RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 GTF2A1P52655 376 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-216ENST00000637968 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-216ENST00000637968 MCM4P33991 863 aa7.16□□□□□ -1.26
SCN1A-216ENST00000637968 SPRYD3Q8NCJ5 442 aa7.16□□□□□ -1.26
SCN1A-216ENST00000637968 OS9Q13438 667 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-216ENST00000637968 CHMP5Q9NZZ3 219 aa7.16□□□□□ -1.26
SCN1A-216ENST00000637968 RRP1P56182 461 aaKnown RBP7.15□□□□□ -1.26
SCN1A-216ENST00000637968 PDCL2Q8N4E4 241 aa7.15□□□□□ -1.26
SCN1A-216ENST00000637968 RCAN3Q9UKA8 241 aa7.15□□□□□ -1.26
SCN1A-216ENST00000637968 ZBTB7CA1YPR0 619 aa7.15□□□□□ -1.26
SCN1A-216ENST00000637968 PHF14O94880 888 aa7.15□□□□□ -1.26
SCN1A-216ENST00000637968 CHRM1P11229 460 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-216ENST00000637968 RNF216Q9NWF9 866 aaPredicted RBP7.15□□□□□ -1.27
SCN1A-216ENST00000637968 AKNAQ7Z591 1439 aa7.14□□□□□ -1.27
SCN1A-216ENST00000637968 SMG6Q86US8 1419 aaKnown RBP7.14□□□□□ -1.27
SCN1A-216ENST00000637968 TICAM2Q86XR7 235 aa7.14□□□□□ -1.27
SCN1A-216ENST00000637968 HSCBQ8IWL3 235 aa7.14□□□□□ -1.27
SCN1A-216ENST00000637968 MYCNP04198 464 aaPredicted RBP7.14□□□□□ -1.27
SCN1A-216ENST00000637968 MCCP23508 829 aa7.14□□□□□ -1.27
SCN1A-216ENST00000637968 RIPK4P57078 832 aa7.14□□□□□ -1.27
SCN1A-216ENST00000637968 CTR9Q6PD62 1173 aa7.14□□□□□ -1.27
SCN1A-216ENST00000637968 ZSCAN20P17040 1043 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-216ENST00000637968 TPRNQ4KMQ1 711 aa7.13□□□□□ -1.27
SCN1A-216ENST00000637968 CCDC39Q9UFE4 941 aa7.13□□□□□ -1.27
SCN1A-216ENST00000637968 KTN1Q86UP2 1357 aaKnown RBP7.13□□□□□ -1.27
SCN1A-216ENST00000637968 SSR1P43307 286 aaKnown RBP7.13□□□□□ -1.27
SCN1A-216ENST00000637968 XPCQ01831 940 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-216ENST00000637968 CENPQQ7L2Z9 268 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-216ENST00000637968 FAM50AQ14320 339 aaKnown RBP7.12□□□□□ -1.27
SCN1A-216ENST00000637968 GPATCH11Q8N954 259 aa7.12□□□□□ -1.27
SCN1A-216ENST00000637968 MYCBPQ99417 103 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-216ENST00000637968 DIAPH3Q9NSV4 1193 aa7.12□□□□□ -1.27
SCN1A-216ENST00000637968 FSD2A1L4K1 749 aa7.12□□□□□ -1.27
SCN1A-216ENST00000637968 SPDYE4A6NLX3 237 aa7.12□□□□□ -1.27
SCN1A-216ENST00000637968 MCM5P33992 734 aa7.12□□□□□ -1.27
SCN1A-216ENST00000637968 EIF4G2P78344 907 aaKnown RBP eCLIP7.12□□□□□ -1.27
SCN1A-216ENST00000637968 NOM1Q5C9Z4 860 aaKnown RBP7.12□□□□□ -1.27
SCN1A-216ENST00000637968 TAOK2Q9UL54 1235 aa7.12□□□□□ -1.27
SCN1A-216ENST00000637968 BAZ1AQ9NRL2 1556 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-216ENST00000637968 IRX5P78411 483 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-216ENST00000637968 FOXD1Q16676 465 aa7.12□□□□□ -1.27
SCN1A-216ENST00000637968 PSMD1Q99460 953 aa7.11□□□□□ -1.27
SCN1A-216ENST00000637968 CLIP1P30622 1438 aa7.11□□□□□ -1.27
SCN1A-216ENST00000637968 PDS5BQ9NTI5 1447 aa7.11□□□□□ -1.27
SCN1A-216ENST00000637968 SOX12O15370 315 aa7.11□□□□□ -1.27
SCN1A-216ENST00000637968 EFCC1Q9HA90 598 aa7.11□□□□□ -1.27
SCN1A-216ENST00000637968 ERICH4A6NGS2 130 aa7.1□□□□□ -1.27
SCN1A-216ENST00000637968 ZBTB22O15209 634 aa7.1□□□□□ -1.27
SCN1A-216ENST00000637968 IGSF3O75054 1194 aa7.1□□□□□ -1.27
SCN1A-216ENST00000637968 GABPB1Q06547 395 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-216ENST00000637968 PRIMPOLQ96LW4 560 aa7.1□□□□□ -1.27
SCN1A-216ENST00000637968 DEF6Q9H4E7 631 aa7.1□□□□□ -1.27
SCN1A-216ENST00000637968 HS1BP3Q53T59 392 aa7.1□□□□□ -1.27
SCN1A-216ENST00000637968 ZNF526Q8TF50 670 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-216ENST00000637968 YY1AP1Q9H869 796 aa7.1□□□□□ -1.27
SCN1A-216ENST00000637968 GOLIM4O00461 696 aa7.1□□□□□ -1.27
SCN1A-216ENST00000637968 HSP90AB3PQ58FF7 597 aa7.1□□□□□ -1.27
SCN1A-216ENST00000637968 HSP90AB1P08238 724 aaKnown RBP7.1□□□□□ -1.27
SCN1A-216ENST00000637968 TDO2P48775 406 aa7.1□□□□□ -1.27
SCN1A-216ENST00000637968 GEMIN8Q9NWZ8 242 aaKnown RBP7.1□□□□□ -1.27
SCN1A-216ENST00000637968 TRERF1Q96PN7 1200 aa7.09□□□□□ -1.27
SCN1A-216ENST00000637968 RBM28Q9NW13 759 aaKnown RBP7.09□□□□□ -1.27
SCN1A-216ENST00000637968 CECR2Q9BXF3 1484 aa7.09□□□□□ -1.27
SCN1A-216ENST00000637968 ARID3CA6NKF2 412 aa7.09□□□□□ -1.27
SCN1A-216ENST00000637968 TEX35Q5T0J7 233 aa7.09□□□□□ -1.27
SCN1A-216ENST00000637968 ZNF592Q92610 1267 aa7.09□□□□□ -1.27
SCN1A-216ENST00000637968 CWC15Q9P013 229 aaKnown RBP7.09□□□□□ -1.27
SCN1A-216ENST00000637968 FEZ1Q99689 392 aa7.09□□□□□ -1.27
SCN1A-216ENST00000637968 SLC20A2Q08357 652 aa7.08□□□□□ -1.28
SCN1A-216ENST00000637968 DDX49Q9Y6V7 483 aaKnown RBP7.08□□□□□ -1.28
SCN1A-216ENST00000637968 SENP3-EIF4A1A0A087X0R7 540 aa7.08□□□□□ -1.28
SCN1A-216ENST00000637968 ERBB4Q15303 1308 aa7.08□□□□□ -1.28
SCN1A-216ENST00000637968 PRKRIP1Q9H875 184 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-216ENST00000637968 CEP120Q8N960 986 aa7.07□□□□□ -1.28
SCN1A-216ENST00000637968 RSF1Q96T23 1441 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-216ENST00000637968 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-216ENST00000637968 TNNT1P13805 278 aa7.07□□□□□ -1.28
SCN1A-216ENST00000637968 GPS2Q13227 327 aa7.07□□□□□ -1.28
SCN1A-216ENST00000637968 MNS1Q8NEH6 495 aa7.07□□□□□ -1.28
SCN1A-216ENST00000637968 OGFRQ9NZT2 677 aa7.07□□□□□ -1.28
SCN1A-216ENST00000637968 ZNF777Q9ULD5 760 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-216ENST00000637968 NINLQ9Y2I6 1382 aa7.07□□□□□ -1.28
SCN1A-216ENST00000637968 CFAP44Q96MT7 982 aa7.07□□□□□ -1.28
SCN1A-216ENST00000637968 SLC4A1APQ9BWU0 796 aaKnown RBP7.07□□□□□ -1.28
SCN1A-216ENST00000637968 SMARCA2P51531 1590 aa7.07□□□□□ -1.28
SCN1A-216ENST00000637968 MFAP1P55081 439 aaKnown RBP7.06□□□□□ -1.28
SCN1A-216ENST00000637968 SLC26A8Q96RN1 970 aa7.06□□□□□ -1.28
SCN1A-216ENST00000637968 RASSF4Q9H2L5 321 aa7.06□□□□□ -1.28
SCN1A-216ENST00000637968 SMC4Q9NTJ3 1288 aa7.06□□□□□ -1.28
SCN1A-216ENST00000637968 MYRIPQ8NFW9 859 aa7.06□□□□□ -1.28
SCN1A-216ENST00000637968 ZBTB9Q96C00 473 aa7.06□□□□□ -1.28
SCN1A-216ENST00000637968 PDE3BQ13370 1112 aa7.05□□□□□ -1.28
SCN1A-216ENST00000637968 ZKSCAN5Q9Y2L8 839 aa7.05□□□□□ -1.28
SCN1A-216ENST00000637968 GOLGA3Q08378 1498 aa7.05□□□□□ -1.28
SCN1A-216ENST00000637968 PHLDB1Q86UU1 1377 aa7.05□□□□□ -1.28
SCN1A-216ENST00000637968 LOC102724159A0A0B4J2E5 919 aa7.05□□□□□ -1.28
SCN1A-216ENST00000637968 ZNF500O60304 480 aaPredicted RBP7.05□□□□□ -1.28
SCN1A-216ENST00000637968 PWP2Q15269 919 aaKnown RBP7.05□□□□□ -1.28
SCN1A-216ENST00000637968 CRBNQ96SW2 442 aa7.05□□□□□ -1.28
SCN1A-216ENST00000637968 NOL7Q9UMY1 257 aaKnown RBP7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms