RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 SHANK2Q9UPX8 1470 aa25.17■■□□□ 1.62
LSM4-206ENST00000600289 MROH2AA6NES4 1674 aa25.15■■□□□ 1.62
LSM4-206ENST00000600289 ZNF142P52746 1687 aaPredicted RBP25.15■■□□□ 1.62
LSM4-206ENST00000600289 TSPY4P0CV99 314 aa25.11■■□□□ 1.61
LSM4-206ENST00000600289 TSPY10P0CW01 314 aa25.11■■□□□ 1.61
LSM4-206ENST00000600289 EIF2AK4Q9P2K8 1649 aaKnown RBP25.11■■□□□ 1.61
LSM4-206ENST00000600289 DHX29Q7Z478 1369 aaKnown RBP25.1■■□□□ 1.61
LSM4-206ENST00000600289 MYO3AQ8NEV4 1616 aa25.09■■□□□ 1.61
LSM4-206ENST00000600289 ABCC5O15440 1437 aa25.09■■□□□ 1.61
LSM4-206ENST00000600289 DAPK1P53355 1430 aa25.09■■□□□ 1.61
LSM4-206ENST00000600289 NCKAP5LQ9HCH0 1330 aa25.08■■□□□ 1.6
LSM4-206ENST00000600289 FAM135AQ9P2D6 1515 aa25.07■■□□□ 1.6
LSM4-206ENST00000600289 NPATQ14207 1427 aa25.07■■□□□ 1.6
LSM4-206ENST00000600289 CNTLNQ9NXG0 1405 aa25.07■■□□□ 1.6
LSM4-206ENST00000600289 HSPA1LP34931 641 aa25.07■■□□□ 1.6
LSM4-206ENST00000600289 RNF17Q9BXT8 1623 aaKnown RBP25.05■■□□□ 1.6
LSM4-206ENST00000600289 CLTCQ00610 1675 aaKnown RBP25.05■■□□□ 1.6
LSM4-206ENST00000600289 PLA2R1Q13018 1463 aa25.05■■□□□ 1.6
LSM4-206ENST00000600289 DUOX2Q9NRD8 1548 aa25.03■■□□□ 1.6
LSM4-206ENST00000600289 CEP170BQ9Y4F5 1589 aaPredicted RBP25.01■■□□□ 1.59
LSM4-206ENST00000600289 ESF1Q9H501 851 aaKnown RBP25■■□□□ 1.59
LSM4-206ENST00000600289 ADGRL2O95490 1459 aa24.99■■□□□ 1.59
LSM4-206ENST00000600289 PPP6R1Q9UPN7 881 aa24.99■■□□□ 1.59
LSM4-206ENST00000600289 ZC3H13Q5T200 1668 aaKnown RBP24.97■■□□□ 1.59
LSM4-206ENST00000600289 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.97■■□□□ 1.591e-6■■■■■ 37.1
LSM4-206ENST00000600289 ERBINQ96RT1 1412 aa24.95■■□□□ 1.59
LSM4-206ENST00000600289 ALKQ9UM73 1620 aa24.95■■□□□ 1.58
LSM4-206ENST00000600289 KDM5DQ9BY66 1539 aa24.95■■□□□ 1.58
LSM4-206ENST00000600289 DEPDC5O75140 1603 aa24.94■■□□□ 1.58
LSM4-206ENST00000600289 MROH1Q8NDA8 1641 aa24.94■■□□□ 1.58
LSM4-206ENST00000600289 PKD2Q13563 968 aa24.94■■□□□ 1.58
LSM4-206ENST00000600289 POLR1AO95602 1720 aaPredicted RBP24.94■■□□□ 1.58
LSM4-206ENST00000600289 KIF15Q9NS87 1388 aa24.93■■□□□ 1.58
LSM4-206ENST00000600289 SCAF1Q9H7N4 1312 aaKnown RBP24.92■■□□□ 1.58
LSM4-206ENST00000600289 PIP4K2BP78356 416 aa24.92■■□□□ 1.58
LSM4-206ENST00000600289 ZMYM3Q14202 1370 aa24.92■■□□□ 1.58
LSM4-206ENST00000600289 ANKRD30AQ9BXX3 1397 aa24.92■■□□□ 1.58
LSM4-206ENST00000600289 KIF3BO15066 747 aa24.9■■□□□ 1.58
LSM4-206ENST00000600289 GGT6Q6P531 493 aa24.9■■□□□ 1.58
LSM4-206ENST00000600289 PHF23Q9BUL5 403 aaPredicted RBP24.9■■□□□ 1.58
LSM4-206ENST00000600289 CPS1P31327 1500 aa24.9■■□□□ 1.58
LSM4-206ENST00000600289 PRDM15P57071 1507 aaPredicted RBP24.9■■□□□ 1.58
LSM4-206ENST00000600289 RRBP1Q9P2E9 1410 aaKnown RBP24.89■■□□□ 1.58
LSM4-206ENST00000600289 FAM50AQ14320 339 aaKnown RBP24.89■■□□□ 1.58
LSM4-206ENST00000600289 NEURL4Q96JN8 1562 aa24.88■■□□□ 1.57
LSM4-206ENST00000600289 PTPRKQ15262 1439 aa24.86■■□□□ 1.57
LSM4-206ENST00000600289 CEP152O94986 1710 aa24.86■■□□□ 1.57
LSM4-206ENST00000600289 PPARGC1BQ86YN6 1023 aaKnown RBP24.85■■□□□ 1.57
LSM4-206ENST00000600289 ABCC3O15438 1527 aa24.85■■□□□ 1.57
LSM4-206ENST00000600289 TOM1O60784 492 aa24.84■■□□□ 1.57
LSM4-206ENST00000600289 ROCK1Q13464 1354 aa24.82■■□□□ 1.56
LSM4-206ENST00000600289 PZPP20742 1482 aa24.82■■□□□ 1.56
LSM4-206ENST00000600289 RRP7BPQ9NSQ0 103 aa24.81■■□□□ 1.56
LSM4-206ENST00000600289 CHIC2Q9UKJ5 165 aa24.8■■□□□ 1.56
LSM4-206ENST00000600289 VWDEQ8N2E2 1590 aa24.8■■□□□ 1.56
LSM4-206ENST00000600289 WASHC2CQ9Y4E1 1318 aa24.77■■□□□ 1.56
LSM4-206ENST00000600289 A2ML1A8K2U0 1454 aa24.77■■□□□ 1.56
LSM4-206ENST00000600289 UNC13BO14795 1591 aa24.76■■□□□ 1.55
LSM4-206ENST00000600289 ANKRD50Q9ULJ7 1429 aa24.75■■□□□ 1.55
LSM4-206ENST00000600289 LMTK2Q8IWU2 1503 aa24.75■■□□□ 1.55
LSM4-206ENST00000600289 RGS17Q9UGC6 210 aaPredicted RBP24.73■■□□□ 1.55
LSM4-206ENST00000600289 STRCP1A6NGW2 1772 aa24.72■■□□□ 1.55
LSM4-206ENST00000600289 GCC2Q8IWJ2 1684 aa24.72■■□□□ 1.55
LSM4-206ENST00000600289 ARHGAP31Q2M1Z3 1444 aa24.7■■□□□ 1.55
LSM4-206ENST00000600289 KANK1Q14678 1352 aa24.67■■□□□ 1.54
LSM4-206ENST00000600289 EFCAB6Q5THR3 1501 aa24.66■■□□□ 1.54
LSM4-206ENST00000600289 TET3O43151 1660 aa24.66■■□□□ 1.54
LSM4-206ENST00000600289 ERVK-7P63135 1459 aa24.65■■□□□ 1.54
LSM4-206ENST00000600289 TNRQ92752 1358 aa24.65■■□□□ 1.54
LSM4-206ENST00000600289 IQGAP3Q86VI3 1631 aa24.64■■□□□ 1.54
LSM4-206ENST00000600289 NLRP1Q9C000 1473 aa24.64■■□□□ 1.53
LSM4-206ENST00000600289 CFAP65Q6ZU64 1925 aaKnown RBP24.63■■□□□ 1.53
LSM4-206ENST00000600289 SETD1AO15047 1707 aaKnown RBP24.62■■□□□ 1.53
LSM4-206ENST00000600289 SYNMO15061 1565 aa24.62■■□□□ 1.53
LSM4-206ENST00000600289 IQGAP1P46940 1657 aa24.6■■□□□ 1.53
LSM4-206ENST00000600289 ITGAEP38570 1179 aa24.6■■□□□ 1.53
LSM4-206ENST00000600289 FBXO31Q5XUX0 539 aaPredicted RBP24.59■■□□□ 1.53
LSM4-206ENST00000600289 SENP3Q9H4L4 574 aaPredicted RBP24.59■■□□□ 1.53
LSM4-206ENST00000600289 MED14O60244 1454 aa24.58■■□□□ 1.53
LSM4-206ENST00000600289 LRRC7Q96NW7 1537 aa24.58■■□□□ 1.53
LSM4-206ENST00000600289 RPRD2Q5VT52 1461 aaKnown RBP24.58■■□□□ 1.52
LSM4-206ENST00000600289 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.57■■□□□ 1.522e-7■□□□□ 8
LSM4-206ENST00000600289 KDM5AP29375 1690 aaKnown RBP24.56■■□□□ 1.52
LSM4-206ENST00000600289 NAIPQ13075 1403 aa24.56■■□□□ 1.52
LSM4-206ENST00000600289 HFM1A2PYH4 1435 aa24.55■■□□□ 1.52
LSM4-206ENST00000600289 UBR1Q8IWV7 1749 aa24.55■■□□□ 1.52
LSM4-206ENST00000600289 XIRP1Q702N8 1843 aaKnown RBP24.54■■□□□ 1.52
LSM4-206ENST00000600289 E9PCH4 1651 aa24.54■■□□□ 1.52
LSM4-206ENST00000600289 NPHP4O75161 1426 aaPredicted RBP24.53■■□□□ 1.52
LSM4-206ENST00000600289 UGGT1Q9NYU2 1555 aa24.53■■□□□ 1.52
LSM4-206ENST00000600289 POTEAQ6S8J7 498 aa24.51■■□□□ 1.51
LSM4-206ENST00000600289 NOS1P29475 1434 aa24.51■■□□□ 1.51
LSM4-206ENST00000600289 PIK3C2BO00750 1634 aa24.49■■□□□ 1.51
LSM4-206ENST00000600289 ANKLE2Q86XL3 938 aa24.47■■□□□ 1.51
LSM4-206ENST00000600289 NUP155O75694 1391 aa24.43■■□□□ 1.5
LSM4-206ENST00000600289 SPHKAPQ2M3C7 1700 aa24.42■■□□□ 1.5
LSM4-206ENST00000600289 ADGRB3O60242 1522 aa24.4■■□□□ 1.5
LSM4-206ENST00000600289 SLIT1O75093 1534 aa24.4■■□□□ 1.5
LSM4-206ENST00000600289 THEMISQ8N1K5 641 aaPredicted RBP24.4■■□□□ 1.5
LSM4-206ENST00000600289 ARHGAP23Q9P227 1491 aa24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms