RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 KDM2AQ9Y2K7 1162 aa11.62□□□□□ -0.55
VCL-207ENST00000624354 ARHGEF12Q9NZN5 1544 aa11.62□□□□□ -0.55
VCL-207ENST00000624354 CARMIL2Q6F5E8 1435 aa11.61□□□□□ -0.55
VCL-207ENST00000624354 LRPPRCP42704 1394 aaKnown RBP11.61□□□□□ -0.55
VCL-207ENST00000624354 DCAF11Q8TEB1 546 aa11.61□□□□□ -0.55
VCL-207ENST00000624354 C9orf84Q5VXU9 1444 aa11.6□□□□□ -0.55
VCL-207ENST00000624354 ADCY10Q96PN6 1610 aa11.6□□□□□ -0.55
VCL-207ENST00000624354 IPO9Q96P70 1041 aaKnown RBP11.6□□□□□ -0.55
VCL-207ENST00000624354 ZBTB47Q9UFB7 747 aaPredicted RBP11.6□□□□□ -0.55
VCL-207ENST00000624354 CROCC2H7BZ55 1655 aa11.6□□□□□ -0.55
VCL-207ENST00000624354 SHANK2Q9UPX8 1470 aa11.59□□□□□ -0.55
VCL-207ENST00000624354 CYB5RLQ6IPT4 315 aa11.59□□□□□ -0.55
VCL-207ENST00000624354 RRP1P56182 461 aaKnown RBP11.58□□□□□ -0.56
VCL-207ENST00000624354 NLRP13Q86W25 1043 aa11.57□□□□□ -0.56
VCL-207ENST00000624354 MAGI1Q96QZ7 1491 aaPredicted RBP11.57□□□□□ -0.56
VCL-207ENST00000624354 RCAN3Q9UKA8 241 aa11.56□□□□□ -0.56
VCL-207ENST00000624354 KDM5DQ9BY66 1539 aa11.56□□□□□ -0.56
VCL-207ENST00000624354 PDE3BQ13370 1112 aa11.56□□□□□ -0.56
VCL-207ENST00000624354 SYNJ2O15056 1496 aa11.55□□□□□ -0.56
VCL-207ENST00000624354 OSCARQ8IYS5 282 aa11.55□□□□□ -0.56
VCL-207ENST00000624354 PTPRGP23470 1445 aa11.55□□□□□ -0.56
VCL-207ENST00000624354 CEP170Q5SW79 1584 aa11.54□□□□□ -0.56
VCL-207ENST00000624354 HNRNPMP52272 730 aaKnown RBP eCLIP11.54□□□□□ -0.561e-6■■■■□ 22.5
VCL-207ENST00000624354 EXOC6Q8TAG9 804 aa11.54□□□□□ -0.56
VCL-207ENST00000624354 ABCC10Q5T3U5 1492 aa11.54□□□□□ -0.56
VCL-207ENST00000624354 TCERG1O14776 1098 aaKnown RBP11.54□□□□□ -0.56
VCL-207ENST00000624354 ATP10BO94823 1461 aa11.53□□□□□ -0.56
VCL-207ENST00000624354 PARD3Q8TEW0 1356 aa11.52□□□□□ -0.56
VCL-207ENST00000624354 CDC42BPAQ5VT25 1732 aa11.52□□□□□ -0.57
VCL-207ENST00000624354 CCDC144AA2RUR9 1427 aa11.51□□□□□ -0.57
VCL-207ENST00000624354 NUP160Q12769 1436 aa11.51□□□□□ -0.57
VCL-207ENST00000624354 ERCC6L2Q5T890 1561 aa11.5□□□□□ -0.57
VCL-207ENST00000624354 RSPH4AQ5TD94 716 aa11.5□□□□□ -0.57
VCL-207ENST00000624354 WASHC2CQ9Y4E1 1318 aa11.5□□□□□ -0.57
VCL-207ENST00000624354 PRAG1Q86YV5 1406 aa11.5□□□□□ -0.57
VCL-207ENST00000624354 EIF5BO60841 1220 aaKnown RBP11.5□□□□□ -0.57
VCL-207ENST00000624354 RGL3Q3MIN7 710 aa11.5□□□□□ -0.57
VCL-207ENST00000624354 PER1O15534 1290 aaPredicted RBP11.5□□□□□ -0.57
VCL-207ENST00000624354 ABCA8O94911 1581 aa11.49□□□□□ -0.57
VCL-207ENST00000624354 NPM2Q86SE8 214 aaKnown RBP11.49□□□□□ -0.57
VCL-207ENST00000624354 E9PCH4 1651 aa11.49□□□□□ -0.57
VCL-207ENST00000624354 ARHGEF5Q12774 1597 aa11.49□□□□□ -0.57
VCL-207ENST00000624354 FAM135AQ9P2D6 1515 aa11.49□□□□□ -0.57
VCL-207ENST00000624354 MS4A1P11836 297 aa11.48□□□□□ -0.57
VCL-207ENST00000624354 NBPF1Q3BBV0 1214 aa11.48□□□□□ -0.57
VCL-207ENST00000624354 CCDC141Q6ZP82 1450 aa11.48□□□□□ -0.57
VCL-207ENST00000624354 PDE4AP27815 886 aa11.48□□□□□ -0.57
VCL-207ENST00000624354 USP35Q9P2H5 1018 aa11.48□□□□□ -0.57
VCL-207ENST00000624354 NEFMP07197 916 aa11.47□□□□□ -0.57
VCL-207ENST00000624354 CC2D1BQ5T0F9 858 aaKnown RBP11.47□□□□□ -0.57
VCL-207ENST00000624354 CDCA7LQ96GN5 454 aa11.47□□□□□ -0.57
VCL-207ENST00000624354 GPRASP1Q5JY77 1395 aa11.47□□□□□ -0.57
VCL-207ENST00000624354 INSRP06213 1382 aa11.46□□□□□ -0.57
VCL-207ENST00000624354 CHD1O14646 1710 aa11.46□□□□□ -0.57
VCL-207ENST00000624354 BACH2Q9BYV9 841 aa11.46□□□□□ -0.58
VCL-207ENST00000624354 TMF1P82094 1093 aa11.45□□□□□ -0.58
VCL-207ENST00000624354 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.45□□□□□ -0.58
VCL-207ENST00000624354 COL17A1Q9UMD9 1497 aaPredicted RBP11.45□□□□□ -0.58
VCL-207ENST00000624354 TRPM1Q7Z4N2 1603 aa11.45□□□□□ -0.58
VCL-207ENST00000624354 TESK2Q96S53 571 aa11.45□□□□□ -0.58
VCL-207ENST00000624354 PANK3Q9H999 370 aa11.45□□□□□ -0.58
VCL-207ENST00000624354 DISP3Q9P2K9 1392 aa11.44□□□□□ -0.58
VCL-207ENST00000624354 LAS1LQ9Y4W2 734 aaKnown RBP11.43□□□□□ -0.58
VCL-207ENST00000624354 ZMYM4Q5VZL5 1548 aa11.43□□□□□ -0.58
VCL-207ENST00000624354 A2MP01023 1474 aa11.43□□□□□ -0.58
VCL-207ENST00000624354 PLIN1O60240 522 aa11.43□□□□□ -0.58
VCL-207ENST00000624354 BLMP54132 1417 aaPredicted RBP11.43□□□□□ -0.58
VCL-207ENST00000624354 ERBINQ96RT1 1412 aa11.43□□□□□ -0.58
VCL-207ENST00000624354 SAMD9LQ8IVG5 1584 aa11.42□□□□□ -0.58
VCL-207ENST00000624354 PLA2R1Q13018 1463 aa11.42□□□□□ -0.58
VCL-207ENST00000624354 PLEKHH2Q8IVE3 1493 aa11.42□□□□□ -0.58
VCL-207ENST00000624354 CRBNQ96SW2 442 aa11.42□□□□□ -0.58
VCL-207ENST00000624354 PPM1GO15355 546 aaPredicted RBP11.41□□□□□ -0.58
VCL-207ENST00000624354 SENP3Q9H4L4 574 aaPredicted RBP11.41□□□□□ -0.58
VCL-207ENST00000624354 BRPF3Q9ULD4 1205 aa11.41□□□□□ -0.58
VCL-207ENST00000624354 PRDM15P57071 1507 aaPredicted RBP11.41□□□□□ -0.58
VCL-207ENST00000624354 LAMC1P11047 1609 aa11.39□□□□□ -0.59
VCL-207ENST00000624354 DDRGK1Q96HY6 314 aa11.39□□□□□ -0.59
VCL-207ENST00000624354 PREX2Q70Z35 1606 aa11.39□□□□□ -0.59
VCL-207ENST00000624354 EIF2AK4Q9P2K8 1649 aaKnown RBP11.38□□□□□ -0.59
VCL-207ENST00000624354 SYCP2Q9BX26 1530 aa11.38□□□□□ -0.59
VCL-207ENST00000624354 PKNOX2Q96KN3 472 aa11.38□□□□□ -0.59
VCL-207ENST00000624354 ADAMTS8Q9UP79 889 aa11.38□□□□□ -0.59
VCL-207ENST00000624354 UNC13BO14795 1591 aa11.38□□□□□ -0.59
VCL-207ENST00000624354 NPM1P06748 294 aaKnown RBP eCLIP11.38□□□□□ -0.59
VCL-207ENST00000624354 WDR43Q15061 677 aaKnown RBP eCLIP11.38□□□□□ -0.59
VCL-207ENST00000624354 KNSTRNQ9Y448 316 aa11.38□□□□□ -0.59
VCL-207ENST00000624354 ARHGAP5Q13017 1502 aa11.37□□□□□ -0.59
VCL-207ENST00000624354 CDC42BPBQ9Y5S2 1711 aa11.37□□□□□ -0.59
VCL-207ENST00000624354 MAST1Q9Y2H9 1570 aa11.37□□□□□ -0.59
VCL-207ENST00000624354 GSE1Q14687 1217 aa11.36□□□□□ -0.59
VCL-207ENST00000624354 ATP10AO60312 1499 aa11.36□□□□□ -0.59
VCL-207ENST00000624354 RSPH6AQ9H0K4 717 aa11.35□□□□□ -0.59
VCL-207ENST00000624354 CDCA8Q53HL2 280 aa11.35□□□□□ -0.59
VCL-207ENST00000624354 C20orf194Q5TEA3 1177 aa11.35□□□□□ -0.59
VCL-207ENST00000624354 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.35□□□□□ -0.59
VCL-207ENST00000624354 PPP2R1AP30153 589 aa11.35□□□□□ -0.59
VCL-207ENST00000624354 CENPQQ7L2Z9 268 aaPredicted RBP11.35□□□□□ -0.59
VCL-207ENST00000624354 IQGAP3Q86VI3 1631 aa11.35□□□□□ -0.59
VCL-207ENST00000624354 SKAP1Q86WV1 359 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 166.4 ms