RNA–Protein interactions for RNA: ENST00000610733.1

TPM1-233, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 3,957 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-233ENST00000610733 U2AF1L5P0DN76 240 aaPredicted RBP12.33□□□□□ -0.44
TPM1-233ENST00000610733 U2AF1Q01081 240 aaKnown RBP eCLIP12.33□□□□□ -0.44
TPM1-233ENST00000610733 ARID3AQ99856 593 aa12.33□□□□□ -0.44
TPM1-233ENST00000610733 STAG3Q9UJ98 1225 aa12.33□□□□□ -0.44
TPM1-233ENST00000610733 ANKRD30BQ9BXX2 1392 aa12.33□□□□□ -0.44
TPM1-233ENST00000610733 PRDM2Q13029 1718 aa12.32□□□□□ -0.44
TPM1-233ENST00000610733 TOPBP1Q92547 1522 aa12.32□□□□□ -0.44
TPM1-233ENST00000610733 ELL2O00472 640 aaPredicted RBP12.31□□□□□ -0.44
TPM1-233ENST00000610733 GLIPR1L2Q4G1C9 344 aa12.31□□□□□ -0.44
TPM1-233ENST00000610733 ANKRD50Q9ULJ7 1429 aa12.31□□□□□ -0.44
TPM1-233ENST00000610733 NCOA1Q15788 1441 aa12.3□□□□□ -0.44
TPM1-233ENST00000610733 KIF3BO15066 747 aa12.3□□□□□ -0.44
TPM1-233ENST00000610733 CCDC144AA2RUR9 1427 aa12.3□□□□□ -0.44
TPM1-233ENST00000610733 SMG6Q86US8 1419 aaKnown RBP12.3□□□□□ -0.44
TPM1-233ENST00000610733 PTPN23Q9H3S7 1636 aa12.3□□□□□ -0.44
TPM1-233ENST00000610733 FAM161AQ3B820 660 aa12.29□□□□□ -0.44
TPM1-233ENST00000610733 ERCC6Q03468 1493 aa12.29□□□□□ -0.44
TPM1-233ENST00000610733 BIVM-ERCC5R4GMW8 1640 aa12.28□□□□□ -0.44
TPM1-233ENST00000610733 PDE3BQ13370 1112 aa12.28□□□□□ -0.44
TPM1-233ENST00000610733 ITPRIPQ8IWB1 547 aa12.28□□□□□ -0.44
TPM1-233ENST00000610733 DAPK1P53355 1430 aa12.26□□□□□ -0.45
TPM1-233ENST00000610733 CENPJQ9HC77 1338 aaPredicted RBP12.26□□□□□ -0.45
TPM1-233ENST00000610733 CDCA8Q53HL2 280 aa12.26□□□□□ -0.45
TPM1-233ENST00000610733 PEG3Q9GZU2 1588 aa12.26□□□□□ -0.45
TPM1-233ENST00000610733 CENPQQ7L2Z9 268 aaPredicted RBP12.26□□□□□ -0.45
TPM1-233ENST00000610733 SRPK2P78362 688 aaKnown RBP12.26□□□□□ -0.45
TPM1-233ENST00000610733 TMEM132EQ6IEE7 984 aa12.25□□□□□ -0.45
TPM1-233ENST00000610733 ABCC5O15440 1437 aa12.24□□□□□ -0.45
TPM1-233ENST00000610733 PPP2R1AP30153 589 aa12.24□□□□□ -0.45
TPM1-233ENST00000610733 AFAP1Q8N556 730 aa12.24□□□□□ -0.45
TPM1-233ENST00000610733 CFAP70Q5T0N1 1121 aa12.24□□□□□ -0.45
TPM1-233ENST00000610733 CFAP53Q96M91 514 aa12.24□□□□□ -0.45
TPM1-233ENST00000610733 EPRSP07814 1512 aaKnown RBP12.24□□□□□ -0.45
TPM1-233ENST00000610733 SMC4Q9NTJ3 1288 aa12.23□□□□□ -0.45
TPM1-233ENST00000610733 MAPK8IP3Q9UPT6 1336 aa12.23□□□□□ -0.45
TPM1-233ENST00000610733 BRD4O60885 1362 aaPredicted RBP12.23□□□□□ -0.45
TPM1-233ENST00000610733 TRIM44Q96DX7 344 aaPredicted RBP12.22□□□□□ -0.45
TPM1-233ENST00000610733 HSP90AB1P08238 724 aaKnown RBP12.22□□□□□ -0.45
TPM1-233ENST00000610733 FOXD4L5Q5VV16 416 aaPredicted RBP12.22□□□□□ -0.45
TPM1-233ENST00000610733 FOXD4L4Q8WXT5 416 aaPredicted RBP12.22□□□□□ -0.45
TPM1-233ENST00000610733 KIAA1107Q9UPP5 1409 aa12.22□□□□□ -0.45
TPM1-233ENST00000610733 MS4A1P11836 297 aa12.21□□□□□ -0.45
TPM1-233ENST00000610733 POGKQ9P215 609 aa12.21□□□□□ -0.46
TPM1-233ENST00000610733 NUTM2FA1L443 756 aa12.2□□□□□ -0.46
TPM1-233ENST00000610733 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.2□□□□□ -0.461e-7■■□□□ 13.6
TPM1-233ENST00000610733 TSR2Q969E8 191 aaKnown RBP12.2□□□□□ -0.46
TPM1-233ENST00000610733 PLB1Q6P1J6 1458 aa12.19□□□□□ -0.46
TPM1-233ENST00000610733 RPRD2Q5VT52 1461 aaKnown RBP12.19□□□□□ -0.46
TPM1-233ENST00000610733 FOXD4L6Q3SYB3 417 aaPredicted RBP12.19□□□□□ -0.46
TPM1-233ENST00000610733 FOXD4L3Q6VB84 417 aaPredicted RBP12.19□□□□□ -0.46
TPM1-233ENST00000610733 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.19□□□□□ -0.46
TPM1-233ENST00000610733 CARMIL2Q6F5E8 1435 aa12.19□□□□□ -0.46
TPM1-233ENST00000610733 HMGXB3Q12766 1538 aa12.19□□□□□ -0.46
TPM1-233ENST00000610733 EHBP1L1Q8N3D4 1523 aa12.19□□□□□ -0.46
TPM1-233ENST00000610733 THOC2Q8NI27 1593 aaKnown RBP12.19□□□□□ -0.46
TPM1-233ENST00000610733 SUPT6HQ7KZ85 1726 aaKnown RBP12.19□□□□□ -0.46
TPM1-233ENST00000610733 MLECQ14165 292 aa12.19□□□□□ -0.46
TPM1-233ENST00000610733 CC2D2AQ9P2K1 1620 aa12.18□□□□□ -0.46
TPM1-233ENST00000610733 EFCAB5A4FU69 1503 aa12.18□□□□□ -0.46
TPM1-233ENST00000610733 NOL8Q76FK4 1167 aaKnown RBP12.18□□□□□ -0.46
TPM1-233ENST00000610733 ANP32BQ92688 251 aaKnown RBP12.18□□□□□ -0.46
TPM1-233ENST00000610733 SLC12A5Q9H2X9 1139 aa12.18□□□□□ -0.46
TPM1-233ENST00000610733 USP35Q9P2H5 1018 aa12.18□□□□□ -0.46
TPM1-233ENST00000610733 TNNQ9UQP3 1299 aa12.18□□□□□ -0.46
TPM1-233ENST00000610733 MAP3K1Q13233 1512 aa12.17□□□□□ -0.46
TPM1-233ENST00000610733 HSCBQ8IWL3 235 aa12.17□□□□□ -0.46
TPM1-233ENST00000610733 DHX29Q7Z478 1369 aaKnown RBP12.17□□□□□ -0.46
TPM1-233ENST00000610733 ABCA10Q8WWZ4 1543 aa12.17□□□□□ -0.46
TPM1-233ENST00000610733 SPAG9O60271 1321 aaKnown RBP12.16□□□□□ -0.46
TPM1-233ENST00000610733 LNPKQ9C0E8 428 aa12.16□□□□□ -0.46
TPM1-233ENST00000610733 SPINK5Q9NQ38 1064 aaPredicted RBP12.16□□□□□ -0.46
TPM1-233ENST00000610733 DISP3Q9P2K9 1392 aa12.16□□□□□ -0.46
TPM1-233ENST00000610733 IGHDP01880 384 aa12.16□□□□□ -0.46
TPM1-233ENST00000610733 KDM6BO15054 1643 aa12.16□□□□□ -0.46
TPM1-233ENST00000610733 NPM1P06748 294 aaKnown RBP eCLIP12.15□□□□□ -0.46
TPM1-233ENST00000610733 TCP11L2Q8N4U5 519 aa12.15□□□□□ -0.46
TPM1-233ENST00000610733 EFCAB2Q5VUJ9 269 aa12.15□□□□□ -0.46
TPM1-233ENST00000610733 GGNBP2Q9H3C7 697 aa12.15□□□□□ -0.46
TPM1-233ENST00000610733 RWDD1Q9H446 243 aaPredicted RBP12.15□□□□□ -0.46
TPM1-233ENST00000610733 MTHFSP49914 203 aa12.14□□□□□ -0.47
TPM1-233ENST00000610733 PLCB2Q00722 1185 aa12.14□□□□□ -0.47
TPM1-233ENST00000610733 URB2Q14146 1524 aaKnown RBP12.14□□□□□ -0.47
TPM1-233ENST00000610733 C9orf84Q5VXU9 1444 aa12.14□□□□□ -0.47
TPM1-233ENST00000610733 E9PSI1 815 aa12.14□□□□□ -0.47
TPM1-233ENST00000610733 SEC24BO95487 1268 aa12.14□□□□□ -0.47
TPM1-233ENST00000610733 MYH16Q9H6N6 1097 aa12.14□□□□□ -0.47
TPM1-233ENST00000610733 C1orf115Q9H7X2 142 aa12.14□□□□□ -0.47
TPM1-233ENST00000610733 ARHGEF11O15085 1522 aa12.13□□□□□ -0.47
TPM1-233ENST00000610733 SNAPC4Q5SXM2 1469 aa12.13□□□□□ -0.47
TPM1-233ENST00000610733 MIA2Q96PC5 1412 aa12.13□□□□□ -0.47
TPM1-233ENST00000610733 GOLGA6L3A6NEY3 463 aa12.13□□□□□ -0.47
TPM1-233ENST00000610733 DUSP27Q5VZP5 1158 aa12.13□□□□□ -0.47
TPM1-233ENST00000610733 PNNQ9H307 717 aaKnown RBP12.13□□□□□ -0.47
TPM1-233ENST00000610733 PTPRGP23470 1445 aa12.13□□□□□ -0.47
TPM1-233ENST00000610733 PDZRN3Q9UPQ7 1066 aa12.12□□□□□ -0.47
TPM1-233ENST00000610733 CABP2Q9NPB3 220 aa12.12□□□□□ -0.47
TPM1-233ENST00000610733 DMRT2Q9Y5R5 561 aa12.12□□□□□ -0.47
TPM1-233ENST00000610733 TAOK2Q9UL54 1235 aa12.12□□□□□ -0.47
TPM1-233ENST00000610733 MINK1Q8N4C8 1332 aaPredicted RBP12.12□□□□□ -0.47
TPM1-233ENST00000610733 ZNF608Q9ULD9 1512 aaPredicted RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms