RNA–Protein interactions for RNA: YDR393W

SHE9, Transcript of Protein required for normal mitochondrial morphology, yeast

Gene SHE9, Length 1,371 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE9	YDR393W	SRN2	Q99176	213 aa		1.81	□□□□□ -2.12
SHE9	YDR393W	YBT1	P32386	1661 aa		1.8	□□□□□ -2.12
SHE9	YDR393W	RPS23A	P0CX29	145 aa	Known RBP	1.8	□□□□□ -2.12
SHE9	YDR393W	RPS23B	P0CX30	145 aa		1.8	□□□□□ -2.12
SHE9	YDR393W	UNG1	P12887	359 aa		1.8	□□□□□ -2.12
SHE9	YDR393W	CTK3	P46963	296 aa	Predicted RBP	1.8	□□□□□ -2.12
SHE9	YDR393W	MRX11	Q03079	207 aa		1.8	□□□□□ -2.12
SHE9	YDR393W	NOP6	Q07623	225 aa	Known RBP	1.8	□□□□□ -2.12
SHE9	YDR393W	YDL109C	Q12103	647 aa		1.8	□□□□□ -2.12
SHE9	YDR393W	YPR117W	Q06116	2489 aa		1.8	□□□□□ -2.12
SHE9	YDR393W	GEA1	P47102	1408 aa	Predicted RBP	1.79	□□□□□ -2.12
SHE9	YDR393W	MNE1	P24720	663 aa		1.79	□□□□□ -2.12
SHE9	YDR393W	MPE1	P35728	441 aa	Known RBP	1.79	□□□□□ -2.12
SHE9	YDR393W	SHE1	P38200	338 aa		1.79	□□□□□ -2.12
SHE9	YDR393W	YBL028C	P38202	106 aa		1.79	□□□□□ -2.12
SHE9	YDR393W	SPP381	P38282	291 aa	Predicted RBP	1.79	□□□□□ -2.12
SHE9	YDR393W	MLH1	P38920	769 aa		1.79	□□□□□ -2.12
SHE9	YDR393W	LCB2	P40970	561 aa		1.79	□□□□□ -2.12
SHE9	YDR393W	VTI1	Q04338	217 aa		1.79	□□□□□ -2.12
SHE9	YDR393W	SHS1	Q07657	551 aa		1.79	□□□□□ -2.12
SHE9	YDR393W	TY1B-NL2	Q99337	1749 aa	Known RBP	1.79	□□□□□ -2.12
SHE9	YDR393W	IML1	P47170	1584 aa		1.79	□□□□□ -2.12
SHE9	YDR393W	PDR5	P33302	1511 aa	Known RBP	1.78	□□□□□ -2.12
SHE9	YDR393W	RPL23A	P0CX41	137 aa	Known RBP	1.78	□□□□□ -2.12
SHE9	YDR393W	RPL23B	P0CX42	137 aa	Known RBP	1.78	□□□□□ -2.12
SHE9	YDR393W	EFM4	P40516	257 aa		1.78	□□□□□ -2.12
SHE9	YDR393W	YGR015C	P53208	328 aa		1.78	□□□□□ -2.12
SHE9	YDR393W	SLT2	Q00772	484 aa		1.78	□□□□□ -2.12
SHE9	YDR393W	GAT3	Q07928	141 aa		1.78	□□□□□ -2.12
SHE9	YDR393W	ATP16	Q12165	160 aa		1.78	□□□□□ -2.12
SHE9	YDR393W	NUP188	P52593	1655 aa	Known RBP	1.77	□□□□□ -2.13
SHE9	YDR393W	FLO11	P08640	1367 aa		1.77	□□□□□ -2.13
SHE9	YDR393W	EFB1	P32471	206 aa	Known RBP	1.77	□□□□□ -2.13
SHE9	YDR393W	SSE1	P32589	693 aa	Known RBP	1.77	□□□□□ -2.13
SHE9	YDR393W	YKR015C	P36111	568 aa		1.77	□□□□□ -2.13
SHE9	YDR393W	YHR177W	P38867	453 aa		1.77	□□□□□ -2.13
SHE9	YDR393W	GDI1	P39958	451 aa	Known RBP	1.77	□□□□□ -2.13
SHE9	YDR393W	UFE1	P41834	346 aa		1.77	□□□□□ -2.13
SHE9	YDR393W	EPL1	P43572	832 aa		1.77	□□□□□ -2.13
SHE9	YDR393W	YLH47	Q06493	454 aa		1.77	□□□□□ -2.13
SHE9	YDR393W	PAR32	Q12515	295 aa	Known RBP	1.77	□□□□□ -2.13
SHE9	YDR393W	CAT8	P39113	1433 aa		1.77	□□□□□ -2.13
SHE9	YDR393W	STE2	D6VTK4	431 aa		1.76	□□□□□ -2.13
SHE9	YDR393W	YPS1	P32329	569 aa		1.76	□□□□□ -2.13
SHE9	YDR393W	ALK2	P32789	676 aa	Predicted RBP	1.76	□□□□□ -2.13
SHE9	YDR393W	YHR182W	P38870	785 aa		1.76	□□□□□ -2.13
SHE9	YDR393W	LYS12	P40495	371 aa	Known RBP	1.76	□□□□□ -2.13
SHE9	YDR393W	AIM23	P47015	356 aa		1.76	□□□□□ -2.13
SHE9	YDR393W	MLC1	P53141	149 aa		1.76	□□□□□ -2.13
SHE9	YDR393W	SED5	Q01590	340 aa		1.76	□□□□□ -2.13
SHE9	YDR393W	TY3B-I	Q7LHG5	1498 aa	Known RBP	1.76	□□□□□ -2.13
SHE9	YDR393W	CFT1	Q06632	1357 aa	Known RBP	1.75	□□□□□ -2.13
SHE9	YDR393W	RPL6B	P05739	176 aa	Known RBP	1.75	□□□□□ -2.13
SHE9	YDR393W	MIR1	P23641	311 aa	Known RBP	1.75	□□□□□ -2.13
SHE9	YDR393W	MKK1	P32490	508 aa		1.75	□□□□□ -2.13
SHE9	YDR393W	RAD23	P32628	398 aa	Known RBP	1.75	□□□□□ -2.13
SHE9	YDR393W	MDL1	P33310	695 aa		1.75	□□□□□ -2.13
SHE9	YDR393W	PEX5	P35056	612 aa		1.75	□□□□□ -2.13
SHE9	YDR393W	GDT1	P38301	280 aa	Predicted RBP	1.75	□□□□□ -2.13
SHE9	YDR393W	LRP1	P38801	184 aa	Known RBP	1.75	□□□□□ -2.13
SHE9	YDR393W	YJR054W	P47114	497 aa		1.75	□□□□□ -2.13
SHE9	YDR393W	CDH1	P53197	566 aa		1.75	□□□□□ -2.13
SHE9	YDR393W	NRM1	P53718	249 aa		1.75	□□□□□ -2.13
SHE9	YDR393W	RPL6A	Q02326	176 aa	Known RBP	1.75	□□□□□ -2.13
SHE9	YDR393W	YFH1	Q07540	174 aa		1.75	□□□□□ -2.13
SHE9	YDR393W	YOL075C	Q08234	1294 aa		1.75	□□□□□ -2.13
SHE9	YDR393W	TAO3	P40468	2376 aa		1.75	□□□□□ -2.13
SHE9	YDR393W	PHO84	P25297	587 aa	Known RBP	1.74	□□□□□ -2.13
SHE9	YDR393W	MSK1	P32048	576 aa		1.74	□□□□□ -2.13
SHE9	YDR393W	TKL2	P33315	681 aa		1.74	□□□□□ -2.13
SHE9	YDR393W	SNL1	P40548	159 aa		1.74	□□□□□ -2.13
SHE9	YDR393W	MPS2	P53159	387 aa		1.74	□□□□□ -2.13
SHE9	YDR393W	RET3	P53600	189 aa		1.74	□□□□□ -2.13
SHE9	YDR393W	PEX27	Q08580	376 aa		1.74	□□□□□ -2.13
SHE9	YDR393W	YDL211C	Q12121	372 aa		1.74	□□□□□ -2.13
SHE9	YDR393W	UBA3	Q99344	299 aa		1.74	□□□□□ -2.13
SHE9	YDR393W	VAM7	P32912	316 aa		1.73	□□□□□ -2.13
SHE9	YDR393W	BDH1	P39714	382 aa		1.73	□□□□□ -2.13
SHE9	YDR393W	RAD9	P14737	1309 aa		1.73	□□□□□ -2.13
SHE9	YDR393W	SRB8	P25648	1427 aa		1.73	□□□□□ -2.13
SHE9	YDR393W	PSO2	P30620	661 aa		1.72	□□□□□ -2.13
SHE9	YDR393W	PMT2	P31382	759 aa		1.72	□□□□□ -2.13
SHE9	YDR393W	ATG12	P38316	186 aa		1.72	□□□□□ -2.13
SHE9	YDR393W	GGC1	P38988	300 aa		1.72	□□□□□ -2.13
SHE9	YDR393W	RBG1	P39729	369 aa		1.72	□□□□□ -2.13
SHE9	YDR393W	MOB2	P43563	287 aa		1.72	□□□□□ -2.13
SHE9	YDR393W	RSC1	P53236	928 aa		1.72	□□□□□ -2.13
SHE9	YDR393W	RGM1	Q00453	211 aa		1.72	□□□□□ -2.13
SHE9	YDR393W	API2	Q04413	109 aa		1.72	□□□□□ -2.13
SHE9	YDR393W	YOL029C	Q08187	201 aa		1.72	□□□□□ -2.13
SHE9	YDR393W	ERP4	Q12450	207 aa		1.72	□□□□□ -2.13
SHE9	YDR393W	DET1	Q99288	334 aa	Known RBP	1.72	□□□□□ -2.13
SHE9	YDR393W	FSH3	Q99369	266 aa		1.72	□□□□□ -2.13
SHE9	YDR393W	TOR1	P35169	2470 aa		1.72	□□□□□ -2.13
SHE9	YDR393W	BGL2	P15703	313 aa	Known RBP	1.72	□□□□□ -2.13
SHE9	YDR393W	COX10	P21592	462 aa		1.72	□□□□□ -2.13
SHE9	YDR393W	DBR1	P24309	405 aa	Known RBP	1.72	□□□□□ -2.13
SHE9	YDR393W	URA10	P30402	227 aa		1.72	□□□□□ -2.13
SHE9	YDR393W	SEC28	P40509	296 aa	Known RBP	1.72	□□□□□ -2.13
SHE9	YDR393W	MIX17	Q03667	156 aa		1.72	□□□□□ -2.13

Retrieved 100 of 5,963 RNA–protein pairs in 89.7 ms