RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, humanhuman

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-215ENST00000602574 EFCC1Q9HA90 598 aa11.26□□□□□ -0.61
COMMD3-215ENST00000602574 MAFGO15525 162 aa11.26□□□□□ -0.61
COMMD3-215ENST00000602574 CFAP65Q6ZU64 1925 aaKnown RBP11.26□□□□□ -0.61
COMMD3-215ENST00000602574 RRBP1Q9P2E9 1410 aaKnown RBP11.25□□□□□ -0.61
COMMD3-215ENST00000602574 TTC36A6NLP5 189 aa11.25□□□□□ -0.61
COMMD3-215ENST00000602574 NGEFQ8N5V2 710 aa11.25□□□□□ -0.61
COMMD3-215ENST00000602574 FAM13BQ9NYF5 915 aa11.24□□□□□ -0.61
COMMD3-215ENST00000602574 ERBB4Q15303 1308 aa11.23□□□□□ -0.61
COMMD3-215ENST00000602574 E9PSI1 815 aa11.23□□□□□ -0.61
COMMD3-215ENST00000602574 GPATCH11Q8N954 259 aa11.22□□□□□ -0.61
COMMD3-215ENST00000602574 RAI14Q9P0K7 980 aa11.22□□□□□ -0.61
COMMD3-215ENST00000602574 ANAPC15P60006 121 aa11.21□□□□□ -0.61
COMMD3-215ENST00000602574 HNRNPUQ00839 825 aaKnown RBP eCLIP11.21□□□□□ -0.62
COMMD3-215ENST00000602574 CFAP44Q96MT7 982 aa11.21□□□□□ -0.62
COMMD3-215ENST00000602574 MYH16Q9H6N6 1097 aa11.21□□□□□ -0.62
COMMD3-215ENST00000602574 PRDM16Q9HAZ2 1276 aa11.21□□□□□ -0.62
COMMD3-215ENST00000602574 POGKQ9P215 609 aa11.21□□□□□ -0.62
COMMD3-215ENST00000602574 TULP2O00295 520 aa11.2□□□□□ -0.62
COMMD3-215ENST00000602574 SATB1Q01826 763 aa11.2□□□□□ -0.62
COMMD3-215ENST00000602574 NBPF9Q3BBW0 867 aa11.2□□□□□ -0.62
COMMD3-215ENST00000602574 CGNQ9P2M7 1197 aaKnown RBP11.2□□□□□ -0.62
COMMD3-215ENST00000602574 SH3BP1Q9Y3L3 701 aa11.2□□□□□ -0.62
COMMD3-215ENST00000602574 SYNJ1O43426 1573 aa11.2□□□□□ -0.62
COMMD3-215ENST00000602574 CCDC66A2RUB6 948 aa11.2□□□□□ -0.62
COMMD3-215ENST00000602574 NINLQ9Y2I6 1382 aa11.19□□□□□ -0.62
COMMD3-215ENST00000602574 SMG6Q86US8 1419 aaKnown RBP11.19□□□□□ -0.62
COMMD3-215ENST00000602574 MAP3K1Q13233 1512 aa11.19□□□□□ -0.62
COMMD3-215ENST00000602574 OS9Q13438 667 aaPredicted RBP11.19□□□□□ -0.62
COMMD3-215ENST00000602574 CERS3Q8IU89 383 aa11.19□□□□□ -0.62
COMMD3-215ENST00000602574 LMOD3Q0VAK6 560 aa11.18□□□□□ -0.62
COMMD3-215ENST00000602574 HNRNPUL2Q1KMD3 747 aaKnown RBP11.18□□□□□ -0.62
COMMD3-215ENST00000602574 BSDC1Q9NW68 430 aaPredicted RBP11.18□□□□□ -0.62
COMMD3-215ENST00000602574 PLCB2Q00722 1185 aa11.17□□□□□ -0.62
COMMD3-215ENST00000602574 BANK1Q8NDB2 785 aa11.17□□□□□ -0.62
COMMD3-215ENST00000602574 RUSC2Q8N2Y8 1516 aa11.17□□□□□ -0.62
COMMD3-215ENST00000602574 ZSCAN30Q86W11 494 aa11.16□□□□□ -0.62
COMMD3-215ENST00000602574 POTEDQ86YR6 584 aa11.16□□□□□ -0.62
COMMD3-215ENST00000602574 UQCRHLA0A096LP55 91 aa11.15□□□□□ -0.62
COMMD3-215ENST00000602574 UQCRHP07919 91 aa11.15□□□□□ -0.62
COMMD3-215ENST00000602574 TMC1Q8TDI8 760 aa11.15□□□□□ -0.62
COMMD3-215ENST00000602574 ZBTB22O15209 634 aa11.15□□□□□ -0.62
COMMD3-215ENST00000602574 HS1BP3Q53T59 392 aa11.15□□□□□ -0.62
COMMD3-215ENST00000602574 AEBP1Q8IUX7 1158 aa11.15□□□□□ -0.62
COMMD3-215ENST00000602574 MYCBPQ99417 103 aaPredicted RBP11.15□□□□□ -0.62
COMMD3-215ENST00000602574 KIF3AQ9Y496 699 aa11.15□□□□□ -0.62
COMMD3-215ENST00000602574 CEP83Q9Y592 693 aa11.15□□□□□ -0.62
COMMD3-215ENST00000602574 BIVM-ERCC5R4GMW8 1640 aa11.15□□□□□ -0.62
COMMD3-215ENST00000602574 PRDM2Q13029 1718 aa11.14□□□□□ -0.63
COMMD3-215ENST00000602574 MAP2K1Q02750 393 aaPredicted RBP11.14□□□□□ -0.63
COMMD3-215ENST00000602574 DDX10Q13206 875 aaKnown RBP11.14□□□□□ -0.63
COMMD3-215ENST00000602574 NBPF10Q6P3W6 841 aaKnown RBP11.14□□□□□ -0.63
COMMD3-215ENST00000602574 CTR9Q6PD62 1173 aa11.14□□□□□ -0.63
COMMD3-215ENST00000602574 TIGD1Q96MW7 591 aa11.14□□□□□ -0.63
COMMD3-215ENST00000602574 RBM28Q9NW13 759 aaKnown RBP11.14□□□□□ -0.63
COMMD3-215ENST00000602574 CSPP1Q1MSJ5 1256 aa11.14□□□□□ -0.63
COMMD3-215ENST00000602574 BRPF1P55201 1214 aaPredicted RBP11.13□□□□□ -0.63
COMMD3-215ENST00000602574 GABPB1Q06547 395 aaPredicted RBP11.13□□□□□ -0.63
COMMD3-215ENST00000602574 PANK2Q9BZ23 570 aa11.13□□□□□ -0.63
COMMD3-215ENST00000602574 KCNJ4P48050 445 aa11.12□□□□□ -0.63
COMMD3-215ENST00000602574 MFAP1P55081 439 aaKnown RBP11.12□□□□□ -0.63
COMMD3-215ENST00000602574 TOP2BQ02880 1626 aa11.12□□□□□ -0.63
COMMD3-215ENST00000602574 IRF6O14896 467 aa11.12□□□□□ -0.63
COMMD3-215ENST00000602574 ZNF500O60304 480 aaPredicted RBP11.12□□□□□ -0.63
COMMD3-215ENST00000602574 SEMA3FQ13275 785 aa11.12□□□□□ -0.63
COMMD3-215ENST00000602574 OTUD6BQ8N6M0 293 aa11.12□□□□□ -0.63
COMMD3-215ENST00000602574 NCAPGQ9BPX3 1015 aa11.12□□□□□ -0.63
COMMD3-215ENST00000602574 SASS6Q6UVJ0 657 aa11.11□□□□□ -0.63
COMMD3-215ENST00000602574 P3H3Q8IVL6 736 aa11.11□□□□□ -0.63
COMMD3-215ENST00000602574 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.11□□□□□ -0.63
COMMD3-215ENST00000602574 GRPEL1Q9HAV7 217 aa11.11□□□□□ -0.63
COMMD3-215ENST00000602574 VIRMAQ69YN4 1812 aaKnown RBP11.1□□□□□ -0.63
COMMD3-215ENST00000602574 CASC1Q6TDU7 716 aa11.1□□□□□ -0.63
COMMD3-215ENST00000602574 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.1□□□□□ -0.63
COMMD3-215ENST00000602574 PPP1R9BQ96SB3 815 aa11.1□□□□□ -0.63
COMMD3-215ENST00000602574 CCDC172P0C7W6 258 aa11.1□□□□□ -0.63
COMMD3-215ENST00000602574 SSR1P43307 286 aaKnown RBP11.1□□□□□ -0.63
COMMD3-215ENST00000602574 CCDC173Q0VFZ6 552 aa11.1□□□□□ -0.63
COMMD3-215ENST00000602574 ZKSCAN8Q15776 578 aaPredicted RBP11.1□□□□□ -0.63
COMMD3-215ENST00000602574 CREBRFQ8IUR6 639 aa11.1□□□□□ -0.63
COMMD3-215ENST00000602574 BRMS1Q9HCU9 246 aa11.1□□□□□ -0.63
COMMD3-215ENST00000602574 TERF2IPQ9NYB0 399 aa11.1□□□□□ -0.63
COMMD3-215ENST00000602574 CALCOCO1Q9P1Z2 691 aa11.1□□□□□ -0.63
COMMD3-215ENST00000602574 RAD50Q92878 1312 aa11.09□□□□□ -0.63
COMMD3-215ENST00000602574 NBPF6Q5VWK0 638 aa11.09□□□□□ -0.63
COMMD3-215ENST00000602574 NBPF5PQ86XG9 351 aaPredicted RBP11.09□□□□□ -0.63
COMMD3-215ENST00000602574 NBPF4Q96M43 638 aa11.09□□□□□ -0.63
COMMD3-215ENST00000602574 KIF16BQ96L93 1317 aa11.08□□□□□ -0.64
COMMD3-215ENST00000602574 GOLIM4O00461 696 aa11.08□□□□□ -0.64
COMMD3-215ENST00000602574 KIF1CO43896 1103 aaKnown RBP11.08□□□□□ -0.64
COMMD3-215ENST00000602574 BECN1Q14457 450 aa11.08□□□□□ -0.64
COMMD3-215ENST00000602574 SMC4Q9NTJ3 1288 aa11.08□□□□□ -0.64
COMMD3-215ENST00000602574 ARAP1Q96P48 1450 aa11.08□□□□□ -0.64
COMMD3-215ENST00000602574 UNC13AQ9UPW8 1703 aa11.08□□□□□ -0.64
COMMD3-215ENST00000602574 TRIM6-TRIM34B2RNG4 842 aa11.07□□□□□ -0.64
COMMD3-215ENST00000602574 MSNP26038 577 aaKnown RBP11.07□□□□□ -0.64
COMMD3-215ENST00000602574 TRIM34Q9BYJ4 488 aa11.07□□□□□ -0.64
COMMD3-215ENST00000602574 PRXQ9BXM0 1461 aa11.07□□□□□ -0.64
COMMD3-215ENST00000602574 RAPGEF2Q9Y4G8 1499 aa11.07□□□□□ -0.64
COMMD3-215ENST00000602574 PRR29P0C7W0 189 aa11.07□□□□□ -0.64
COMMD3-215ENST00000602574 MCM5P33992 734 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 129.3 ms