RNA–Protein interactions for RNA: ENST00000602492.5

PPFIA3-204, Transcript of PTPRF interacting protein alpha 3, human

TSL 4

Gene PPFIA3, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPFIA3-204	ENST00000602492	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	32.12	■■■□□ 2.73
PPFIA3-204	ENST00000602492	KDM5D	Q9BY66	1539 aa		32.11	■■■□□ 2.73
PPFIA3-204	ENST00000602492	TSPY4	P0CV99	314 aa		32.11	■■■□□ 2.73
PPFIA3-204	ENST00000602492	TSPY10	P0CW01	314 aa		32.11	■■■□□ 2.73
PPFIA3-204	ENST00000602492	LRRC9	Q6ZRR7	1453 aa		32.1	■■■□□ 2.73
PPFIA3-204	ENST00000602492	TNR	Q92752	1358 aa		32.09	■■■□□ 2.73
PPFIA3-204	ENST00000602492	WASHC2C	Q9Y4E1	1318 aa		32.08	■■■□□ 2.73
PPFIA3-204	ENST00000602492	PZP	P20742	1482 aa		32.08	■■■□□ 2.73
PPFIA3-204	ENST00000602492	DNMT1	P26358	1616 aa	Known RBP	32.08	■■■□□ 2.73
PPFIA3-204	ENST00000602492	LOC105371045	A0A1W2PR82	267 aa		32.07	■■■□□ 2.72
PPFIA3-204	ENST00000602492	FBXO31	Q5XUX0	539 aa	Predicted RBP	32.07	■■■□□ 2.72
PPFIA3-204	ENST00000602492	DISP3	Q9P2K9	1392 aa		32.06	■■■□□ 2.72
PPFIA3-204	ENST00000602492	MAP3K1	Q13233	1512 aa		31.98	■■■□□ 2.71
PPFIA3-204	ENST00000602492	UBAP1L	F5GYI3	381 aa		31.97	■■■□□ 2.71
PPFIA3-204	ENST00000602492	KANK4	Q5T7N3	995 aa	Predicted RBP	31.97	■■■□□ 2.71
PPFIA3-204	ENST00000602492	MAST1	Q9Y2H9	1570 aa		31.97	■■■□□ 2.71
PPFIA3-204	ENST00000602492	MIA2	Q96PC5	1412 aa		31.96	■■■□□ 2.71
PPFIA3-204	ENST00000602492	POLR1A	O95602	1720 aa	Predicted RBP	31.94	■■■□□ 2.7
PPFIA3-204	ENST00000602492	MYOM3	Q5VTT5	1437 aa		31.93	■■■□□ 2.7
PPFIA3-204	ENST00000602492	NLRP1	Q9C000	1473 aa		31.93	■■■□□ 2.7
PPFIA3-204	ENST00000602492	RNF17	Q9BXT8	1623 aa	Known RBP	31.93	■■■□□ 2.7
PPFIA3-204	ENST00000602492	NEURL4	Q96JN8	1562 aa		31.91	■■■□□ 2.7
PPFIA3-204	ENST00000602492	THEMIS	Q8N1K5	641 aa	Predicted RBP	31.91	■■■□□ 2.7
PPFIA3-204	ENST00000602492	ANKLE2	Q86XL3	938 aa		31.9	■■■□□ 2.7
PPFIA3-204	ENST00000602492	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	31.9	■■■□□ 2.7
PPFIA3-204	ENST00000602492	SPATA31D1	Q6ZQQ2	1576 aa		31.9	■■■□□ 2.7
PPFIA3-204	ENST00000602492	ABCC3	O15438	1527 aa		31.89	■■■□□ 2.7
PPFIA3-204	ENST00000602492	UGGT1	Q9NYU2	1555 aa		31.88	■■■□□ 2.69
PPFIA3-204	ENST00000602492	EIF2AK4	Q9P2K8	1649 aa	Known RBP	31.87	■■■□□ 2.69
PPFIA3-204	ENST00000602492	ZC3H13	Q5T200	1668 aa	Known RBP	31.86	■■■□□ 2.69
PPFIA3-204	ENST00000602492	ILDR2	Q71H61	639 aa		31.86	■■■□□ 2.69
PPFIA3-204	ENST00000602492	CPS1	P31327	1500 aa		31.83	■■■□□ 2.69
PPFIA3-204	ENST00000602492	SHANK2	Q9UPX8	1470 aa		31.82	■■■□□ 2.68
PPFIA3-204	ENST00000602492	DUOX2	Q9NRD8	1548 aa		31.8	■■■□□ 2.68
PPFIA3-204	ENST00000602492	MROH1	Q8NDA8	1641 aa		31.79	■■■□□ 2.68
PPFIA3-204	ENST00000602492	NPHP4	O75161	1426 aa	Predicted RBP	31.79	■■■□□ 2.68
PPFIA3-204	ENST00000602492	DEPDC5	O75140	1603 aa		31.78	■■■□□ 2.68
PPFIA3-204	ENST00000602492	MED14	O60244	1454 aa		31.78	■■■□□ 2.68
PPFIA3-204	ENST00000602492	ERVK-7	P63135	1459 aa		31.78	■■■□□ 2.68
PPFIA3-204	ENST00000602492	APLP2	Q06481	763 aa		31.77	■■■□□ 2.68
PPFIA3-204	ENST00000602492	VWDE	Q8N2E2	1590 aa		31.74	■■■□□ 2.67
PPFIA3-204	ENST00000602492	KIF15	Q9NS87	1388 aa		31.74	■■■□□ 2.67
PPFIA3-204	ENST00000602492	CEP152	O94986	1710 aa		31.73	■■■□□ 2.67
PPFIA3-204	ENST00000602492	SOCS7	O14512	581 aa		31.72	■■■□□ 2.67
PPFIA3-204	ENST00000602492	TOM1	O60784	492 aa		31.72	■■■□□ 2.67
PPFIA3-204	ENST00000602492	SCAF1	Q9H7N4	1312 aa	Known RBP	31.72	■■■□□ 2.67
PPFIA3-204	ENST00000602492	ABCC5	O15440	1437 aa		31.71	■■■□□ 2.67
PPFIA3-204	ENST00000602492	PTPN23	Q9H3S7	1636 aa		31.7	■■■□□ 2.66
PPFIA3-204	ENST00000602492	IQGAP1	P46940	1657 aa		31.7	■■■□□ 2.66
PPFIA3-204	ENST00000602492	ERBIN	Q96RT1	1412 aa		31.69	■■■□□ 2.66
PPFIA3-204	ENST00000602492	CROCC2	H7BZ55	1655 aa		31.69	■■■□□ 2.66
PPFIA3-204	ENST00000602492	PIP4K2B	P78356	416 aa		31.68	■■■□□ 2.66
PPFIA3-204	ENST00000602492	RRP7BP	Q9NSQ0	103 aa		31.68	■■■□□ 2.66
PPFIA3-204	ENST00000602492	CFAP65	Q6ZU64	1925 aa	Known RBP	31.67	■■■□□ 2.66
PPFIA3-204	ENST00000602492	PRDM15	P57071	1507 aa	Predicted RBP	31.66	■■■□□ 2.66
PPFIA3-204	ENST00000602492	DAPK1	P53355	1430 aa		31.65	■■■□□ 2.66
PPFIA3-204	ENST00000602492	ARHGAP31	Q2M1Z3	1444 aa		31.64	■■■□□ 2.66
PPFIA3-204	ENST00000602492	FGD6	Q6ZV73	1430 aa		31.63	■■■□□ 2.65
PPFIA3-204	ENST00000602492	HSPA1L	P34931	641 aa		31.62	■■■□□ 2.65
PPFIA3-204	ENST00000602492	UBR1	Q8IWV7	1749 aa		31.62	■■■□□ 2.65
PPFIA3-204	ENST00000602492	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	31.61	■■■□□ 2.65
PPFIA3-204	ENST00000602492	SCAF11	Q99590	1463 aa	Known RBP	31.59	■■■□□ 2.65
PPFIA3-204	ENST00000602492	KANK1	Q14678	1352 aa		31.58	■■■□□ 2.65
PPFIA3-204	ENST00000602492	ANKRD30A	Q9BXX3	1397 aa		31.56	■■■□□ 2.64
PPFIA3-204	ENST00000602492	ARHGAP23	Q9P227	1491 aa		31.54	■■■□□ 2.64
PPFIA3-204	ENST00000602492	CHIC2	Q9UKJ5	165 aa		31.54	■■■□□ 2.64
PPFIA3-204	ENST00000602492	SLIT1	O75093	1534 aa		31.54	■■■□□ 2.64
PPFIA3-204	ENST00000602492	TXNDC2	Q86VQ3	553 aa		31.53	■■■□□ 2.64
PPFIA3-204	ENST00000602492	LRRC7	Q96NW7	1537 aa		31.53	■■■□□ 2.64
PPFIA3-204	ENST00000602492	STRCP1	A6NGW2	1772 aa		31.53	■■■□□ 2.64
PPFIA3-204	ENST00000602492	LTK	P29376	864 aa		31.52	■■■□□ 2.64
PPFIA3-204	ENST00000602492	SYNM	O15061	1565 aa		31.51	■■■□□ 2.64
PPFIA3-204	ENST00000602492	EID1	Q9Y6B2	187 aa		31.5	■■■□□ 2.63
PPFIA3-204	ENST00000602492	ALK	Q9UM73	1620 aa		31.49	■■■□□ 2.63
PPFIA3-204	ENST00000602492	PIK3C2B	O00750	1634 aa		31.47	■■■□□ 2.63
PPFIA3-204	ENST00000602492	STAG3	Q9UJ98	1225 aa		31.47	■■■□□ 2.63
PPFIA3-204	ENST00000602492	LMTK2	Q8IWU2	1503 aa		31.47	■■■□□ 2.63
PPFIA3-204	ENST00000602492	MED1	Q15648	1581 aa	Predicted RBP	31.45	■■■□□ 2.63
PPFIA3-204	ENST00000602492	TMEM2	Q9UHN6	1383 aa		31.44	■■■□□ 2.62
PPFIA3-204	ENST00000602492	ADGRL2	O95490	1459 aa		31.4	■■■□□ 2.62
PPFIA3-204	ENST00000602492	EFCAB6	Q5THR3	1501 aa		31.39	■■■□□ 2.62
PPFIA3-204	ENST00000602492	IDI1	Q13907	227 aa		31.39	■■■□□ 2.62
PPFIA3-204	ENST00000602492	KDM5A	P29375	1690 aa	Known RBP	31.38	■■■□□ 2.61
PPFIA3-204	ENST00000602492	FAM50A	Q14320	339 aa	Known RBP	31.38	■■■□□ 2.61
PPFIA3-204	ENST00000602492	NOS1	P29475	1434 aa		31.35	■■■□□ 2.61
PPFIA3-204	ENST00000602492	SENP3	Q9H4L4	574 aa	Predicted RBP	31.33	■■■□□ 2.61
PPFIA3-204	ENST00000602492	ANKRD50	Q9ULJ7	1429 aa		31.32	■■■□□ 2.6
PPFIA3-204	ENST00000602492	SLC52A1	Q9NWF4	448 aa		31.3	■■■□□ 2.6
PPFIA3-204	ENST00000602492	ADGRB3	O60242	1522 aa		31.29	■■■□□ 2.6
PPFIA3-204	ENST00000602492	PHF23	Q9BUL5	403 aa	Predicted RBP	31.28	■■■□□ 2.6
PPFIA3-204	ENST00000602492	RPRD2	Q5VT52	1461 aa	Known RBP	31.27	■■■□□ 2.6
PPFIA3-204	ENST00000602492	XIRP1	Q702N8	1843 aa	Known RBP	31.26	■■■□□ 2.6
PPFIA3-204	ENST00000602492	KCNA6	P17658	529 aa		31.25	■■■□□ 2.59
PPFIA3-204	ENST00000602492	SLC26A8	Q96RN1	970 aa		31.24	■■■□□ 2.59
PPFIA3-204	ENST00000602492	TET3	O43151	1660 aa		31.23	■■■□□ 2.59
PPFIA3-204	ENST00000602492	TMEM94	Q12767	1356 aa		31.22	■■■□□ 2.59
PPFIA3-204	ENST00000602492	PROSER2	Q86WR7	435 aa	Predicted RBP	31.18	■■■□□ 2.58
PPFIA3-204	ENST00000602492	BCAN	Q96GW7	911 aa		31.18	■■■□□ 2.58
PPFIA3-204	ENST00000602492	FAM135B	Q49AJ0	1406 aa		31.15	■■■□□ 2.58
PPFIA3-204	ENST00000602492	NKTR	P30414	1462 aa	Known RBP	31.14	■■■□□ 2.57

Retrieved 100 of 20,778 RNA–protein pairs in 48 ms