA10Q16322 511 aa29.3■■■□□ 2.28
MSX1-201ENST00000382723 MAPK6Q16659 721 aa29.3■■■□□ 2.28
MSX1-201ENST00000382723 CACTINQ8WUQ7 758 aaKnown RBP29.3■■■□□ 2.28
MSX1-201ENST00000382723 CPLX3Q8WVH0 158 aa29.3■■■□□ 2.28
MSX1-201ENST00000382723 FDXACB1Q9BRP7 624 aaPredicted RBP29.3■■■□□ 2.28
MSX1-201ENST00000382723 INO80BQ9C086 356 aaPredicted RBP29.3■■■□□ 2.28
MSX1-201ENST00000382723 CYP2C9P11712 490 aa29.29■■■□□ 2.28
MSX1-201ENST00000382723 PHKA2P46019 1235 aa29.29■■■□□ 2.28
MSX1-201ENST00000382723 RUFY4Q6ZNE9 571 aa29.29■■■□□ 2.28
MSX1-201ENST00000382723 PPFIBP1Q86W92 1011 aa29.29■■■□□ 2.28
MSX1-201ENST00000382723 NLRP7Q8WX94 980 aa29.29■■■□□ 2.28
MSX1-201ENST00000382723 SCLT1Q96NL6 688 aa29.29■■■□□ 2.28
MSX1-201ENST00000382723 KCNF1Q9H3M0 494 aa29.29■■■□□ 2.28
MSX1-201ENST00000382723 IFT122Q9HBG6 1241 aa29.29■■■□□ 2.28
MSX1-201ENST00000382723 MBLAC1A4D2B0 266 aaPredicted RBP29.28■■■□□ 2.28
MSX1-201ENST00000382723 TTLL13PA6NNM8 815 aa29.28■■■□□ 2.28
MSX1-201ENST00000382723 TULP1O00294 542 aaPredicted RBP29.28■■■□□ 2.28
MSX1-201ENST00000382723 TREHO43280 583 aa29.28■■■□□ 2.28
MSX1-201ENST00000382723 MSCO60682 206 aa29.28■■■□□ 2.28
MSX1-201ENST00000382723 PIGRP01833 764 aa29.28■■■□□ 2.28
MSX1-201ENST00000382723 ASGR1P07306 291 aa29.28■■■□□ 2.28
MSX1-201ENST00000382723 LRMPQ12912 555 aa29.28■■■□□ 2.28
MSX1-201ENST00000382723 KLHDC9Q8NEP7 349 aa29.28■■■□□ 2.28
MSX1-201ENST00000382723 ZBTB45Q96K62 511 aaPredicted RBP29.28■■■□□ 2.28
MSX1-201ENST00000382723 MINDY3Q9H8M7 445 aa29.28■■■□□ 2.28
MSX1-201ENST00000382723 WBP1LQ9NX94 342 aa29.28■■■□□ 2.28
MSX1-201ENST00000382723 ANKFY1Q9P2R3 1169 aa29.28■■■□□ 2.28
MSX1-201ENST00000382723 CSDE1O75534 798 aaKnown RBP29.28■■■□□ 2.28
MSX1-201ENST00000382723 GARTP22102 1010 aa29.28■■■□□ 2.28
MSX1-201ENST00000382723 MATR3P43243 847 aaKnown RBP eCLIP29.28■■■□□ 2.28
MSX1-201ENST00000382723 RBL2Q08999 1139 aa29.28■■■□□ 2.28
MSX1-201ENST00000382723 TMEM62Q0P6H9 643 aa29.28■■■□□ 2.28
MSX1-201ENST00000382723 NBPF20Q3BBV1 942 aa29.28■■■□□ 2.28
MSX1-201ENST00000382723 LRRC8AQ8IWT6 810 aa29.28■■■□□ 2.28
MSX1-201ENST00000382723 ERGIC2Q96RQ1 377 aa29.28■■■□□ 2.28
MSX1-201ENST00000382723 HMX1Q9NP08 348 aaPredicted RBP29.28■■■□□ 2.28
MSX1-201ENST00000382723 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP29.28■■■□□ 2.28
MSX1-201ENST00000382723 AFPP02771 609 aaKnown RBP29.27■■■□□ 2.28
MSX1-201ENST00000382723 NLRP11P59045 1033 aaKnown RBP29.27■■■□□ 2.28
MSX1-201ENST00000382723 ADAM17P78536 824 aa29.27■■■□□ 2.28
MSX1-201ENST00000382723 MBTD1Q05BQ5 628 aa29.27■■■□□ 2.28
MSX1-201ENST00000382723 CBWD2Q8IUF1 395 aa29.27■■■□□ 2.28
MSX1-201ENST00000382723 SH3TC2Q8TF17 1288 aa29.27■■■□□ 2.28
MSX1-201ENST00000382723 SLC35C1Q96A29 364 aa29.27■■■□□ 2.28
MSX1-201ENST00000382723 MRPL4Q9BYD3 311 aaKnown RBP29.27■■■□□ 2.28
MSX1-201ENST00000382723 KRT13P13646 458 aa29.26■■■□□ 2.27
MSX1-201ENST00000382723 SFPQP23246 707 aaKnown RBP eCLIP29.26■■■□□ 2.27
MSX1-201ENST00000382723 GPC3P51654 580 aa29.26■■■□□ 2.27
MSX1-201ENST00000382723 ADKP55263 362 aaKnown RBP29.26■■■□□ 2.27
MSX1-201ENST00000382723 PPP2R3AQ06190 1150 aa29.26■■■□□ 2.27
MSX1-201ENST00000382723 CCDC150Q8NCX0 1101 aa29.26■■■□□ 2.27
MSX1-201ENST00000382723 EVPLQ92817 2033 aa29.26■■■□□ 2.27
MSX1-201ENST00000382723 SMIM35A0A1B0GVV1 85 aa29.26■■■□□ 2.27
MSX1-201ENST00000382723 GYPCP04921 128 aa29.26■■■□□ 2.27
MSX1-201ENST00000382723 GNAT1P11488 350 aa29.26■■■□□ 2.27
MSX1-201ENST00000382723 POU5F1BQ06416 359 aa29.26■■■□□ 2.27
MSX1-201ENST00000382723 BFSP1Q12934 665 aa29.26■■■□□ 2.27
MSX1-201ENST00000382723 SNRNP35Q16560 246 aaKnown RBP29.26■■■□□ 2.27
MSX1-201ENST00000382723 NFKBIZQ9BYH8 718 aa29.26■■■□□ 2.27
MSX1-201ENST00000382723 HAPLN2Q9GZV7 340 aa29.26■■■□□ 2.27
MSX1-201ENST00000382723 ADRB2P07550 413 aa29.25■■■□□ 2.27
MSX1-201ENST00000382723 IQCF3P0C7M6 154 aa29.25■■■□□ 2.27
MSX1-201ENST00000382723 TRIM49P0CI25 452 aa29.25■■■□□ 2.27
MSX1-201ENST00000382723 TRIM49CP0CI26 452 aa29.25■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms