RNA–Protein interactions for RNA: ENST00000637903.1

SPTAN1-238, Transcript of spectrin alpha, non-erythrocytic 1, human

TSL 5

Gene SPTAN1, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPTAN1-238	ENST00000637903	CAMSAP2	Q08AD1	1489 aa		13.18	□□□□□ -0.3
SPTAN1-238	ENST00000637903	DNMT1	P26358	1616 aa	Known RBP	13.18	□□□□□ -0.3
SPTAN1-238	ENST00000637903	KIF3B	O15066	747 aa		13.18	□□□□□ -0.3
SPTAN1-238	ENST00000637903	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.17	□□□□□ -0.3
SPTAN1-238	ENST00000637903	TNR	Q92752	1358 aa		13.16	□□□□□ -0.3
SPTAN1-238	ENST00000637903	PZP	P20742	1482 aa		13.16	□□□□□ -0.3
SPTAN1-238	ENST00000637903	ARHGEF5	Q12774	1597 aa		13.15	□□□□□ -0.3
SPTAN1-238	ENST00000637903	KDM5D	Q9BY66	1539 aa		13.15	□□□□□ -0.3
SPTAN1-238	ENST00000637903	WASHC2C	Q9Y4E1	1318 aa		13.14	□□□□□ -0.31
SPTAN1-238	ENST00000637903	UBAP1L	F5GYI3	381 aa		13.14	□□□□□ -0.31
SPTAN1-238	ENST00000637903	TSPY4	P0CV99	314 aa		13.14	□□□□□ -0.31
SPTAN1-238	ENST00000637903	TSPY10	P0CW01	314 aa		13.14	□□□□□ -0.31
SPTAN1-238	ENST00000637903	SOCS7	O14512	581 aa		13.13	□□□□□ -0.31
SPTAN1-238	ENST00000637903	MIA2	Q96PC5	1412 aa		13.13	□□□□□ -0.31
SPTAN1-238	ENST00000637903	SPATA31D1	Q6ZQQ2	1576 aa		13.12	□□□□□ -0.31
SPTAN1-238	ENST00000637903	LRRC9	Q6ZRR7	1453 aa		13.12	□□□□□ -0.31
SPTAN1-238	ENST00000637903	POLR1A	O95602	1720 aa	Predicted RBP	13.12	□□□□□ -0.31
SPTAN1-238	ENST00000637903	NEURL4	Q96JN8	1562 aa		13.11	□□□□□ -0.31
SPTAN1-238	ENST00000637903	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.11	□□□□□ -0.31
SPTAN1-238	ENST00000637903	VPS8	Q8N3P4	1428 aa		13.11	□□□□□ -0.31
SPTAN1-238	ENST00000637903	NLRP1	Q9C000	1473 aa		13.1	□□□□□ -0.31
SPTAN1-238	ENST00000637903	ANKLE2	Q86XL3	938 aa		13.1	□□□□□ -0.31
SPTAN1-238	ENST00000637903	MAST1	Q9Y2H9	1570 aa		13.1	□□□□□ -0.31
SPTAN1-238	ENST00000637903	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.09	□□□□□ -0.31
SPTAN1-238	ENST00000637903	MAP3K1	Q13233	1512 aa		13.09	□□□□□ -0.31
SPTAN1-238	ENST00000637903	RNF17	Q9BXT8	1623 aa	Known RBP	13.09	□□□□□ -0.31
SPTAN1-238	ENST00000637903	MED14	O60244	1454 aa		13.09	□□□□□ -0.31
SPTAN1-238	ENST00000637903	SHANK2	Q9UPX8	1470 aa		13.09	□□□□□ -0.31
SPTAN1-238	ENST00000637903	CPS1	P31327	1500 aa		13.08	□□□□□ -0.31
SPTAN1-238	ENST00000637903	UGGT1	Q9NYU2	1555 aa		13.07	□□□□□ -0.32
SPTAN1-238	ENST00000637903	DEPDC5	O75140	1603 aa		13.07	□□□□□ -0.32
SPTAN1-238	ENST00000637903	KANK4	Q5T7N3	995 aa	Predicted RBP	13.07	□□□□□ -0.32
SPTAN1-238	ENST00000637903	ABCC3	O15438	1527 aa		13.07	□□□□□ -0.32
SPTAN1-238	ENST00000637903	VWDE	Q8N2E2	1590 aa		13.06	□□□□□ -0.32
SPTAN1-238	ENST00000637903	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.06	□□□□□ -0.32
SPTAN1-238	ENST00000637903	ZC3H13	Q5T200	1668 aa	Known RBP	13.05	□□□□□ -0.32
SPTAN1-238	ENST00000637903	TOM1	O60784	492 aa		13.05	□□□□□ -0.32
SPTAN1-238	ENST00000637903	NPHP4	O75161	1426 aa	Predicted RBP	13.05	□□□□□ -0.32
SPTAN1-238	ENST00000637903	MYOM3	Q5VTT5	1437 aa		13.05	□□□□□ -0.32
SPTAN1-238	ENST00000637903	MROH1	Q8NDA8	1641 aa		13.04	□□□□□ -0.32
SPTAN1-238	ENST00000637903	ERVK-7	P63135	1459 aa		13.03	□□□□□ -0.32
SPTAN1-238	ENST00000637903	CFAP65	Q6ZU64	1925 aa	Known RBP	13.02	□□□□□ -0.32
SPTAN1-238	ENST00000637903	HSPA1L	P34931	641 aa		13.02	□□□□□ -0.33
SPTAN1-238	ENST00000637903	DUOX2	Q9NRD8	1548 aa		13.02	□□□□□ -0.33
SPTAN1-238	ENST00000637903	IQGAP1	P46940	1657 aa		13.01	□□□□□ -0.33
SPTAN1-238	ENST00000637903	PIP4K2B	P78356	416 aa		13	□□□□□ -0.33
SPTAN1-238	ENST00000637903	CEP152	O94986	1710 aa		12.99	□□□□□ -0.33
SPTAN1-238	ENST00000637903	ALK	Q9UM73	1620 aa		12.99	□□□□□ -0.33
SPTAN1-238	ENST00000637903	ARHGAP31	Q2M1Z3	1444 aa		12.99	□□□□□ -0.33
SPTAN1-238	ENST00000637903	STRCP1	A6NGW2	1772 aa		12.99	□□□□□ -0.33
SPTAN1-238	ENST00000637903	UBR1	Q8IWV7	1749 aa		12.99	□□□□□ -0.33
SPTAN1-238	ENST00000637903	ABCC5	O15440	1437 aa		12.98	□□□□□ -0.33
SPTAN1-238	ENST00000637903	SCAF1	Q9H7N4	1312 aa	Known RBP	12.98	□□□□□ -0.33
SPTAN1-238	ENST00000637903	KIF15	Q9NS87	1388 aa		12.97	□□□□□ -0.33
SPTAN1-238	ENST00000637903	PRDM15	P57071	1507 aa	Predicted RBP	12.97	□□□□□ -0.33
SPTAN1-238	ENST00000637903	LRRC7	Q96NW7	1537 aa		12.97	□□□□□ -0.33
SPTAN1-238	ENST00000637903	ARHGAP23	Q9P227	1491 aa		12.97	□□□□□ -0.33
SPTAN1-238	ENST00000637903	ERBIN	Q96RT1	1412 aa		12.96	□□□□□ -0.33
SPTAN1-238	ENST00000637903	LTK	P29376	864 aa		12.96	□□□□□ -0.33
SPTAN1-238	ENST00000637903	RRP7BP	Q9NSQ0	103 aa		12.96	□□□□□ -0.33
SPTAN1-238	ENST00000637903	SLIT1	O75093	1534 aa		12.96	□□□□□ -0.33
SPTAN1-238	ENST00000637903	CROCC2	H7BZ55	1655 aa		12.96	□□□□□ -0.34
SPTAN1-238	ENST00000637903	SCAF11	Q99590	1463 aa	Known RBP	12.95	□□□□□ -0.34
SPTAN1-238	ENST00000637903	PTPN23	Q9H3S7	1636 aa		12.95	□□□□□ -0.34
SPTAN1-238	ENST00000637903	MED1	Q15648	1581 aa	Predicted RBP	12.94	□□□□□ -0.34
SPTAN1-238	ENST00000637903	TXNDC2	Q86VQ3	553 aa		12.94	□□□□□ -0.34
SPTAN1-238	ENST00000637903	SYNM	O15061	1565 aa		12.94	□□□□□ -0.34
SPTAN1-238	ENST00000637903	DAPK1	P53355	1430 aa		12.93	□□□□□ -0.34
SPTAN1-238	ENST00000637903	FGD6	Q6ZV73	1430 aa		12.91	□□□□□ -0.34
SPTAN1-238	ENST00000637903	APLP2	Q06481	763 aa		12.91	□□□□□ -0.34
SPTAN1-238	ENST00000637903	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.91	□□□□□ -0.34	2e-7	■■■■□ 20.1
SPTAN1-238	ENST00000637903	EID1	Q9Y6B2	187 aa		12.91	□□□□□ -0.34
SPTAN1-238	ENST00000637903	LMTK2	Q8IWU2	1503 aa		12.91	□□□□□ -0.34
SPTAN1-238	ENST00000637903	KANK1	Q14678	1352 aa		12.91	□□□□□ -0.34
SPTAN1-238	ENST00000637903	PIK3C2B	O00750	1634 aa		12.9	□□□□□ -0.34
SPTAN1-238	ENST00000637903	TMEM2	Q9UHN6	1383 aa		12.9	□□□□□ -0.34
SPTAN1-238	ENST00000637903	KDM5A	P29375	1690 aa	Known RBP	12.89	□□□□□ -0.35
SPTAN1-238	ENST00000637903	IDI1	Q13907	227 aa		12.89	□□□□□ -0.35
SPTAN1-238	ENST00000637903	XIRP1	Q702N8	1843 aa	Known RBP	12.89	□□□□□ -0.35
SPTAN1-238	ENST00000637903	ANKRD30A	Q9BXX3	1397 aa		12.89	□□□□□ -0.35
SPTAN1-238	ENST00000637903	CHIC2	Q9UKJ5	165 aa		12.87	□□□□□ -0.35
SPTAN1-238	ENST00000637903	NOS1	P29475	1434 aa		12.87	□□□□□ -0.35
SPTAN1-238	ENST00000637903	STAG3	Q9UJ98	1225 aa		12.86	□□□□□ -0.35
SPTAN1-238	ENST00000637903	EFCAB6	Q5THR3	1501 aa		12.86	□□□□□ -0.35
SPTAN1-238	ENST00000637903	TET3	O43151	1660 aa		12.86	□□□□□ -0.35
SPTAN1-238	ENST00000637903	ADGRL2	O95490	1459 aa		12.85	□□□□□ -0.35
SPTAN1-238	ENST00000637903	KCNA6	P17658	529 aa		12.84	□□□□□ -0.35
SPTAN1-238	ENST00000637903	SLC52A1	Q9NWF4	448 aa		12.84	□□□□□ -0.35
SPTAN1-238	ENST00000637903	FAM135B	Q49AJ0	1406 aa		12.83	□□□□□ -0.36
SPTAN1-238	ENST00000637903	PHF23	Q9BUL5	403 aa	Predicted RBP	12.83	□□□□□ -0.36
SPTAN1-238	ENST00000637903	TMEM94	Q12767	1356 aa		12.81	□□□□□ -0.36
SPTAN1-238	ENST00000637903	RPRD2	Q5VT52	1461 aa	Known RBP	12.81	□□□□□ -0.36
SPTAN1-238	ENST00000637903	SLC26A8	Q96RN1	970 aa		12.81	□□□□□ -0.36
SPTAN1-238	ENST00000637903	SENP3	Q9H4L4	574 aa	Predicted RBP	12.81	□□□□□ -0.36
SPTAN1-238	ENST00000637903	ADGRB3	O60242	1522 aa		12.81	□□□□□ -0.36
SPTAN1-238	ENST00000637903	ANKRD50	Q9ULJ7	1429 aa		12.79	□□□□□ -0.36
SPTAN1-238	ENST00000637903	PROSER2	Q86WR7	435 aa	Predicted RBP	12.79	□□□□□ -0.36
SPTAN1-238	ENST00000637903	RGS17	Q9UGC6	210 aa	Predicted RBP	12.79	□□□□□ -0.36
SPTAN1-238	ENST00000637903	NWD1	Q149M9	1564 aa		12.78	□□□□□ -0.36
SPTAN1-238	ENST00000637903	FAM50A	Q14320	339 aa	Known RBP	12.78	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms