RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 PAK3O75914 559 aaPredicted RBP11□□□□□ -0.65
VCL-206ENST00000623461 TPM3P06753 285 aa11□□□□□ -0.65
VCL-206ENST00000623461 CCDC34Q96HJ3 373 aa11□□□□□ -0.65
VCL-206ENST00000623461 NASPP49321 788 aaPredicted RBP10.99□□□□□ -0.65
VCL-206ENST00000623461 CHMP7Q8WUX9 453 aaPredicted RBP10.99□□□□□ -0.65
VCL-206ENST00000623461 CNTLNQ9NXG0 1405 aa10.99□□□□□ -0.65
VCL-206ENST00000623461 C14orf37Q86TY3 774 aa10.99□□□□□ -0.65
VCL-206ENST00000623461 A0A0G2JS52 829 aa10.99□□□□□ -0.65
VCL-206ENST00000623461 PLIN1O60240 522 aa10.99□□□□□ -0.65
VCL-206ENST00000623461 A0A0U1RQG5 324 aaPredicted RBP10.99□□□□□ -0.65
VCL-206ENST00000623461 HMGN5P82970 282 aaKnown RBP10.99□□□□□ -0.65
VCL-206ENST00000623461 GNL2Q13823 731 aaKnown RBP10.99□□□□□ -0.65
VCL-206ENST00000623461 GOLGA6L19H0YKK7 550 aa10.98□□□□□ -0.65
VCL-206ENST00000623461 TRAK2O60296 914 aa10.98□□□□□ -0.65
VCL-206ENST00000623461 NOC3LQ8WTT2 800 aaKnown RBP10.98□□□□□ -0.65
VCL-206ENST00000623461 U2AF1L5P0DN76 240 aaPredicted RBP10.97□□□□□ -0.65
VCL-206ENST00000623461 U2AF1Q01081 240 aaKnown RBP eCLIP10.97□□□□□ -0.651e-8■□□□□ 9.3
VCL-206ENST00000623461 POGKQ9P215 609 aa10.97□□□□□ -0.65
VCL-206ENST00000623461 PLPPR3Q6T4P5 718 aa10.97□□□□□ -0.65
VCL-206ENST00000623461 FOXD1Q16676 465 aa10.97□□□□□ -0.65
VCL-206ENST00000623461 KIF3AQ9Y496 699 aa10.96□□□□□ -0.65
VCL-206ENST00000623461 KANK1Q14678 1352 aa10.96□□□□□ -0.65
VCL-206ENST00000623461 TAF3Q5VWG9 929 aa10.96□□□□□ -0.66
VCL-206ENST00000623461 ARGLU1Q9NWB6 273 aaPredicted RBP10.96□□□□□ -0.66
VCL-206ENST00000623461 CUX2O14529 1486 aa10.96□□□□□ -0.66
VCL-206ENST00000623461 CECR2Q9BXF3 1484 aa10.96□□□□□ -0.66
VCL-206ENST00000623461 ZKSCAN2Q63HK3 967 aa10.95□□□□□ -0.66
VCL-206ENST00000623461 GPATCH3Q96I76 525 aa10.95□□□□□ -0.66
VCL-206ENST00000623461 CLUAP1Q96AJ1 413 aa10.95□□□□□ -0.66
VCL-206ENST00000623461 CHMP4AQ9BY43 222 aa10.95□□□□□ -0.66
VCL-206ENST00000623461 BACH2Q9BYV9 841 aa10.95□□□□□ -0.66
VCL-206ENST00000623461 PRDM2Q13029 1718 aa10.95□□□□□ -0.66
VCL-206ENST00000623461 APBB1O00213 710 aa10.95□□□□□ -0.66
VCL-206ENST00000623461 CWC15Q9P013 229 aaKnown RBP10.95□□□□□ -0.66
VCL-206ENST00000623461 FRAT2O75474 233 aaPredicted RBP10.95□□□□□ -0.66
VCL-206ENST00000623461 ANKRD30AQ9BXX3 1397 aa10.95□□□□□ -0.66
VCL-206ENST00000623461 CHMP4CQ96CF2 233 aa10.94□□□□□ -0.66
VCL-206ENST00000623461 C22orf23Q9BZE7 217 aa10.94□□□□□ -0.66
VCL-206ENST00000623461 TRIM6-TRIM34B2RNG4 842 aa10.94□□□□□ -0.66
VCL-206ENST00000623461 CCDC7Q96M83 1385 aa10.94□□□□□ -0.66
VCL-206ENST00000623461 MSH5O43196 834 aa10.94□□□□□ -0.66
VCL-206ENST00000623461 CCDC146Q8IYE0 955 aa10.94□□□□□ -0.66
VCL-206ENST00000623461 REC8O95072 547 aa10.93□□□□□ -0.66
VCL-206ENST00000623461 BECN2A8MW95 431 aa10.93□□□□□ -0.66
VCL-206ENST00000623461 HDAC5Q9UQL6 1122 aa10.93□□□□□ -0.66
VCL-206ENST00000623461 CALRP27797 417 aaKnown RBP10.93□□□□□ -0.66
VCL-206ENST00000623461 RTF1Q92541 710 aaKnown RBP10.93□□□□□ -0.66
VCL-206ENST00000623461 ZNF592Q92610 1267 aa10.92□□□□□ -0.66
VCL-206ENST00000623461 DDX19BQ9UMR2 479 aa10.92□□□□□ -0.66
VCL-206ENST00000623461 LETM1O95202 739 aaPredicted RBP10.92□□□□□ -0.66
VCL-206ENST00000623461 CCDC18Q5T9S5 1454 aa10.92□□□□□ -0.66
VCL-206ENST00000623461 FOXD4L5Q5VV16 416 aaPredicted RBP10.92□□□□□ -0.66
VCL-206ENST00000623461 CCDC70Q6NSX1 233 aa10.92□□□□□ -0.66
VCL-206ENST00000623461 FOXD4L4Q8WXT5 416 aaPredicted RBP10.92□□□□□ -0.66
VCL-206ENST00000623461 MROH2BQ7Z745 1585 aa10.92□□□□□ -0.66
VCL-206ENST00000623461 ANKRD45Q5TZF3 282 aa10.91□□□□□ -0.66
VCL-206ENST00000623461 NPHP1O15259 732 aa10.91□□□□□ -0.66
VCL-206ENST00000623461 LMOD3Q0VAK6 560 aa10.91□□□□□ -0.66
VCL-206ENST00000623461 HDGFL2Q7Z4V5 671 aaPredicted RBP10.91□□□□□ -0.66
VCL-206ENST00000623461 NUP155O75694 1391 aa10.91□□□□□ -0.66
VCL-206ENST00000623461 USP47Q96K76 1375 aa10.91□□□□□ -0.66
VCL-206ENST00000623461 MCTP1Q6DN14 999 aa10.91□□□□□ -0.66
VCL-206ENST00000623461 COG6Q9Y2V7 657 aa10.91□□□□□ -0.66
VCL-206ENST00000623461 ACBD3Q9H3P7 528 aa10.91□□□□□ -0.66
VCL-206ENST00000623461 BRD4O60885 1362 aaPredicted RBP10.91□□□□□ -0.66
VCL-206ENST00000623461 SMG6Q86US8 1419 aaKnown RBP10.91□□□□□ -0.66
VCL-206ENST00000623461 TAOK2Q9UL54 1235 aa10.91□□□□□ -0.66
VCL-206ENST00000623461 GRPEL1Q9HAV7 217 aa10.91□□□□□ -0.66
VCL-206ENST00000623461 ESPNB1AK53 854 aa10.9□□□□□ -0.66
VCL-206ENST00000623461 MBD3O95983 291 aa10.9□□□□□ -0.66
VCL-206ENST00000623461 HSP90B1P14625 803 aaKnown RBP10.9□□□□□ -0.66
VCL-206ENST00000623461 SRPK2P78362 688 aaKnown RBP10.89□□□□□ -0.67
VCL-206ENST00000623461 NOL8Q76FK4 1167 aaKnown RBP10.89□□□□□ -0.67
VCL-206ENST00000623461 RBM10P98175 930 aaKnown RBP10.89□□□□□ -0.67
VCL-206ENST00000623461 RAPGEF2Q9Y4G8 1499 aa10.89□□□□□ -0.67
VCL-206ENST00000623461 PANK3Q9H999 370 aa10.88□□□□□ -0.67
VCL-206ENST00000623461 APPP05067 770 aa10.88□□□□□ -0.67
VCL-206ENST00000623461 PDCL3Q9H2J4 239 aa10.88□□□□□ -0.67
VCL-206ENST00000623461 STK31Q9BXU1 1019 aa10.88□□□□□ -0.67
VCL-206ENST00000623461 SF3A1Q15459 793 aaKnown RBP10.88□□□□□ -0.67
VCL-206ENST00000623461 IFT57Q9NWB7 429 aa10.87□□□□□ -0.67
VCL-206ENST00000623461 ST20-MTHFSA0A0A6YYL1 179 aa10.87□□□□□ -0.67
VCL-206ENST00000623461 TPM1P09493 284 aa10.87□□□□□ -0.67
VCL-206ENST00000623461 INTS3Q68E01 1043 aaKnown RBP10.87□□□□□ -0.67
VCL-206ENST00000623461 H3BQV1 296 aa10.87□□□□□ -0.67
VCL-206ENST00000623461 IFFO2Q5TF58 517 aa10.87□□□□□ -0.67
VCL-206ENST00000623461 CCAR2Q8N163 923 aaKnown RBP10.87□□□□□ -0.67
VCL-206ENST00000623461 UQCRHLA0A096LP55 91 aa10.86□□□□□ -0.67
VCL-206ENST00000623461 UQCRHP07919 91 aa10.86□□□□□ -0.67
VCL-206ENST00000623461 DZIP1LQ8IYY4 767 aaKnown RBP10.86□□□□□ -0.67
VCL-206ENST00000623461 EIF4G1Q04637 1599 aaKnown RBP10.86□□□□□ -0.67
VCL-206ENST00000623461 HDGFP51858 240 aaKnown RBP10.86□□□□□ -0.67
VCL-206ENST00000623461 HOMER1Q86YM7 354 aa10.86□□□□□ -0.67
VCL-206ENST00000623461 MNS1Q8NEH6 495 aa10.86□□□□□ -0.67
VCL-206ENST00000623461 WIZO95785 1651 aa10.86□□□□□ -0.67
VCL-206ENST00000623461 TSPY26PQ9H489 355 aa10.86□□□□□ -0.67
VCL-206ENST00000623461 TSR1Q2NL82 804 aaKnown RBP10.85□□□□□ -0.67
VCL-206ENST00000623461 SASS6Q6UVJ0 657 aa10.85□□□□□ -0.67
VCL-206ENST00000623461 KIF7Q2M1P5 1343 aa10.85□□□□□ -0.67
VCL-206ENST00000623461 UACAQ9BZF9 1416 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms