RNA–Protein interactions for RNA: YAR002W

NUP60, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP60, Length 1,620 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP60	YAR002W	DCP1	Q12517	231 aa	Predicted RBP	3.15	□□□□□ -1.9
NUP60	YAR002W	CCH1	P50077	2039 aa		3.15	□□□□□ -1.9
NUP60	YAR002W	COX3	P00420	269 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	CDC31	P06704	161 aa	Known RBP	3.15	□□□□□ -1.91
NUP60	YAR002W	GAL7	P08431	366 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	RED1	P14291	827 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	THR1	P17423	357 aa	Known RBP	3.15	□□□□□ -1.91
NUP60	YAR002W	RPB5	P20434	215 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	PPH21	P23594	369 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	BUD23	P25627	275 aa	Predicted RBP	3.15	□□□□□ -1.91
NUP60	YAR002W	YJU2	P28320	278 aa	Predicted RBP	3.15	□□□□□ -1.91
NUP60	YAR002W	ARO7	P32178	256 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	DAL3	P32459	195 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	NDC1	P32500	655 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	SUI1	P32911	108 aa	Known RBP	3.15	□□□□□ -1.91
NUP60	YAR002W	YPT7	P32939	208 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	PFS1	P38872	237 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	MDM31	P38880	579 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	YAL037W	P39728	267 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	GDI1	P39958	451 aa	Known RBP	3.15	□□□□□ -1.91
NUP60	YAR002W	PCL6	P40038	420 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	BUR6	P40096	142 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	TIF34	P40217	347 aa	Known RBP	3.15	□□□□□ -1.91
NUP60	YAR002W	NUP57	P48837	541 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	IMD4	P50094	524 aa	Known RBP	3.15	□□□□□ -1.91
NUP60	YAR002W	IMD3	P50095	523 aa	Known RBP	3.15	□□□□□ -1.91
NUP60	YAR002W	CWC23	P52868	283 aa	Predicted RBP	3.15	□□□□□ -1.91
NUP60	YAR002W	HOS2	P53096	452 aa	Predicted RBP	3.15	□□□□□ -1.91
NUP60	YAR002W	MPC1	P53157	130 aa	Known RBP	3.15	□□□□□ -1.91
NUP60	YAR002W	FHN1	P53279	174 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	MEP3	P53390	489 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	RCF1	Q03713	159 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	YMR087W	Q04299	284 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	YML096W	Q04489	525 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	RQC1	Q05468	723 aa	Known RBP	3.15	□□□□□ -1.91
NUP60	YAR002W	YPS7	Q06325	596 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	VPS36	Q06696	566 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	FDH1	Q08911	376 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	THP3	Q12049	470 aa	Known RBP	3.15	□□□□□ -1.91
NUP60	YAR002W	DAP1	Q12091	152 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	ACF2	Q12168	779 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	YOL107W	Q12239	342 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	POM34	Q12445	299 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	YKL033W-A	Q86ZR7	236 aa		3.15	□□□□□ -1.91
NUP60	YAR002W	SLH1	P53327	1967 aa	Known RBP	3.14	□□□□□ -1.91
NUP60	YAR002W	CAR2	P07991	424 aa	Known RBP	3.14	□□□□□ -1.91
NUP60	YAR002W	MET2	P08465	486 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	YOL163W	P0CF20	169 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	YCK1	P23291	538 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	MGR1	P25573	417 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	CMK1	P27466	446 aa	Known RBP	3.14	□□□□□ -1.91
NUP60	YAR002W	SKN1	P33336	771 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	OAR1	P35731	278 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	FMP46	P36141	133 aa	Known RBP	3.14	□□□□□ -1.91
NUP60	YAR002W	EHT1	P38295	451 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	YHR035W	P38769	630 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	CHS7	P38843	316 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	BAT1	P38891	393 aa	Known RBP	3.14	□□□□□ -1.91
NUP60	YAR002W	LYS1	P38998	373 aa	RIP-Chip data	3.14	□□□□□ -1.91	not detected
NUP60	YAR002W	PIG2	P40187	538 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	LRO1	P40345	661 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	RPL10	P41805	221 aa	Known RBP	3.14	□□□□□ -1.91
NUP60	YAR002W	QRI7	P43122	407 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	IRC7	P43623	340 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	ART5	P53244	586 aa	Known RBP	3.14	□□□□□ -1.91
NUP60	YAR002W	RBG2	P53295	368 aa	Known RBP	3.14	□□□□□ -1.91
NUP60	YAR002W	COS1	P53822	381 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	PEX10	Q05568	337 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	STP4	Q07351	490 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	MMT2	Q08970	484 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	3.14	□□□□□ -1.91	not detected
NUP60	YAR002W	LAG2	Q92325	660 aa		3.14	□□□□□ -1.91
NUP60	YAR002W	MEX67	Q99257	599 aa	Known RBP	3.14	□□□□□ -1.91
NUP60	YAR002W	HOM2	P13663	365 aa	Known RBP	3.13	□□□□□ -1.91
NUP60	YAR002W	CBS1	P14066	229 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	GCN3	P14741	305 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	SNF6	P18888	332 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	PRP28	P23394	588 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	PTP1	P25044	335 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	TAH1	P25638	111 aa	Predicted RBP	3.13	□□□□□ -1.91
NUP60	YAR002W	CDC13	P32797	924 aa	Known RBP	3.13	□□□□□ -1.91
NUP60	YAR002W	RCN1	P36054	211 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	SRX1	P36077	127 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	SRO77	P38163	1010 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	WSC4	P38739	605 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	IPI1	P38803	334 aa	Predicted RBP	3.13	□□□□□ -1.91
NUP60	YAR002W	NVJ1	P38881	321 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	MNL1	P38888	796 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	AIM10	P39965	576 aa	Known RBP	3.13	□□□□□ -1.91
NUP60	YAR002W	YJL218W	P40892	196 aa	Known RBP	3.13	□□□□□ -1.91
NUP60	YAR002W	BUD8	P41698	603 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	IRC6	P43615	237 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	BAT2	P47176	376 aa	Known RBP	3.13	□□□□□ -1.91
NUP60	YAR002W	AAD10	P47182	288 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	RPS12	P48589	143 aa	Known RBP	3.13	□□□□□ -1.91
NUP60	YAR002W	LSG1	P53145	640 aa	Known RBP	3.13	□□□□□ -1.91
NUP60	YAR002W	MKC7	P53379	596 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	BUD17	P53727	317 aa		3.13	□□□□□ -1.91
NUP60	YAR002W	DBP6	P53734	629 aa	Known RBP	3.13	□□□□□ -1.91
NUP60	YAR002W	TIM44	Q01852	431 aa		3.13	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 57.6 ms