RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 CTAGE9A4FU28 777 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 N4BP1O75113 896 aaKnown RBP18.37■□□□□ 0.53
LDLR-206ENST00000557958 TRPA1O75762 1119 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 FARP2O94887 1054 aaPredicted RBP18.37■□□□□ 0.53
LDLR-206ENST00000557958 STBD1O95210 358 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 VEGFBP49765 207 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 KIF11P52732 1056 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 POLGP54098 1239 aaPredicted RBP18.37■□□□□ 0.53
LDLR-206ENST00000557958 CETN1Q12798 172 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 BFSP1Q12934 665 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 MAPK8IP2Q13387 824 aaPredicted RBP18.37■□□□□ 0.53
LDLR-206ENST00000557958 ZNF569Q5MCW4 686 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 CCDC122Q5T0U0 273 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 METTL7BQ6UX53 244 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 MAP4K3Q8IVH8 894 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 XXYLT1Q8NBI6 393 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 JAKMIP2Q96AA8 810 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 GANQ9H2C0 597 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 ARHGAP20Q9P2F6 1191 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 REXO2Q9Y3B8 237 aaKnown RBP18.37■□□□□ 0.53
LDLR-206ENST00000557958 PPME1Q9Y570 386 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 ZNFX1Q9P2E3 1918 aaKnown RBP18.37■□□□□ 0.53
LDLR-206ENST00000557958 ARIH2O95376 493 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 GGPS1O95749 300 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 TXNP10599 105 aaKnown RBP18.37■□□□□ 0.53
LDLR-206ENST00000557958 PON1P27169 355 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 ARHGAP25P42331 645 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 VAV2P52735 878 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 KIF5AQ12840 1032 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 KLHDC7AQ5VTJ3 777 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 TMEM161BQ8NDZ6 487 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 FAM167AQ96KS9 214 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 IFIH1Q9BYX4 1025 aaKnown RBP18.37■□□□□ 0.53
LDLR-206ENST00000557958 NRBP2Q9NSY0 501 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.37■□□□□ 0.53
LDLR-206ENST00000557958 AIPL1Q9NZN9 384 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 TBX20Q9UMR3 447 aa18.37■□□□□ 0.53
LDLR-206ENST00000557958 BZW2Q9Y6E2 419 aaKnown RBP18.37■□□□□ 0.53
LDLR-206ENST00000557958 PLXNB2O15031 1838 aa18.36■□□□□ 0.53
LDLR-206ENST00000557958 IGKV6D-21A0A0A0MT36 114 aa18.36■□□□□ 0.53
LDLR-206ENST00000557958 UCHL3P15374 230 aa18.36■□□□□ 0.53
LDLR-206ENST00000557958 EIF4A3P38919 411 aaKnown RBP18.36■□□□□ 0.53
LDLR-206ENST00000557958 FMO5P49326 533 aa18.36■□□□□ 0.53
LDLR-206ENST00000557958 MAP2K5Q13163 448 aa18.36■□□□□ 0.53
LDLR-206ENST00000557958 RAPGEF1Q13905 1077 aa18.36■□□□□ 0.53
LDLR-206ENST00000557958 ASIC2Q16515 512 aa18.36■□□□□ 0.53
LDLR-206ENST00000557958 MNS1Q8NEH6 495 aa18.36■□□□□ 0.53
LDLR-206ENST00000557958 SLC7A3Q8WY07 619 aa18.36■□□□□ 0.53
LDLR-206ENST00000557958 SEPT1Q8WYJ6 367 aa18.36■□□□□ 0.53
LDLR-206ENST00000557958 COPS5Q92905 334 aa18.36■□□□□ 0.53
LDLR-206ENST00000557958 ARHGAP39Q9C0H5 1083 aa18.36■□□□□ 0.53
LDLR-206ENST00000557958 AZI2Q9H6S1 392 aa18.36■□□□□ 0.53
LDLR-206ENST00000557958 PDLIM7Q9NR12 457 aa18.36■□□□□ 0.53
LDLR-206ENST00000557958 GUCA1BQ9UMX6 200 aa18.36■□□□□ 0.53
LDLR-206ENST00000557958 DENND3A2RUS2 1198 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 LCA5LO95447 670 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 RFC5P40937 340 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 PSMC4P43686 418 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 EMC2Q15006 297 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 MTERF2Q49AM1 385 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 MORN1Q5T089 497 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 TMEM63BQ5T3F8 832 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 USP37Q86T82 979 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 ZNF710Q8N1W2 664 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 CCDC94Q9BW85 323 aaPredicted RBP18.35■□□□□ 0.53
LDLR-206ENST00000557958 HSPBP1Q9NZL4 362 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 DDX41Q9UJV9 622 aaKnown RBP18.35■□□□□ 0.53
LDLR-206ENST00000557958 ZHX1Q9UKY1 873 aaPredicted RBP18.35■□□□□ 0.53
LDLR-206ENST00000557958 ZNF215Q9UL58 517 aaPredicted RBP18.35■□□□□ 0.53
LDLR-206ENST00000557958 RFX1P22670 979 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 MYL7Q01449 175 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 TTLL4Q14679 1199 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 DHX37Q8IY37 1157 aaKnown RBP18.35■□□□□ 0.53
LDLR-206ENST00000557958 MORC4Q8TE76 937 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 AFAP1L1Q8TED9 768 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 NAPGQ99747 312 aaPredicted RBP18.35■□□□□ 0.53
LDLR-206ENST00000557958 TINF2Q9BSI4 451 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 NIFKQ9BYG3 293 aaKnown RBP18.35■□□□□ 0.53
LDLR-206ENST00000557958 POLR3FQ9H1D9 316 aaPredicted RBP18.35■□□□□ 0.53
LDLR-206ENST00000557958 IKZF4Q9H2S9 585 aa18.35■□□□□ 0.53
LDLR-206ENST00000557958 P4HA2O15460 535 aa18.34■□□□□ 0.53
LDLR-206ENST00000557958 SNAI1O95863 264 aaPredicted RBP18.34■□□□□ 0.53
LDLR-206ENST00000557958 SLC9A1P19634 815 aa18.34■□□□□ 0.53
LDLR-206ENST00000557958 ANXA13P27216 316 aa18.34■□□□□ 0.53
LDLR-206ENST00000557958 CTGFP29279 349 aa18.34■□□□□ 0.53
LDLR-206ENST00000557958 STAT5BP51692 787 aa18.34■□□□□ 0.53
LDLR-206ENST00000557958 KLHL30Q0D2K2 578 aa18.34■□□□□ 0.53
LDLR-206ENST00000557958 PRAMEF19Q5SWL8 479 aa18.34■□□□□ 0.53
LDLR-206ENST00000557958 EXOC8Q8IYI6 725 aa18.34■□□□□ 0.53
LDLR-206ENST00000557958 REM2Q8IYK8 340 aaPredicted RBP18.34■□□□□ 0.53
LDLR-206ENST00000557958 IRX2Q9BZI1 471 aaPredicted RBP18.34■□□□□ 0.53
LDLR-206ENST00000557958 DIS3Q9Y2L1 958 aaKnown RBP18.34■□□□□ 0.53
LDLR-206ENST00000557958 ARID2Q68CP9 1835 aa18.34■□□□□ 0.53
LDLR-206ENST00000557958 NOP56O00567 594 aaKnown RBP18.33■□□□□ 0.53
LDLR-206ENST00000557958 PLEKP08567 350 aaPredicted RBP18.33■□□□□ 0.53
LDLR-206ENST00000557958 VAMP7P51809 220 aa18.33■□□□□ 0.53
LDLR-206ENST00000557958 FCGRTP55899 365 aa18.33■□□□□ 0.53
LDLR-206ENST00000557958 CCL14Q16627 93 aa18.33■□□□□ 0.53
LDLR-206ENST00000557958 BRDTQ58F21 947 aaPredicted RBP18.33■□□□□ 0.53
LDLR-206ENST00000557958 GJC2Q5T442 439 aaPredicted RBP18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms