RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 TBK1Q9UHD2 729 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 TACC3Q9Y6A5 838 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 DDX39AO00148 427 aaKnown RBP11.22□□□□□ -0.61
LIG1-220ENST00000601091 TRIM37O94972 964 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 POLR2MP0CAP2 368 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 PBX1P40424 430 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 HERVK_113P62684 666 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 SMUG1Q53HV7 270 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 ODR4Q5SWX8 454 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 CAPRIN2Q6IMN6 1127 aaKnown RBP11.22□□□□□ -0.61
LIG1-220ENST00000601091 CENPPQ6IPU0 288 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 NDUFAF2Q8N183 169 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 MRRFQ96E11 262 aaKnown RBP11.22□□□□□ -0.61
LIG1-220ENST00000601091 HPCAL4Q9UM19 191 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 CNTNAP4Q9C0A0 1308 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 SPEF2Q9C093 1822 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 USP11P51784 963 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 CDK17Q00537 523 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 ZNF543Q08ER8 600 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 RUBCNQ92622 972 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 ANKS1AQ92625 1134 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 KIFAP3Q92845 792 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 CHUKO15111 745 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 GFPT2O94808 682 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 FGRP09769 529 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 SMTNP53814 917 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 KAZNQ674X7 775 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 ZNF304Q9HCX3 659 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 SAMD15Q9P1V8 674 aa11.22□□□□□ -0.61
LIG1-220ENST00000601091 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.22□□□□□ -0.61
LIG1-220ENST00000601091 SMIM24O75264 130 aa11.21□□□□□ -0.61
LIG1-220ENST00000601091 PLEKP08567 350 aaPredicted RBP11.21□□□□□ -0.61
LIG1-220ENST00000601091 BMP3P12645 472 aa11.21□□□□□ -0.61
LIG1-220ENST00000601091 ARHGAP4P98171 946 aa11.21□□□□□ -0.61
LIG1-220ENST00000601091 KNOP1Q1ED39 458 aaKnown RBP11.21□□□□□ -0.61
LIG1-220ENST00000601091 NAA35Q5VZE5 725 aa11.21□□□□□ -0.61
LIG1-220ENST00000601091 TTBK2Q6IQ55 1244 aa11.21□□□□□ -0.61
LIG1-220ENST00000601091 PACS1Q6VY07 963 aa11.21□□□□□ -0.61
LIG1-220ENST00000601091 BARGINQ6ZT62 677 aa11.21□□□□□ -0.61
LIG1-220ENST00000601091 TNFRSF25Q93038 417 aa11.21□□□□□ -0.61
LIG1-220ENST00000601091 CCDC169A6NNP5 214 aa11.21□□□□□ -0.61
LIG1-220ENST00000601091 RNF225M0QZC1 329 aaPredicted RBP11.21□□□□□ -0.61
LIG1-220ENST00000601091 MYCP01106 439 aaPredicted RBP11.21□□□□□ -0.61
LIG1-220ENST00000601091 SLC18A3Q16572 532 aa11.21□□□□□ -0.61
LIG1-220ENST00000601091 QRICH1Q2TAL8 776 aa11.21□□□□□ -0.61
LIG1-220ENST00000601091 PPP4R3AQ6IN85 833 aa11.21□□□□□ -0.61
LIG1-220ENST00000601091 ADAT2Q7Z6V5 191 aaKnown RBP11.21□□□□□ -0.61
LIG1-220ENST00000601091 SFR1Q86XK3 245 aa11.21□□□□□ -0.61
LIG1-220ENST00000601091 CCDC105Q8IYK2 499 aa11.21□□□□□ -0.61
LIG1-220ENST00000601091 SPICE1Q8N0Z3 855 aa11.21□□□□□ -0.61
LIG1-220ENST00000601091 MMGT1Q8N4V1 131 aa11.21□□□□□ -0.61
LIG1-220ENST00000601091 PDGFDQ9GZP0 370 aaPredicted RBP11.21□□□□□ -0.61
LIG1-220ENST00000601091 ZMAT5Q9UDW3 170 aaKnown RBP11.21□□□□□ -0.61
LIG1-220ENST00000601091 NID2Q14112 1375 aa11.21□□□□□ -0.61
LIG1-220ENST00000601091 MAP2K7O14733 419 aa11.21□□□□□ -0.62
LIG1-220ENST00000601091 NR1D1P20393 614 aa11.21□□□□□ -0.62
LIG1-220ENST00000601091 EIF2B5Q13144 721 aaKnown RBP11.21□□□□□ -0.62
LIG1-220ENST00000601091 GRB10Q13322 594 aa11.21□□□□□ -0.62
LIG1-220ENST00000601091 IL17AQ16552 155 aa11.21□□□□□ -0.62
LIG1-220ENST00000601091 HSP90AA5PQ58FG0 334 aa11.21□□□□□ -0.62
LIG1-220ENST00000601091 DENND2CQ68D51 928 aa11.21□□□□□ -0.62
LIG1-220ENST00000601091 TRIM50Q86XT4 487 aa11.21□□□□□ -0.62
LIG1-220ENST00000601091 FAM20AQ96MK3 541 aa11.21□□□□□ -0.62
LIG1-220ENST00000601091 SEMA6BQ9H3T3 888 aa11.21□□□□□ -0.62
LIG1-220ENST00000601091 MRPL11Q9Y3B7 192 aaKnown RBP11.21□□□□□ -0.62
LIG1-220ENST00000601091 DAGLAQ9Y4D2 1042 aa11.21□□□□□ -0.62
LIG1-220ENST00000601091 CAPN7Q9Y6W3 813 aa11.21□□□□□ -0.62
LIG1-220ENST00000601091 ABCB11O95342 1321 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 SPATA31A5Q5VU36 1347 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 SPATA31A7Q8IWB4 1347 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 ESYT3A0FGR9 886 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 GRID2IPA4D2P6 1211 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 POTEFA5A3E0 1075 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 CCDC188H7C350 402 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 CYTH3O43739 400 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 POTEIP0CG38 1075 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 ZFXP17010 805 aaPredicted RBP11.2□□□□□ -0.62
LIG1-220ENST00000601091 CUL1Q13616 776 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 POTEGQ6S5H5 508 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 POTEEQ6S8J3 1075 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 NLGN1Q8N2Q7 840 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 DCAF4Q8WV16 495 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 AP1M1Q9BXS5 423 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 SYNCQ9H7C4 482 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.2□□□□□ -0.62
LIG1-220ENST00000601091 PARVGQ9HBI0 331 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 PLCB1Q9NQ66 1216 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 FAM114A2Q9NRY5 505 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 EHD2Q9NZN4 543 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 EXOC7Q9UPT5 735 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 H0YIN7 160 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 ACTN3Q08043 901 aaPredicted RBP11.2□□□□□ -0.62
LIG1-220ENST00000601091 GKAP1Q5VSY0 366 aaPredicted RBP11.2□□□□□ -0.62
LIG1-220ENST00000601091 SYDE2Q5VT97 1194 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 ANKRD13BQ86YJ7 626 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 TNIP2Q8NFZ5 429 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 RHBDL2Q9NX52 303 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 PARP2Q9UGN5 583 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 MCM8Q9UJA3 840 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms