RNA–Protein interactions for RNA: YDR427W

RPN9, Transcript of Non-ATPase regulatory subunit of the 26S proteasome, yeast

Gene RPN9, Length 1,182 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN9	YDR427W	RAD23	P32628	398 aa	Known RBP	2.72	□□□□□ -1.97
RPN9	YDR427W	EFM1	P38732	585 aa		2.72	□□□□□ -1.97
RPN9	YDR427W	YNL320W	P42840	284 aa		2.72	□□□□□ -1.97
RPN9	YDR427W	SHE4	P51534	789 aa		2.72	□□□□□ -1.97
RPN9	YDR427W	HST4	P53688	370 aa		2.72	□□□□□ -1.97
RPN9	YDR427W	ARR1	Q06596	294 aa		2.72	□□□□□ -1.97
RPN9	YDR427W	VMA2	P16140	517 aa	Known RBP	2.71	□□□□□ -1.98
RPN9	YDR427W	ZIP1	P31111	875 aa		2.71	□□□□□ -1.98
RPN9	YDR427W	PRY2	P36110	329 aa		2.71	□□□□□ -1.98
RPN9	YDR427W	PCH2	P38126	564 aa		2.71	□□□□□ -1.98
RPN9	YDR427W	ALP1	P38971	573 aa		2.71	□□□□□ -1.98
RPN9	YDR427W	FRT2	P39734	528 aa		2.71	□□□□□ -1.98
RPN9	YDR427W	YFR018C	P43599	363 aa		2.71	□□□□□ -1.98
RPN9	YDR427W	NAS6	P50086	228 aa		2.71	□□□□□ -1.98
RPN9	YDR427W	SPH1	Q06160	661 aa		2.71	□□□□□ -1.98
RPN9	YDR427W	MMT2	Q08970	484 aa		2.71	□□□□□ -1.98
RPN9	YDR427W	PRM7	Q12459	698 aa		2.71	□□□□□ -1.98
RPN9	YDR427W	KRR1	P25586	316 aa	Predicted RBP	2.7	□□□□□ -1.98
RPN9	YDR427W	CIN8	P27895	1000 aa		2.7	□□□□□ -1.98
RPN9	YDR427W	IML3	P38265	245 aa		2.7	□□□□□ -1.98
RPN9	YDR427W	TRR2	P38816	342 aa		2.7	□□□□□ -1.98
RPN9	YDR427W	LIN1	P38852	340 aa	Predicted RBP	2.7	□□□□□ -1.98
RPN9	YDR427W	UFE1	P41834	346 aa		2.7	□□□□□ -1.98
RPN9	YDR427W	APC4	Q04601	652 aa		2.7	□□□□□ -1.98
RPN9	YDR427W	YOL029C	Q08187	201 aa		2.7	□□□□□ -1.98
RPN9	YDR427W	COX10	P21592	462 aa		2.69	□□□□□ -1.98
RPN9	YDR427W	YKL071W	P36086	256 aa		2.69	□□□□□ -1.98
RPN9	YDR427W	TAE1	P38340	232 aa		2.69	□□□□□ -1.98
RPN9	YDR427W	PRP39	P39682	629 aa	Known RBP	2.69	□□□□□ -1.98
RPN9	YDR427W	BTT1	P40314	149 aa	Predicted RBP	2.69	□□□□□ -1.98
RPN9	YDR427W	TPC1	P53257	314 aa		2.69	□□□□□ -1.98
RPN9	YDR427W	SPO24	Q3E752	67 aa		2.69	□□□□□ -1.98
RPN9	YDR427W	RGS2	Q99188	309 aa		2.69	□□□□□ -1.98
RPN9	YDR427W	YLL053C	P0CD98	152 aa		2.68	□□□□□ -1.98
RPN9	YDR427W	TRX1	P22217	103 aa	Known RBP	2.68	□□□□□ -1.98
RPN9	YDR427W	MYO3	P36006	1272 aa		2.68	□□□□□ -1.98
RPN9	YDR427W	RRG9	P40156	214 aa		2.68	□□□□□ -1.98
RPN9	YDR427W	YGL114W	P53134	725 aa		2.68	□□□□□ -1.98
RPN9	YDR427W	ZRG17	P53735	605 aa		2.68	□□□□□ -1.98
RPN9	YDR427W	MRX8	Q05473	314 aa		2.68	□□□□□ -1.98
RPN9	YDR427W	YDR262W	Q12331	272 aa		2.68	□□□□□ -1.98
RPN9	YDR427W	VPS63	O13549	108 aa		2.67	□□□□□ -1.98
RPN9	YDR427W	REP1	P03871	373 aa		2.67	□□□□□ -1.98
RPN9	YDR427W	CKA2	P19454	339 aa		2.67	□□□□□ -1.98
RPN9	YDR427W	AGA2	P32781	87 aa		2.67	□□□□□ -1.98
RPN9	YDR427W	YNL146W	P53906	100 aa		2.67	□□□□□ -1.98
RPN9	YDR427W	PRO2	P54885	456 aa	Known RBP	2.67	□□□□□ -1.98
RPN9	YDR427W	INP2	Q03824	705 aa		2.67	□□□□□ -1.98
RPN9	YDR427W	RNR2	P09938	399 aa	Known RBP	2.66	□□□□□ -1.98
RPN9	YDR427W	SKG6	P32900	734 aa	Predicted RBP	2.66	□□□□□ -1.98
RPN9	YDR427W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	2.66	□□□□□ -1.98	not detected
RPN9	YDR427W	SRB2	P34162	210 aa		2.66	□□□□□ -1.98
RPN9	YDR427W	RCK1	P38622	512 aa		2.66	□□□□□ -1.98
RPN9	YDR427W	SMF2	P38778	549 aa		2.66	□□□□□ -1.98
RPN9	YDR427W	CPR7	P47103	393 aa		2.66	□□□□□ -1.98
RPN9	YDR427W	TAF6	P53040	516 aa		2.66	□□□□□ -1.98
RPN9	YDR427W	PXR1	P53335	271 aa	Predicted RBP	2.66	□□□□□ -1.98
RPN9	YDR427W	NRM1	P53718	249 aa		2.66	□□□□□ -1.98
RPN9	YDR427W	MGR3	Q04472	501 aa		2.66	□□□□□ -1.98
RPN9	YDR427W	STE23	Q06010	1027 aa		2.66	□□□□□ -1.98
RPN9	YDR427W	ECM19	Q06011	112 aa		2.66	□□□□□ -1.98
RPN9	YDR427W	YPR195C	Q06594	109 aa		2.66	□□□□□ -1.98
RPN9	YDR427W	BUD2	P33314	1104 aa		2.65	□□□□□ -1.99
RPN9	YDR427W	YKL187C	P34231	750 aa		2.65	□□□□□ -1.99
RPN9	YDR427W	YIR035C	P40579	254 aa		2.65	□□□□□ -1.99
RPN9	YDR427W	COS4	P43542	379 aa		2.65	□□□□□ -1.99
RPN9	YDR427W	SDS23	P53172	527 aa		2.65	□□□□□ -1.99
RPN9	YDR427W	DIB1	Q06819	143 aa	Predicted RBP	2.65	□□□□□ -1.99
RPN9	YDR427W	YPS3	Q12303	508 aa		2.65	□□□□□ -1.99
RPN9	YDR427W	PRM4	Q12498	284 aa		2.65	□□□□□ -1.99
RPN9	YDR427W	DFM1	Q12743	341 aa	Known RBP	2.65	□□□□□ -1.99
RPN9	YDR427W	BI3	Q9ZZW7	517 aa		2.65	□□□□□ -1.99
RPN9	YDR427W	FLO11	P08640	1367 aa		2.64	□□□□□ -1.99
RPN9	YDR427W	MHP1	P43638	1398 aa		2.64	□□□□□ -1.99
RPN9	YDR427W	GAL3	P13045	520 aa		2.64	□□□□□ -1.99
RPN9	YDR427W	RBK1	P25332	333 aa		2.64	□□□□□ -1.99
RPN9	YDR427W	ACB1	P31787	87 aa		2.64	□□□□□ -1.99
RPN9	YDR427W	IME2	P32581	645 aa		2.64	□□□□□ -1.99
RPN9	YDR427W	BDH1	P39714	382 aa		2.64	□□□□□ -1.99
RPN9	YDR427W	MIC19	P43594	170 aa		2.64	□□□□□ -1.99
RPN9	YDR427W	PMT4	P46971	762 aa		2.64	□□□□□ -1.99
RPN9	YDR427W	HCH1	P53834	153 aa		2.64	□□□□□ -1.99
RPN9	YDR427W	INP1	Q03694	420 aa		2.64	□□□□□ -1.99
RPN9	YDR427W	VPS20	Q04272	221 aa		2.64	□□□□□ -1.99
RPN9	YDR427W	UTP15	Q04305	513 aa	Known RBP	2.64	□□□□□ -1.99
RPN9	YDR427W	VTI1	Q04338	217 aa		2.64	□□□□□ -1.99
RPN9	YDR427W	GMC1	Q04399	608 aa		2.64	□□□□□ -1.99
RPN9	YDR427W	MRX9	Q07349	420 aa	Known RBP	2.64	□□□□□ -1.99
RPN9	YDR427W	YLR012C	Q07927	99 aa		2.64	□□□□□ -1.99
RPN9	YDR427W	RDL2	Q08742	149 aa	Known RBP	2.64	□□□□□ -1.99
RPN9	YDR427W	REX3	Q12090	404 aa		2.64	□□□□□ -1.99
RPN9	YDR427W	RFM1	Q12192	310 aa		2.64	□□□□□ -1.99
RPN9	YDR427W	CTA1	P15202	515 aa		2.63	□□□□□ -1.99
RPN9	YDR427W	RPB9	P27999	122 aa		2.63	□□□□□ -1.99
RPN9	YDR427W	SUR1	P33300	382 aa		2.63	□□□□□ -1.99
RPN9	YDR427W	ZRT3	P34240	503 aa		2.63	□□□□□ -1.99
RPN9	YDR427W	KTI12	P34253	313 aa	Known RBP	2.63	□□□□□ -1.99
RPN9	YDR427W	AST1	P35183	429 aa		2.63	□□□□□ -1.99
RPN9	YDR427W	POP2	P39008	433 aa		2.63	□□□□□ -1.99
RPN9	YDR427W	SMD1	Q02260	146 aa	Predicted RBP	2.63	□□□□□ -1.99

Retrieved 100 of 5,963 RNA–protein pairs in 96.9 ms