RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W YAH1Q12184 172 aaKnown RBP7.51□□□□□ -1.21
ATG4YNL223W RSF2P46974 1380 aa7.51□□□□□ -1.21
ATG4YNL223W FUN12P39730 1002 aaKnown RBP7.5□□□□□ -1.21
ATG4YNL223W APP1P53933 587 aa7.5□□□□□ -1.21
ATG4YNL223W SIR4P11978 1358 aa7.49□□□□□ -1.21
ATG4YNL223W NTH2P35172 780 aa7.49□□□□□ -1.21
ATG4YNL223W YNL050CP53952 270 aa7.49□□□□□ -1.21
ATG4YNL223W NAB6Q03735 1134 aaKnown RBP RIP-Chip data7.49□□□□□ -1.21not detected
ATG4YNL223W ENV9Q08651 330 aa7.49□□□□□ -1.21
ATG4YNL223W HSP104P31539 908 aaKnown RBP7.49□□□□□ -1.21
ATG4YNL223W RCR1P38212 213 aa7.49□□□□□ -1.21
ATG4YNL223W YRF1-3P0CX14 1859 aa7.48□□□□□ -1.21
ATG4YNL223W YRF1-7P0CX15 1859 aa7.48□□□□□ -1.21
ATG4YNL223W YRF1-6P53819 1859 aa7.48□□□□□ -1.21
ATG4YNL223W DCD1P06773 312 aa7.48□□□□□ -1.21
ATG4YNL223W CTF4Q01454 927 aa7.48□□□□□ -1.21
ATG4YNL223W IES2P40154 320 aa7.46□□□□□ -1.22
ATG4YNL223W AOS1Q06624 347 aa7.46□□□□□ -1.22
ATG4YNL223W MAM1P40065 302 aa7.44□□□□□ -1.22
ATG4YNL223W GYP7P48365 746 aa7.44□□□□□ -1.22
ATG4YNL223W ZDS1P50111 915 aaKnown RBP7.44□□□□□ -1.22
ATG4YNL223W INP54Q08227 384 aaKnown RBP7.44□□□□□ -1.22
ATG4YNL223W RRT14P40470 206 aa7.43□□□□□ -1.22
ATG4YNL223W YIL092WP40497 633 aa7.43□□□□□ -1.22
ATG4YNL223W IMH1Q06704 911 aaKnown RBP7.43□□□□□ -1.22
ATG4YNL223W NUP145P49687 1317 aa7.43□□□□□ -1.22
ATG4YNL223W UBP10P53874 792 aaPredicted RBP7.43□□□□□ -1.22
ATG4YNL223W EDE1P34216 1381 aa7.42□□□□□ -1.22
ATG4YNL223W RAD2P07276 1031 aa7.42□□□□□ -1.22
ATG4YNL223W ADE16P54113 591 aaKnown RBP7.42□□□□□ -1.22
ATG4YNL223W MEC3Q02574 474 aa7.42□□□□□ -1.22
ATG4YNL223W MAK21Q12176 1025 aaKnown RBP7.42□□□□□ -1.22
ATG4YNL223W DAL5P15365 543 aa7.41□□□□□ -1.22
ATG4YNL223W KCC4P25389 1037 aa7.41□□□□□ -1.22
ATG4YNL223W YKL133CP36066 463 aa7.41□□□□□ -1.22
ATG4YNL223W UGA3P26370 528 aa7.4□□□□□ -1.22
ATG4YNL223W BUD27P43573 796 aaKnown RBP RIP-Chip data7.4□□□□□ -1.22not detected
ATG4YNL223W SRT1Q03175 343 aa7.4□□□□□ -1.22
ATG4YNL223W BMS1Q08965 1183 aaKnown RBP7.4□□□□□ -1.22
ATG4YNL223W ROM2P51862 1356 aaKnown RBP7.4□□□□□ -1.23
ATG4YNL223W COQ4O13525 335 aa7.39□□□□□ -1.23
ATG4YNL223W OSM1P21375 501 aaKnown RBP7.39□□□□□ -1.23
ATG4YNL223W MAP2P38174 421 aaKnown RBP7.39□□□□□ -1.23
ATG4YNL223W YBR287WP38355 427 aa7.39□□□□□ -1.23
ATG4YNL223W NSE3Q05541 303 aa7.39□□□□□ -1.23
ATG4YNL223W LYS2P07702 1392 aa7.38□□□□□ -1.23
ATG4YNL223W OXP1P28273 1286 aa7.38□□□□□ -1.23
ATG4YNL223W FRK1Q03002 865 aaPredicted RBP7.38□□□□□ -1.23
ATG4YNL223W FPR3P38911 411 aaKnown RBP7.37□□□□□ -1.23
ATG4YNL223W YIL055CP40523 627 aaKnown RBP7.37□□□□□ -1.23
ATG4YNL223W DOT5P40553 215 aa7.37□□□□□ -1.23
ATG4YNL223W YFR016CP43597 1233 aaKnown RBP7.37□□□□□ -1.23
ATG4YNL223W POL32P47110 350 aa7.36□□□□□ -1.23
ATG4YNL223W FOX2Q02207 900 aaKnown RBP7.36□□□□□ -1.23
ATG4YNL223W ATG13Q06628 738 aa7.36□□□□□ -1.23
ATG4YNL223W ALE1Q08548 619 aa7.36□□□□□ -1.23
ATG4YNL223W YOL057WQ08225 711 aa7.35□□□□□ -1.23
ATG4YNL223W RIM15P43565 1770 aa7.35□□□□□ -1.23
ATG4YNL223W COBP00163 385 aa7.34□□□□□ -1.23
ATG4YNL223W RAD4P14736 754 aa7.34□□□□□ -1.23
ATG4YNL223W YBP2P53169 641 aa7.34□□□□□ -1.23
ATG4YNL223W TRP5P00931 707 aaKnown RBP7.33□□□□□ -1.24
ATG4YNL223W YKR075CP36155 307 aa7.33□□□□□ -1.24
ATG4YNL223W YPP1P46951 817 aa7.33□□□□□ -1.24
ATG4YNL223W CSI1Q04368 295 aa7.33□□□□□ -1.24
ATG4YNL223W PUF6Q04373 656 aaKnown RBP7.32□□□□□ -1.24
ATG4YNL223W RPS19AP07280 144 aaKnown RBP7.31□□□□□ -1.24
ATG4YNL223W RPS19BP07281 144 aaPredicted RBP7.31□□□□□ -1.24
ATG4YNL223W ZDS2P54786 942 aa7.31□□□□□ -1.24
ATG4YNL223W RMT2Q03305 412 aa7.31□□□□□ -1.24
ATG4YNL223W YDR306CQ06640 478 aa7.31□□□□□ -1.24
ATG4YNL223W BCH2P36122 765 aa7.3□□□□□ -1.24
ATG4YNL223W YGR122WP53272 402 aa7.3□□□□□ -1.24
ATG4YNL223W TUM1Q08686 304 aaKnown RBP7.3□□□□□ -1.24
ATG4YNL223W MRP7P12687 371 aa7.3□□□□□ -1.24
ATG4YNL223W RAD24P32641 659 aa7.3□□□□□ -1.24
ATG4YNL223W ILV3P39522 585 aaKnown RBP7.3□□□□□ -1.24
ATG4YNL223W GRX1P25373 110 aaKnown RBP7.29□□□□□ -1.24
ATG4YNL223W YNG2P38806 282 aaKnown RBP7.29□□□□□ -1.24
ATG4YNL223W DNM1P54861 757 aa7.29□□□□□ -1.24
ATG4YNL223W NOP53Q12080 455 aaKnown RBP7.29□□□□□ -1.24
ATG4YNL223W RPN11P43588 306 aaKnown RBP7.28□□□□□ -1.24
ATG4YNL223W SCY1P53009 804 aa7.28□□□□□ -1.24
ATG4YNL223W LAM6Q08001 693 aa7.28□□□□□ -1.24
ATG4YNL223W NOP8Q08287 484 aaPredicted RBP7.28□□□□□ -1.24
ATG4YNL223W SWI1P09547 1314 aa7.27□□□□□ -1.25
ATG4YNL223W RPC31P17890 251 aa7.27□□□□□ -1.25
ATG4YNL223W CST6P40535 587 aa7.27□□□□□ -1.25
ATG4YNL223W YJR008WP47085 338 aa7.27□□□□□ -1.25
ATG4YNL223W SPO1P53541 631 aa7.27□□□□□ -1.25
ATG4YNL223W YMR074CQ04773 145 aa7.27□□□□□ -1.25
ATG4YNL223W BOI2P39969 1040 aa7.26□□□□□ -1.25
ATG4YNL223W SSP2Q08646 371 aa7.26□□□□□ -1.25
ATG4YNL223W SWC3P31376 625 aa7.25□□□□□ -1.25
ATG4YNL223W PRP40P33203 583 aaKnown RBP7.25□□□□□ -1.25
ATG4YNL223W NUP133P36161 1157 aa7.25□□□□□ -1.25
ATG4YNL223W NPR2P39923 615 aa7.25□□□□□ -1.25
ATG4YNL223W VPS64Q03944 604 aa7.25□□□□□ -1.25
ATG4YNL223W YPR204WQ08995 1032 aa7.25□□□□□ -1.25
ATG4YNL223W PHM7Q12252 991 aa7.25□□□□□ -1.25
Retrieved 100 of 5,963 RNA–protein pairs in 7.9 ms