RNA–Protein interactions for RNA: ENST00000625716.2

TCF4-249, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 359 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-249ENST00000625716 PKD2Q13563 968 aa10.43□□□□□ -0.74
TCF4-249ENST00000625716 C3orf67Q6ZVT6 689 aa10.43□□□□□ -0.74
TCF4-249ENST00000625716 PCDH10Q9P2E7 1040 aa10.43□□□□□ -0.74
TCF4-249ENST00000625716 BOLA1Q9Y3E2 137 aa10.43□□□□□ -0.74
TCF4-249ENST00000625716 KCNH8Q96L42 1107 aa10.42□□□□□ -0.74
TCF4-249ENST00000625716 TMEM121BQ9BXQ6 578 aaPredicted RBP10.42□□□□□ -0.74
TCF4-249ENST00000625716 ZCCHC11Q5TAX3 1644 aaKnown RBP10.42□□□□□ -0.74
TCF4-249ENST00000625716 ABCA8O94911 1581 aa10.42□□□□□ -0.74
TCF4-249ENST00000625716 SAMD9Q5K651 1589 aa10.41□□□□□ -0.74
TCF4-249ENST00000625716 MS4A4AQ96JQ5 239 aa10.41□□□□□ -0.74
TCF4-249ENST00000625716 WDR7Q9Y4E6 1490 aa10.4□□□□□ -0.74
TCF4-249ENST00000625716 FHOD3Q2V2M9 1422 aa10.4□□□□□ -0.75
TCF4-249ENST00000625716 GLI2P10070 1586 aa10.39□□□□□ -0.75
TCF4-249ENST00000625716 EFCAB5A4FU69 1503 aa10.39□□□□□ -0.75
TCF4-249ENST00000625716 EPRSP07814 1512 aaKnown RBP10.39□□□□□ -0.75
TCF4-249ENST00000625716 SOX12O15370 315 aa10.38□□□□□ -0.75
TCF4-249ENST00000625716 PHF8Q9UPP1 1060 aa10.38□□□□□ -0.75
TCF4-249ENST00000625716 TSPOAP1O95153 1857 aa10.38□□□□□ -0.75
TCF4-249ENST00000625716 SNPHO15079 494 aa10.37□□□□□ -0.75
TCF4-249ENST00000625716 ATP1B4Q9UN42 357 aaPredicted RBP10.37□□□□□ -0.75
TCF4-249ENST00000625716 RAPGEF6Q8TEU7 1601 aa10.36□□□□□ -0.75
TCF4-249ENST00000625716 ATP10BO94823 1461 aa10.36□□□□□ -0.75
TCF4-249ENST00000625716 ECM2O94769 699 aaPredicted RBP10.36□□□□□ -0.75
TCF4-249ENST00000625716 TEX14Q8IWB6 1497 aa10.36□□□□□ -0.75
TCF4-249ENST00000625716 PLEKHD1A6NEE1 506 aa10.35□□□□□ -0.75
TCF4-249ENST00000625716 RGL2O15211 777 aa10.35□□□□□ -0.75
TCF4-249ENST00000625716 CDAN1Q8IWY9 1227 aa10.35□□□□□ -0.75
TCF4-249ENST00000625716 KDM6BO15054 1643 aa10.35□□□□□ -0.75
TCF4-249ENST00000625716 CD109Q6YHK3 1445 aa10.34□□□□□ -0.75
TCF4-249ENST00000625716 TMEM92Q6UXU6 159 aa10.34□□□□□ -0.75
TCF4-249ENST00000625716 MARVELD3Q96A59 401 aa10.34□□□□□ -0.75
TCF4-249ENST00000625716 BCL11BQ9C0K0 894 aaPredicted RBP10.34□□□□□ -0.75
TCF4-249ENST00000625716 FMN1Q68DA7 1419 aa10.33□□□□□ -0.76
TCF4-249ENST00000625716 NUP153P49790 1475 aaKnown RBP10.32□□□□□ -0.76
TCF4-249ENST00000625716 HOXB3P14651 431 aaPredicted RBP10.32□□□□□ -0.76
TCF4-249ENST00000625716 MICALL2Q8IY33 904 aa10.32□□□□□ -0.76
TCF4-249ENST00000625716 FBXO22Q8NEZ5 403 aa10.32□□□□□ -0.76
TCF4-249ENST00000625716 MAP3K4Q9Y6R4 1608 aa10.32□□□□□ -0.76
TCF4-249ENST00000625716 CDK11AQ9UQ88 783 aaPredicted RBP10.31□□□□□ -0.76
TCF4-249ENST00000625716 ARHGAP35Q9NRY4 1499 aa10.3□□□□□ -0.76
TCF4-249ENST00000625716 G3V3G9 751 aa10.3□□□□□ -0.76
TCF4-249ENST00000625716 STK24Q9Y6E0 443 aa10.3□□□□□ -0.76
TCF4-249ENST00000625716 MAGI3Q5TCQ9 1506 aa10.29□□□□□ -0.76
TCF4-249ENST00000625716 CFAP43Q8NDM7 1665 aa10.29□□□□□ -0.76
TCF4-249ENST00000625716 PPRC1Q5VV67 1664 aaKnown RBP10.28□□□□□ -0.76
TCF4-249ENST00000625716 MFRPQ9BY79 579 aa10.28□□□□□ -0.76
TCF4-249ENST00000625716 POTEB3A0JP26 581 aa10.27□□□□□ -0.77
TCF4-249ENST00000625716 STK25O00506 426 aa10.27□□□□□ -0.77
TCF4-249ENST00000625716 POTEBQ6S5H4 581 aa10.27□□□□□ -0.77
TCF4-249ENST00000625716 HECW1Q76N89 1606 aa10.26□□□□□ -0.77
TCF4-249ENST00000625716 PHLDB1Q86UU1 1377 aa10.26□□□□□ -0.77
TCF4-249ENST00000625716 CLIP1P30622 1438 aa10.25□□□□□ -0.77
TCF4-249ENST00000625716 NLRP6P59044 892 aa10.25□□□□□ -0.77
TCF4-249ENST00000625716 TAOK2Q9UL54 1235 aa10.25□□□□□ -0.77
TCF4-249ENST00000625716 ABCA9Q8IUA7 1624 aa10.25□□□□□ -0.77
TCF4-249ENST00000625716 CDK13Q14004 1512 aaKnown RBP10.24□□□□□ -0.77
TCF4-249ENST00000625716 COL17A1Q9UMD9 1497 aaPredicted RBP10.23□□□□□ -0.77
TCF4-249ENST00000625716 CASKIN1Q8WXD9 1431 aa10.22□□□□□ -0.77
TCF4-249ENST00000625716 EMP3P54852 163 aa10.21□□□□□ -0.77
TCF4-249ENST00000625716 NEO1Q92859 1461 aa10.21□□□□□ -0.78
TCF4-249ENST00000625716 CCDC18Q5T9S5 1454 aa10.2□□□□□ -0.78
TCF4-249ENST00000625716 ARAP3Q8WWN8 1544 aa10.2□□□□□ -0.78
TCF4-249ENST00000625716 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.19□□□□□ -0.78
TCF4-249ENST00000625716 RAPGEF3O95398 923 aa10.19□□□□□ -0.78
TCF4-249ENST00000625716 HS3ST6Q96QI5 342 aa10.19□□□□□ -0.78
TCF4-249ENST00000625716 FANCAO15360 1455 aa10.18□□□□□ -0.78
TCF4-249ENST00000625716 TROQ12816 1431 aaPredicted RBP10.18□□□□□ -0.78
TCF4-249ENST00000625716 LOC105371045A0A1W2PR82 267 aa10.18□□□□□ -0.78
TCF4-249ENST00000625716 FAM205CA6NFA0 338 aa10.18□□□□□ -0.78
TCF4-249ENST00000625716 HOXB1P14653 301 aaPredicted RBP10.18□□□□□ -0.78
TCF4-249ENST00000625716 EFCAB2Q5VUJ9 269 aa10.18□□□□□ -0.78
TCF4-249ENST00000625716 FYCO1Q9BQS8 1478 aa10.17□□□□□ -0.78
TCF4-249ENST00000625716 CEP162Q5TB80 1403 aa10.17□□□□□ -0.78
TCF4-249ENST00000625716 AKNAQ7Z591 1439 aa10.17□□□□□ -0.78
TCF4-249ENST00000625716 KDM4FA0A1W2PPD8 638 aa10.17□□□□□ -0.78
TCF4-249ENST00000625716 PCF11O94913 1555 aaKnown RBP10.17□□□□□ -0.78
TCF4-249ENST00000625716 CFAP74Q9C0B2 1584 aa10.17□□□□□ -0.78
TCF4-249ENST00000625716 PLCH2O75038 1416 aa10.16□□□□□ -0.78
TCF4-249ENST00000625716 KIF14Q15058 1648 aa10.16□□□□□ -0.78
TCF4-249ENST00000625716 DOK7Q18PE1 504 aa10.16□□□□□ -0.78
TCF4-249ENST00000625716 TTC37Q6PGP7 1564 aa10.16□□□□□ -0.78
TCF4-249ENST00000625716 DENND4BO75064 1496 aaPredicted RBP10.16□□□□□ -0.78
TCF4-249ENST00000625716 PPP1R37O75864 691 aa10.15□□□□□ -0.78
TCF4-249ENST00000625716 ZNF710Q8N1W2 664 aa10.14□□□□□ -0.79
TCF4-249ENST00000625716 KRTAP3-3Q9BYR6 98 aa10.14□□□□□ -0.79
TCF4-249ENST00000625716 KRTAP3-2Q9BYR7 98 aa10.14□□□□□ -0.79
TCF4-249ENST00000625716 ARID4BQ4LE39 1312 aaPredicted RBP10.13□□□□□ -0.79
TCF4-249ENST00000625716 ADGRL1O94910 1474 aa10.13□□□□□ -0.79
TCF4-249ENST00000625716 SPNS2Q8IVW8 549 aa10.13□□□□□ -0.79
TCF4-249ENST00000625716 MYT1LQ9UL68 1186 aa10.13□□□□□ -0.79
TCF4-249ENST00000625716 SCAPERQ9BY12 1400 aa10.13□□□□□ -0.79
TCF4-249ENST00000625716 ARHGAP5Q13017 1502 aa10.12□□□□□ -0.79
TCF4-249ENST00000625716 KIF3CO14782 793 aa10.12□□□□□ -0.79
TCF4-249ENST00000625716 GPR153Q6NV75 609 aa10.12□□□□□ -0.79
TCF4-249ENST00000625716 MTUS2Q5JR59 1369 aa10.12□□□□□ -0.79
TCF4-249ENST00000625716 LRRIQ1Q96JM4 1722 aa10.11□□□□□ -0.79
TCF4-249ENST00000625716 MYO5CQ9NQX4 1742 aa10.11□□□□□ -0.79
TCF4-249ENST00000625716 ZNF777Q9ULD5 760 aaPredicted RBP10.1□□□□□ -0.79
TCF4-249ENST00000625716 C2orf72A6NCS6 295 aa10.09□□□□□ -0.79
TCF4-249ENST00000625716 HS6ST3Q8IZP7 471 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms