RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 WASHC2AQ641Q2 1341 aa5.74□□□□□ -1.49
SCN1A-220ENST00000641603 WASHC2CQ9Y4E1 1318 aa5.74□□□□□ -1.49
SCN1A-220ENST00000641603 BRD4O60885 1362 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-220ENST00000641603 CCDC18Q5T9S5 1454 aa5.74□□□□□ -1.49
SCN1A-220ENST00000641603 HMMRO75330 724 aa5.74□□□□□ -1.49
SCN1A-220ENST00000641603 REC8O95072 547 aa5.74□□□□□ -1.49
SCN1A-220ENST00000641603 TPM1P09493 284 aa5.74□□□□□ -1.49
SCN1A-220ENST00000641603 FRAT1Q92837 279 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-220ENST00000641603 DEF6Q9H4E7 631 aa5.74□□□□□ -1.49
SCN1A-220ENST00000641603 KIF7Q2M1P5 1343 aa5.74□□□□□ -1.49
SCN1A-220ENST00000641603 RDXP35241 583 aaKnown RBP5.74□□□□□ -1.49
SCN1A-220ENST00000641603 TAF7LQ5H9L4 462 aa5.73□□□□□ -1.49
SCN1A-220ENST00000641603 DCTN1Q14203 1278 aa5.73□□□□□ -1.49
SCN1A-220ENST00000641603 MCM2P49736 904 aa5.73□□□□□ -1.49
SCN1A-220ENST00000641603 PRIMPOLQ96LW4 560 aa5.73□□□□□ -1.49
SCN1A-220ENST00000641603 SMAP1Q8IYB5 467 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-220ENST00000641603 SASS6Q6UVJ0 657 aa5.73□□□□□ -1.49
SCN1A-220ENST00000641603 LEKR1Q6ZMV7 388 aa5.73□□□□□ -1.49
SCN1A-220ENST00000641603 ZMYND15Q9H091 742 aa5.73□□□□□ -1.49
SCN1A-220ENST00000641603 E9PSI1 815 aa5.73□□□□□ -1.49
SCN1A-220ENST00000641603 KIAA1211Q6ZU35 1233 aa5.73□□□□□ -1.49
SCN1A-220ENST00000641603 BACH2Q9BYV9 841 aa5.73□□□□□ -1.49
SCN1A-220ENST00000641603 DHX29Q7Z478 1369 aaKnown RBP5.72□□□□□ -1.49
SCN1A-220ENST00000641603 CENPJQ9HC77 1338 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-220ENST00000641603 CWC22Q9HCG8 908 aaKnown RBP5.71□□□□□ -1.49
SCN1A-220ENST00000641603 MIA2Q96PC5 1412 aa5.71□□□□□ -1.49
SCN1A-220ENST00000641603 GOLGA6L19H0YKK7 550 aa5.71□□□□□ -1.5
SCN1A-220ENST00000641603 STAC3Q96MF2 364 aa5.71□□□□□ -1.5
SCN1A-220ENST00000641603 ERLIN1O75477 346 aa5.71□□□□□ -1.5
SCN1A-220ENST00000641603 TRAK2O60296 914 aa5.71□□□□□ -1.5
SCN1A-220ENST00000641603 ROCK1Q13464 1354 aa5.71□□□□□ -1.5
SCN1A-220ENST00000641603 TUBB4AP04350 444 aa5.71□□□□□ -1.5
SCN1A-220ENST00000641603 CCDC191Q8NCU4 936 aa5.71□□□□□ -1.5
SCN1A-220ENST00000641603 EIF3JO75822 258 aaKnown RBP5.7□□□□□ -1.5
SCN1A-220ENST00000641603 BRPF3Q9ULD4 1205 aa5.7□□□□□ -1.5
SCN1A-220ENST00000641603 RBM28Q9NW13 759 aaKnown RBP5.7□□□□□ -1.5
SCN1A-220ENST00000641603 CGNQ9P2M7 1197 aaKnown RBP5.7□□□□□ -1.5
SCN1A-220ENST00000641603 NAT10Q9H0A0 1025 aaKnown RBP5.7□□□□□ -1.5
SCN1A-220ENST00000641603 CAGE1Q8TC20 777 aa5.7□□□□□ -1.5
SCN1A-220ENST00000641603 GRPEL1Q9HAV7 217 aa5.7□□□□□ -1.5
SCN1A-220ENST00000641603 R3HCC1Q9Y3T6 440 aaKnown RBP5.7□□□□□ -1.5
SCN1A-220ENST00000641603 NOC3LQ8WTT2 800 aaKnown RBP5.7□□□□□ -1.5
SCN1A-220ENST00000641603 CCDC144AA2RUR9 1427 aa5.69□□□□□ -1.5
SCN1A-220ENST00000641603 MNS1Q8NEH6 495 aa5.69□□□□□ -1.5
SCN1A-220ENST00000641603 DDX11Q96FC9 970 aa5.69□□□□□ -1.5
SCN1A-220ENST00000641603 POLR3GO15318 223 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-220ENST00000641603 UACAQ9BZF9 1416 aa5.69□□□□□ -1.5
SCN1A-220ENST00000641603 GOLGA6L7A0A1B0GV03 622 aa5.69□□□□□ -1.5
SCN1A-220ENST00000641603 GBP3Q9H0R5 595 aa5.69□□□□□ -1.5
SCN1A-220ENST00000641603 DDX19BQ9UMR2 479 aa5.69□□□□□ -1.5
SCN1A-220ENST00000641603 TUBB4BP68371 445 aa5.68□□□□□ -1.5
SCN1A-220ENST00000641603 SCAPERQ9BY12 1400 aa5.68□□□□□ -1.5
SCN1A-220ENST00000641603 INCENPQ9NQS7 918 aa5.68□□□□□ -1.5
SCN1A-220ENST00000641603 NEMFO60524 1076 aa5.68□□□□□ -1.5
SCN1A-220ENST00000641603 CT47B1P0C2W7 299 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-220ENST00000641603 MFAP1P55081 439 aaKnown RBP5.68□□□□□ -1.5
SCN1A-220ENST00000641603 NBPF1Q3BBV0 1214 aa5.68□□□□□ -1.5
SCN1A-220ENST00000641603 UQCRHLA0A096LP55 91 aa5.68□□□□□ -1.5
SCN1A-220ENST00000641603 UQCRHP07919 91 aa5.68□□□□□ -1.5
SCN1A-220ENST00000641603 TIGD1Q96MW7 591 aa5.68□□□□□ -1.5
SCN1A-220ENST00000641603 CLGNO14967 610 aa5.68□□□□□ -1.5
SCN1A-220ENST00000641603 KCNJ4P48050 445 aa5.68□□□□□ -1.5
SCN1A-220ENST00000641603 LMOD3Q0VAK6 560 aa5.68□□□□□ -1.5
SCN1A-220ENST00000641603 CUX1P39880 1505 aa5.68□□□□□ -1.5
SCN1A-220ENST00000641603 SSR1P43307 286 aaKnown RBP5.68□□□□□ -1.5
SCN1A-220ENST00000641603 FGD1P98174 961 aa5.68□□□□□ -1.5
SCN1A-220ENST00000641603 CAVIN2O95810 425 aa5.68□□□□□ -1.5
SCN1A-220ENST00000641603 HOOK1Q9UJC3 728 aaKnown RBP5.68□□□□□ -1.5
SCN1A-220ENST00000641603 RRBP1Q9P2E9 1410 aaKnown RBP5.68□□□□□ -1.5
SCN1A-220ENST00000641603 BECN2A8MW95 431 aa5.68□□□□□ -1.5
SCN1A-220ENST00000641603 ZRSR2Q15696 482 aaKnown RBP5.68□□□□□ -1.5
SCN1A-220ENST00000641603 TSR1Q2NL82 804 aaKnown RBP5.67□□□□□ -1.5
SCN1A-220ENST00000641603 GPATCH3Q96I76 525 aa5.67□□□□□ -1.5
SCN1A-220ENST00000641603 RABEP1Q15276 862 aa5.67□□□□□ -1.5
SCN1A-220ENST00000641603 ATAD2Q6PL18 1390 aa5.67□□□□□ -1.5
SCN1A-220ENST00000641603 IRX3P78415 501 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-220ENST00000641603 SIN3AQ96ST3 1273 aa5.67□□□□□ -1.5
SCN1A-220ENST00000641603 TSPY26PQ9H489 355 aa5.67□□□□□ -1.5
SCN1A-220ENST00000641603 IPO7O95373 1038 aaKnown RBP5.67□□□□□ -1.5
SCN1A-220ENST00000641603 CC2D1BQ5T0F9 858 aaKnown RBP5.67□□□□□ -1.5
SCN1A-220ENST00000641603 KIAA0754O94854 1291 aa5.67□□□□□ -1.5
SCN1A-220ENST00000641603 CCDC112Q8NEF3 446 aa5.67□□□□□ -1.5
SCN1A-220ENST00000641603 FEZ1Q99689 392 aa5.67□□□□□ -1.5
SCN1A-220ENST00000641603 PDE3AQ14432 1141 aa5.66□□□□□ -1.5
SCN1A-220ENST00000641603 PLEKHH1Q9ULM0 1364 aa5.66□□□□□ -1.5
SCN1A-220ENST00000641603 KIF21BO75037 1637 aa5.66□□□□□ -1.5
SCN1A-220ENST00000641603 H0YHG0 523 aa5.66□□□□□ -1.5
SCN1A-220ENST00000641603 TXLNBQ8N3L3 684 aa5.66□□□□□ -1.5
SCN1A-220ENST00000641603 TOP2AP11388 1531 aaKnown RBP5.66□□□□□ -1.5
SCN1A-220ENST00000641603 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.66□□□□□ -1.5
SCN1A-220ENST00000641603 POTEB2H3BUK9 544 aa5.66□□□□□ -1.5
SCN1A-220ENST00000641603 MCM3P25205 808 aa5.66□□□□□ -1.5
SCN1A-220ENST00000641603 RBM25P49756 843 aaKnown RBP5.66□□□□□ -1.5
SCN1A-220ENST00000641603 CCDC7Q96M83 1385 aa5.66□□□□□ -1.5
SCN1A-220ENST00000641603 PDCP20941 246 aa5.66□□□□□ -1.5
SCN1A-220ENST00000641603 AMER1Q5JTC6 1135 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-220ENST00000641603 KLHL34Q8N239 644 aa5.66□□□□□ -1.5
SCN1A-220ENST00000641603 ANKRD20A12PQ8NF67 263 aa5.66□□□□□ -1.5
SCN1A-220ENST00000641603 CCDC94Q9BW85 323 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-220ENST00000641603 C22orf23Q9BZE7 217 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms