RNA–Protein interactions for RNA: YPL003W

ULA1, Transcript of Protein that activates Rub1p (NEDD8) before neddylation, yeast

Gene ULA1, Length 1,389 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ULA1	YPL003W	RPN13	O13563	156 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	CDC31	P06704	161 aa	Known RBP	4.81	□□□□□ -1.64
ULA1	YPL003W	ARF1	P11076	181 aa	Known RBP	4.81	□□□□□ -1.64
ULA1	YPL003W	HEM13	P11353	328 aa	Known RBP	4.81	□□□□□ -1.64
ULA1	YPL003W	DAL82	P21705	255 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	HSP30	P25619	332 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	YEF1	P32622	495 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	NPL6	P32832	435 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	SLC1	P33333	303 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	NIC96	P34077	839 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	MTC2	P34246	357 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
ULA1	YPL003W	UME6	P39001	836 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	FMC1	P40491	155 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	YAE1	P47118	141 aa	Predicted RBP	4.81	□□□□□ -1.64
ULA1	YPL003W	HSV2	P50079	448 aa	Predicted RBP	4.81	□□□□□ -1.64
ULA1	YPL003W	LCL3	P53153	274 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	CPR8	P53728	308 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	YNR062C	P53748	327 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	PGA1	P53896	198 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	DML1	Q03652	475 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	YDR514C	Q04408	483 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	UTP21	Q06078	939 aa	Predicted RBP	4.81	□□□□□ -1.64
ULA1	YPL003W	YLR173W	Q06247	608 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	HNT3	Q08702	217 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	MCP1	Q12106	302 aa		4.81	□□□□□ -1.64
ULA1	YPL003W	COX1	P00401	534 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	NCP1	P16603	691 aa	Known RBP	4.8	□□□□□ -1.64
ULA1	YPL003W	FPS1	P23900	669 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	ARO7	P32178	256 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	ECT1	P33412	323 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	YKL107W	P34251	309 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	YKL071W	P36086	256 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	GPX2	P38143	162 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	VBA2	P38358	474 aa	Known RBP	4.8	□□□□□ -1.64
ULA1	YPL003W	YJL193W	P39542	402 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	RTT105	P40063	208 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	HIS6	P40545	261 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	HXT9	P40885	567 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	CIN1	P40987	1014 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	GDS1	P41913	522 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	PFS2	P42841	465 aa	Known RBP	4.8	□□□□□ -1.64
ULA1	YPL003W	IRC6	P43615	237 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	VPS73	P53142	486 aa	Known RBP	4.8	□□□□□ -1.64
ULA1	YPL003W	OGG1	P53397	376 aa	Predicted RBP	4.8	□□□□□ -1.64
ULA1	YPL003W	MPA43	P53583	542 aa	Predicted RBP	4.8	□□□□□ -1.64
ULA1	YPL003W	RHO5	P53879	331 aa	Known RBP	4.8	□□□□□ -1.64
ULA1	YPL003W	HXT11	P54862	567 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	FDC1	Q03034	503 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	PAL1	Q05518	499 aa	Known RBP	4.8	□□□□□ -1.64
ULA1	YPL003W	GPN3	Q06543	272 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	IPK1	Q06667	281 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	AVO1	Q08236	1176 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	ACF2	Q12168	779 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	YOL114C	Q12322	202 aa		4.8	□□□□□ -1.64
ULA1	YPL003W	ADE5,7	P07244	802 aa	Known RBP	4.79	□□□□□ -1.64
ULA1	YPL003W	NFT1	P0CE68	1218 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	YPK2	P18961	677 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	NUP1	P20676	1076 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	AHC2	P25649	128 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	PRE2	P30656	287 aa	Known RBP	4.79	□□□□□ -1.64
ULA1	YPL003W	TRS65	P32893	560 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	MSN4	P33749	630 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	RSM22	P36056	628 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	UBS1	P38290	277 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	FET3	P38993	636 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	FCY21	P40039	528 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	CUP9	P41817	306 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	SNO3	P43544	222 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	SFH5	P47008	294 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	YJL055W	P47044	245 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	PMT3	P47190	753 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	ECL1	P48235	211 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	IMD3	P50095	523 aa	Known RBP	4.79	□□□□□ -1.64
ULA1	YPL003W	RRN9	P53437	365 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	EKI1	Q03764	534 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	DCR2	Q05924	578 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	COQ10	Q08058	207 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	NGL1	Q08213	363 aa	Known RBP	4.79	□□□□□ -1.64
ULA1	YPL003W	ENB1	Q08299	606 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	FRE5	Q08908	694 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	RKM1	Q08961	583 aa	Predicted RBP	4.79	□□□□□ -1.64
ULA1	YPL003W	PRP46	Q12417	451 aa	Predicted RBP	4.79	□□□□□ -1.64
ULA1	YPL003W	SET6	Q12529	373 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	TAD3	Q9URQ3	322 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	CSF1	Q12150	2958 aa		4.79	□□□□□ -1.64
ULA1	YPL003W	YEL009C-A	A0A023PZF2	135 aa		4.78	□□□□□ -1.64
ULA1	YPL003W	YPT1	P01123	206 aa	Known RBP	4.78	□□□□□ -1.64
ULA1	YPL003W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.78	□□□□□ -1.64	RIP-Chip
ULA1	YPL003W	SDS22	P36047	338 aa		4.78	□□□□□ -1.64
ULA1	YPL003W	YKR073C	P36153	106 aa		4.78	□□□□□ -1.64
ULA1	YPL003W	MTC4	P38335	694 aa	Known RBP	4.78	□□□□□ -1.64
ULA1	YPL003W	RPP1	P38786	293 aa		4.78	□□□□□ -1.64
ULA1	YPL003W	YHR180W	P38868	163 aa		4.78	□□□□□ -1.64
ULA1	YPL003W	MLH1	P38920	769 aa		4.78	□□□□□ -1.64
ULA1	YPL003W	PHO90	P39535	881 aa		4.78	□□□□□ -1.64
ULA1	YPL003W	YER184C	P39961	794 aa		4.78	□□□□□ -1.64
ULA1	YPL003W	SDP1	P40479	209 aa		4.78	□□□□□ -1.64
ULA1	YPL003W	YJL218W	P40892	196 aa	Known RBP	4.78	□□□□□ -1.64
ULA1	YPL003W	BAP3	P41815	604 aa		4.78	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 70.2 ms