RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 SAMD9LQ8IVG5 1584 aa14.62□□□□□ -0.07
VPS11-208ENST00000621676 PZPP20742 1482 aa14.61□□□□□ -0.07
VPS11-208ENST00000621676 TRAK1Q9UPV9 953 aa14.61□□□□□ -0.07
VPS11-208ENST00000621676 CCDC144AA2RUR9 1427 aa14.61□□□□□ -0.07
VPS11-208ENST00000621676 TNNT2P45379 298 aaPredicted RBP14.61□□□□□ -0.07
VPS11-208ENST00000621676 CDC42BPAQ5VT25 1732 aa14.61□□□□□ -0.07
VPS11-208ENST00000621676 IRX6P78412 446 aaPredicted RBP14.61□□□□□ -0.07
VPS11-208ENST00000621676 KDM5BQ9UGL1 1544 aa14.6□□□□□ -0.07
VPS11-208ENST00000621676 ROCK2O75116 1388 aaKnown RBP14.6□□□□□ -0.07
VPS11-208ENST00000621676 KIAA1107Q9UPP5 1409 aa14.6□□□□□ -0.07
VPS11-208ENST00000621676 NUTM2FA1L443 756 aa14.59□□□□□ -0.07
VPS11-208ENST00000621676 DNMT1P26358 1616 aaKnown RBP14.59□□□□□ -0.07
VPS11-208ENST00000621676 HNRNPUQ00839 825 aaKnown RBP eCLIP14.58□□□□□ -0.07
VPS11-208ENST00000621676 TMC1Q8TDI8 760 aa14.57□□□□□ -0.08
VPS11-208ENST00000621676 MRS2Q9HD23 443 aa14.56□□□□□ -0.08
VPS11-208ENST00000621676 KIF7Q2M1P5 1343 aa14.56□□□□□ -0.08
VPS11-208ENST00000621676 CDC42BPBQ9Y5S2 1711 aa14.55□□□□□ -0.08
VPS11-208ENST00000621676 USP47Q96K76 1375 aa14.55□□□□□ -0.08
VPS11-208ENST00000621676 TIMELESSQ9UNS1 1208 aa14.54□□□□□ -0.08
VPS11-208ENST00000621676 TSPOAP1O95153 1857 aa14.54□□□□□ -0.08
VPS11-208ENST00000621676 SHROOM2Q13796 1616 aa14.53□□□□□ -0.08
VPS11-208ENST00000621676 ADGRF5Q8IZF2 1346 aa14.53□□□□□ -0.08
VPS11-208ENST00000621676 YEATS2Q9ULM3 1422 aa14.53□□□□□ -0.08
VPS11-208ENST00000621676 RBM33Q96EV2 1170 aaKnown RBP14.52□□□□□ -0.08
VPS11-208ENST00000621676 KANK1Q14678 1352 aa14.52□□□□□ -0.08
VPS11-208ENST00000621676 IDI1Q13907 227 aa14.51□□□□□ -0.09
VPS11-208ENST00000621676 ITSN2Q9NZM3 1697 aa14.49□□□□□ -0.09
VPS11-208ENST00000621676 RPRD2Q5VT52 1461 aaKnown RBP14.49□□□□□ -0.09
VPS11-208ENST00000621676 UGGT1Q9NYU2 1555 aa14.48□□□□□ -0.09
VPS11-208ENST00000621676 FAM135AQ9P2D6 1515 aa14.47□□□□□ -0.09
VPS11-208ENST00000621676 DHX29Q7Z478 1369 aaKnown RBP14.45□□□□□ -0.1
VPS11-208ENST00000621676 PANK3Q9H999 370 aa14.44□□□□□ -0.1
VPS11-208ENST00000621676 UHRF1BP1LA0JNW5 1464 aa14.44□□□□□ -0.1
VPS11-208ENST00000621676 PLA2R1Q13018 1463 aa14.44□□□□□ -0.1
VPS11-208ENST00000621676 SOX12O15370 315 aa14.43□□□□□ -0.1
VPS11-208ENST00000621676 PREX2Q70Z35 1606 aa14.43□□□□□ -0.1
VPS11-208ENST00000621676 CCDC7Q96M83 1385 aa14.43□□□□□ -0.1
VPS11-208ENST00000621676 MYO5CQ9NQX4 1742 aa14.42□□□□□ -0.1
VPS11-208ENST00000621676 MINK1Q8N4C8 1332 aaPredicted RBP14.42□□□□□ -0.1
VPS11-208ENST00000621676 RIMBP3CA6NJZ7 1639 aa14.41□□□□□ -0.1
VPS11-208ENST00000621676 RIMBP3BA6NNM3 1639 aa14.41□□□□□ -0.1
VPS11-208ENST00000621676 RIMBP3Q9UFD9 1639 aa14.41□□□□□ -0.1
VPS11-208ENST00000621676 PRKRIP1Q9H875 184 aaPredicted RBP14.41□□□□□ -0.1
VPS11-208ENST00000621676 A2MP01023 1474 aa14.41□□□□□ -0.1
VPS11-208ENST00000621676 ADGRL2O95490 1459 aa14.41□□□□□ -0.1
VPS11-208ENST00000621676 SLC26A8Q96RN1 970 aa14.4□□□□□ -0.1
VPS11-208ENST00000621676 FBLN1P23142 703 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 CABP2Q9NPB3 220 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 WAPLQ7Z5K2 1190 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 POGKQ9P215 609 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 ERBINQ96RT1 1412 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 TEX14Q8IWB6 1497 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 ABCC1P33527 1531 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 GCC2Q8IWJ2 1684 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 PPM1GO15355 546 aaPredicted RBP14.38□□□□□ -0.11
VPS11-208ENST00000621676 FKBP8Q14318 412 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 COL17A1Q9UMD9 1497 aaPredicted RBP14.38□□□□□ -0.11
VPS11-208ENST00000621676 SLC12A5Q9H2X9 1139 aa14.37□□□□□ -0.11
VPS11-208ENST00000621676 SRPK2P78362 688 aaKnown RBP14.37□□□□□ -0.11
VPS11-208ENST00000621676 ATP7AQ04656 1500 aa14.36□□□□□ -0.11
VPS11-208ENST00000621676 NEUROD2Q15784 382 aa14.36□□□□□ -0.11
VPS11-208ENST00000621676 TMF1P82094 1093 aa14.35□□□□□ -0.11
VPS11-208ENST00000621676 ZNF518AQ6AHZ1 1483 aa14.35□□□□□ -0.11
VPS11-208ENST00000621676 DISP3Q9P2K9 1392 aa14.34□□□□□ -0.11
VPS11-208ENST00000621676 SUPT16HQ9Y5B9 1047 aaKnown RBP14.34□□□□□ -0.11
VPS11-208ENST00000621676 NCKAP5LQ9HCH0 1330 aa14.34□□□□□ -0.11
VPS11-208ENST00000621676 TXNDC2Q86VQ3 553 aa14.33□□□□□ -0.11
VPS11-208ENST00000621676 DUOX2Q9NRD8 1548 aa14.33□□□□□ -0.12
VPS11-208ENST00000621676 SHANK2Q9UPX8 1470 aa14.33□□□□□ -0.12
VPS11-208ENST00000621676 NOS1P29475 1434 aa14.33□□□□□ -0.12
VPS11-208ENST00000621676 POGZQ7Z3K3 1410 aa14.32□□□□□ -0.12
VPS11-208ENST00000621676 KNSTRNQ9Y448 316 aa14.32□□□□□ -0.12
VPS11-208ENST00000621676 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.31□□□□□ -0.12
VPS11-208ENST00000621676 CCDC146Q8IYE0 955 aa14.3□□□□□ -0.12
VPS11-208ENST00000621676 NPATQ14207 1427 aa14.3□□□□□ -0.12
VPS11-208ENST00000621676 ZFYVE16Q7Z3T8 1539 aa14.3□□□□□ -0.12
VPS11-208ENST00000621676 PRAM1Q96QH2 718 aa14.3□□□□□ -0.12
VPS11-208ENST00000621676 TESK2Q96S53 571 aa14.3□□□□□ -0.12
VPS11-208ENST00000621676 ARHGEF5Q12774 1597 aa14.29□□□□□ -0.12
VPS11-208ENST00000621676 ATP10AO60312 1499 aa14.27□□□□□ -0.13
VPS11-208ENST00000621676 ADGBQ8N7X0 1667 aa14.26□□□□□ -0.13
VPS11-208ENST00000621676 PRAG1Q86YV5 1406 aa14.26□□□□□ -0.13
VPS11-208ENST00000621676 ZBTB7CA1YPR0 619 aa14.25□□□□□ -0.13
VPS11-208ENST00000621676 VGFO15240 615 aaPredicted RBP14.25□□□□□ -0.13
VPS11-208ENST00000621676 CROCC2H7BZ55 1655 aa14.24□□□□□ -0.13
VPS11-208ENST00000621676 PRDM15P57071 1507 aaPredicted RBP14.24□□□□□ -0.13
VPS11-208ENST00000621676 RTEL1-TNFRSF6BF6WH68 1400 aa14.24□□□□□ -0.13
VPS11-208ENST00000621676 ABCA9Q8IUA7 1624 aa14.23□□□□□ -0.13
VPS11-208ENST00000621676 C14orf37Q86TY3 774 aa14.23□□□□□ -0.13
VPS11-208ENST00000621676 GGNBP2Q9H3C7 697 aa14.23□□□□□ -0.13
VPS11-208ENST00000621676 NUTM2GQ5VZR2 741 aa14.23□□□□□ -0.13
VPS11-208ENST00000621676 RRP7AQ9Y3A4 280 aaKnown RBP14.23□□□□□ -0.13
VPS11-208ENST00000621676 CNTLNQ9NXG0 1405 aa14.22□□□□□ -0.13
VPS11-208ENST00000621676 CENPJQ9HC77 1338 aaPredicted RBP14.22□□□□□ -0.13
VPS11-208ENST00000621676 NEFLP07196 543 aa14.21□□□□□ -0.13
VPS11-208ENST00000621676 SPATA31E1Q6ZUB1 1445 aa14.21□□□□□ -0.14
VPS11-208ENST00000621676 BCL11AQ9H165 835 aa14.21□□□□□ -0.14
VPS11-208ENST00000621676 LMOD2Q6P5Q4 547 aa14.19□□□□□ -0.14
VPS11-208ENST00000621676 PMFBP1Q8TBY8 1022 aa14.19□□□□□ -0.14
VPS11-208ENST00000621676 ZMYM3Q14202 1370 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms