RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 RSPH4AQ5TD94 716 aa7.63□□□□□ -1.19
SCN1A-217ENST00000637988 CREBRFQ8IUR6 639 aa7.63□□□□□ -1.19
SCN1A-217ENST00000637988 SYAP1Q96A49 352 aaPredicted RBP7.63□□□□□ -1.19
SCN1A-217ENST00000637988 U2AF1L5P0DN76 240 aaPredicted RBP7.62□□□□□ -1.19
SCN1A-217ENST00000637988 U2AF1Q01081 240 aaKnown RBP eCLIP7.62□□□□□ -1.19
SCN1A-217ENST00000637988 APBB1O00213 710 aa7.62□□□□□ -1.19
SCN1A-217ENST00000637988 TPD52L1Q16890 204 aaPredicted RBP7.62□□□□□ -1.19
SCN1A-217ENST00000637988 HIRIP3Q9BW71 556 aaPredicted RBP7.62□□□□□ -1.19
SCN1A-217ENST00000637988 GOLGA6L1Q8N7Z2 621 aa7.62□□□□□ -1.19
SCN1A-217ENST00000637988 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.62□□□□□ -1.19
SCN1A-217ENST00000637988 KTN1Q86UP2 1357 aaKnown RBP7.62□□□□□ -1.19
SCN1A-217ENST00000637988 ANKRD30AQ9BXX3 1397 aa7.62□□□□□ -1.19
SCN1A-217ENST00000637988 PPP4R2Q9NY27 417 aa7.62□□□□□ -1.19
SCN1A-217ENST00000637988 RGS3P49796 1198 aa7.61□□□□□ -1.19
SCN1A-217ENST00000637988 WWC1Q8IX03 1113 aa7.61□□□□□ -1.19
SCN1A-217ENST00000637988 TPM3P06753 285 aa7.61□□□□□ -1.19
SCN1A-217ENST00000637988 DHX16O60231 1041 aaKnown RBP7.61□□□□□ -1.19
SCN1A-217ENST00000637988 CARMIL1Q5VZK9 1371 aa7.61□□□□□ -1.19
SCN1A-217ENST00000637988 TEFQ10587 303 aa7.61□□□□□ -1.19
SCN1A-217ENST00000637988 CCDC18Q5T9S5 1454 aa7.6□□□□□ -1.19
SCN1A-217ENST00000637988 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.6□□□□□ -1.19
SCN1A-217ENST00000637988 CCDC47Q96A33 483 aaKnown RBP7.6□□□□□ -1.19
SCN1A-217ENST00000637988 SOGA1O94964 1423 aa7.6□□□□□ -1.19
SCN1A-217ENST00000637988 PES1O00541 588 aaKnown RBP7.59□□□□□ -1.19
SCN1A-217ENST00000637988 ITPRIPQ8IWB1 547 aa7.59□□□□□ -1.19
SCN1A-217ENST00000637988 SLC4A10Q6U841 1118 aa7.59□□□□□ -1.19
SCN1A-217ENST00000637988 PAF1Q8N7H5 531 aa7.59□□□□□ -1.19
SCN1A-217ENST00000637988 MSNP26038 577 aaKnown RBP7.59□□□□□ -1.19
SCN1A-217ENST00000637988 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.59□□□□□ -1.19
SCN1A-217ENST00000637988 COG3Q96JB2 828 aa7.59□□□□□ -1.19
SCN1A-217ENST00000637988 IRX6P78412 446 aaPredicted RBP7.59□□□□□ -1.19
SCN1A-217ENST00000637988 FMN1Q68DA7 1419 aa7.59□□□□□ -1.19
SCN1A-217ENST00000637988 NUTM2FA1L443 756 aa7.59□□□□□ -1.19
SCN1A-217ENST00000637988 DDX58O95786 925 aaKnown RBP7.58□□□□□ -1.2
SCN1A-217ENST00000637988 KIF16BQ96L93 1317 aa7.58□□□□□ -1.2
SCN1A-217ENST00000637988 ERICH2A1L162 156 aa7.58□□□□□ -1.2
SCN1A-217ENST00000637988 TMEM132AQ24JP5 1023 aa7.58□□□□□ -1.2
SCN1A-217ENST00000637988 ODF2Q5BJF6 829 aa7.58□□□□□ -1.2
SCN1A-217ENST00000637988 ERICH6BQ5W0A0 696 aa7.58□□□□□ -1.2
SCN1A-217ENST00000637988 DCAF1Q9Y4B6 1507 aa7.58□□□□□ -1.2
SCN1A-217ENST00000637988 TPM1P09493 284 aa7.58□□□□□ -1.2
SCN1A-217ENST00000637988 SF3A1Q15459 793 aaKnown RBP7.58□□□□□ -1.2
SCN1A-217ENST00000637988 CPLX2Q6PUV4 134 aaKnown RBP7.58□□□□□ -1.2
SCN1A-217ENST00000637988 TRIM29Q14134 588 aa7.57□□□□□ -1.2
SCN1A-217ENST00000637988 FAM69CQ0P6D2 419 aa7.57□□□□□ -1.2
SCN1A-217ENST00000637988 SAMD1Q6SPF0 538 aaPredicted RBP7.57□□□□□ -1.2
SCN1A-217ENST00000637988 H3BQV1 296 aa7.56□□□□□ -1.2
SCN1A-217ENST00000637988 IFFO2Q5TF58 517 aa7.56□□□□□ -1.2
SCN1A-217ENST00000637988 NUP155O75694 1391 aa7.56□□□□□ -1.2
SCN1A-217ENST00000637988 VGFO15240 615 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-217ENST00000637988 CCDC70Q6NSX1 233 aa7.56□□□□□ -1.2
SCN1A-217ENST00000637988 RWDD1Q9H446 243 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-217ENST00000637988 APPP05067 770 aa7.56□□□□□ -1.2
SCN1A-217ENST00000637988 IKQ13123 557 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-217ENST00000637988 C9orf78Q9NZ63 289 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-217ENST00000637988 AMER1Q5JTC6 1135 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-217ENST00000637988 RDXP35241 583 aaKnown RBP7.55□□□□□ -1.2
SCN1A-217ENST00000637988 HOOK1Q9UJC3 728 aaKnown RBP7.55□□□□□ -1.2
SCN1A-217ENST00000637988 FBXO3Q9UK99 471 aa7.55□□□□□ -1.2
SCN1A-217ENST00000637988 GBP4Q96PP9 640 aa7.55□□□□□ -1.2
SCN1A-217ENST00000637988 ABCC8Q09428 1581 aa7.55□□□□□ -1.2
SCN1A-217ENST00000637988 PHF14O94880 888 aa7.55□□□□□ -1.2
SCN1A-217ENST00000637988 TRDNQ13061 729 aa7.55□□□□□ -1.2
SCN1A-217ENST00000637988 RAPGEF4Q8WZA2 1011 aa7.55□□□□□ -1.2
SCN1A-217ENST00000637988 PKD2Q13563 968 aa7.55□□□□□ -1.2
SCN1A-217ENST00000637988 ANKRD20A12PQ8NF67 263 aa7.55□□□□□ -1.2
SCN1A-217ENST00000637988 EVC2Q86UK5 1308 aa7.54□□□□□ -1.2
SCN1A-217ENST00000637988 KIF6Q6ZMV9 814 aa7.54□□□□□ -1.2
SCN1A-217ENST00000637988 NGEFQ8N5V2 710 aa7.54□□□□□ -1.2
SCN1A-217ENST00000637988 CT47A1Q5JQC4 288 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-217ENST00000637988 NUTM2DQ5VT03 806 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-217ENST00000637988 FAM184AQ8NB25 1140 aa7.54□□□□□ -1.2
SCN1A-217ENST00000637988 SMG6Q86US8 1419 aaKnown RBP7.54□□□□□ -1.2
SCN1A-217ENST00000637988 TRIM21P19474 475 aaKnown RBP7.54□□□□□ -1.2
SCN1A-217ENST00000637988 PMFBP1Q8TBY8 1022 aa7.54□□□□□ -1.2
SCN1A-217ENST00000637988 GPRASP1Q5JY77 1395 aa7.53□□□□□ -1.2
SCN1A-217ENST00000637988 PIP4K2BP78356 416 aa7.53□□□□□ -1.2
SCN1A-217ENST00000637988 TMEM87AQ8NBN3 555 aa7.53□□□□□ -1.2
SCN1A-217ENST00000637988 SPDYE4A6NLX3 237 aa7.53□□□□□ -1.2
SCN1A-217ENST00000637988 SLC3A2P08195 630 aaKnown RBP7.53□□□□□ -1.2
SCN1A-217ENST00000637988 PAXIP1Q6ZW49 1069 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-217ENST00000637988 EPS15P42566 896 aa7.52□□□□□ -1.21
SCN1A-217ENST00000637988 PCMTD1Q96MG8 357 aaPredicted RBP7.52□□□□□ -1.21
SCN1A-217ENST00000637988 BRMS1Q9HCU9 246 aa7.52□□□□□ -1.21
SCN1A-217ENST00000637988 CGNL1Q0VF96 1302 aa7.52□□□□□ -1.21
SCN1A-217ENST00000637988 IPO7O95373 1038 aaKnown RBP7.51□□□□□ -1.21
SCN1A-217ENST00000637988 RALBP1Q15311 655 aa7.51□□□□□ -1.21
SCN1A-217ENST00000637988 NAP1L5Q96NT1 182 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-217ENST00000637988 SETD5Q9C0A6 1442 aa7.51□□□□□ -1.21
SCN1A-217ENST00000637988 CCDC27Q2M243 656 aa7.51□□□□□ -1.21
SCN1A-217ENST00000637988 C16orf71Q8IYS4 520 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-217ENST00000637988 RUFY2Q8WXA3 655 aa7.51□□□□□ -1.21
SCN1A-217ENST00000637988 DNAI2Q9GZS0 605 aa7.51□□□□□ -1.21
SCN1A-217ENST00000637988 ST18O60284 1047 aa7.51□□□□□ -1.21
SCN1A-217ENST00000637988 NFXL1Q6ZNB6 911 aa7.51□□□□□ -1.21
SCN1A-217ENST00000637988 NUTM2BA6NNL0 878 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-217ENST00000637988 NUTM2EB1AL46 878 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-217ENST00000637988 PDE3BQ13370 1112 aa7.51□□□□□ -1.21
SCN1A-217ENST00000637988 POGZQ7Z3K3 1410 aa7.51□□□□□ -1.21
SCN1A-217ENST00000637988 NUTM2AQ8IVF1 878 aaPredicted RBP7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms