RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 KDM5DQ9BY66 1539 aa27.51■■□□□ 1.99
SHKBP1-204ENST00000594862 DUOX2Q9NRD8 1548 aa27.5■■□□□ 1.99
SHKBP1-204ENST00000594862 DAPK1P53355 1430 aa27.5■■□□□ 1.99
SHKBP1-204ENST00000594862 ABCC5O15440 1437 aa27.49■■□□□ 1.99
SHKBP1-204ENST00000594862 RNF17Q9BXT8 1623 aaKnown RBP27.49■■□□□ 1.99
SHKBP1-204ENST00000594862 ZC3H13Q5T200 1668 aaKnown RBP27.45■■□□□ 1.98
SHKBP1-204ENST00000594862 PTPRKQ15262 1439 aa27.42■■□□□ 1.98
SHKBP1-204ENST00000594862 ERBINQ96RT1 1412 aa27.42■■□□□ 1.98
SHKBP1-204ENST00000594862 KIF15Q9NS87 1388 aa27.42■■□□□ 1.98
SHKBP1-204ENST00000594862 MYO3AQ8NEV4 1616 aa27.4■■□□□ 1.98
SHKBP1-204ENST00000594862 WASHC2CQ9Y4E1 1318 aa27.4■■□□□ 1.98
SHKBP1-204ENST00000594862 ANKRD30AQ9BXX3 1397 aa27.39■■□□□ 1.98
SHKBP1-204ENST00000594862 ZNF142P52746 1687 aaPredicted RBP27.39■■□□□ 1.97
SHKBP1-204ENST00000594862 PZPP20742 1482 aa27.38■■□□□ 1.97
SHKBP1-204ENST00000594862 CERKQ8TCT0 537 aa27.36■■□□□ 1.97
SHKBP1-204ENST00000594862 ADGRL2O95490 1459 aa27.35■■□□□ 1.97
SHKBP1-204ENST00000594862 FAM50AQ14320 339 aaKnown RBP27.34■■□□□ 1.97
SHKBP1-204ENST00000594862 MROH1Q8NDA8 1641 aa27.34■■□□□ 1.97
SHKBP1-204ENST00000594862 ABCC3O15438 1527 aa27.33■■□□□ 1.97
SHKBP1-204ENST00000594862 PRDM15P57071 1507 aaPredicted RBP27.33■■□□□ 1.97
SHKBP1-204ENST00000594862 DMRT2Q9Y5R5 561 aa27.33■■□□□ 1.97
SHKBP1-204ENST00000594862 CEP170BQ9Y4F5 1589 aaPredicted RBP27.33■■□□□ 1.97
SHKBP1-204ENST00000594862 STRCQ7RTU9 1775 aa27.31■■□□□ 1.96
SHKBP1-204ENST00000594862 RRP7BPQ9NSQ0 103 aa27.31■■□□□ 1.96
SHKBP1-204ENST00000594862 NCOA1Q15788 1441 aa27.31■■□□□ 1.96
SHKBP1-204ENST00000594862 DEPDC5O75140 1603 aa27.3■■□□□ 1.96
SHKBP1-204ENST00000594862 TNRQ92752 1358 aa27.27■■□□□ 1.96
SHKBP1-204ENST00000594862 CAMSAP1Q5T5Y3 1602 aa27.27■■□□□ 1.96
SHKBP1-204ENST00000594862 A2ML1A8K2U0 1454 aa27.26■■□□□ 1.95
SHKBP1-204ENST00000594862 PLA2R1Q13018 1463 aa27.25■■□□□ 1.95
SHKBP1-204ENST00000594862 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.25■■□□□ 1.95
SHKBP1-204ENST00000594862 CEP152O94986 1710 aa27.25■■□□□ 1.95
SHKBP1-204ENST00000594862 KANK1Q14678 1352 aa27.24■■□□□ 1.95
SHKBP1-204ENST00000594862 CHIC2Q9UKJ5 165 aa27.24■■□□□ 1.95
SHKBP1-204ENST00000594862 PTPRTO14522 1441 aa27.24■■□□□ 1.95
SHKBP1-204ENST00000594862 NLRP1Q9C000 1473 aa27.23■■□□□ 1.95
SHKBP1-204ENST00000594862 SPATA31D1Q6ZQQ2 1576 aa27.22■■□□□ 1.95
SHKBP1-204ENST00000594862 ARHGAP31Q2M1Z3 1444 aa27.19■■□□□ 1.94
SHKBP1-204ENST00000594862 ROCK1Q13464 1354 aa27.19■■□□□ 1.94
SHKBP1-204ENST00000594862 FBXO31Q5XUX0 539 aaPredicted RBP27.18■■□□□ 1.94
SHKBP1-204ENST00000594862 ANKRD50Q9ULJ7 1429 aa27.17■■□□□ 1.94
SHKBP1-204ENST00000594862 ERVK-7P63135 1459 aa27.17■■□□□ 1.94
SHKBP1-204ENST00000594862 LMTK2Q8IWU2 1503 aa27.16■■□□□ 1.94
SHKBP1-204ENST00000594862 VWDEQ8N2E2 1590 aa27.15■■□□□ 1.94
SHKBP1-204ENST00000594862 PKD2Q13563 968 aa27.15■■□□□ 1.94
SHKBP1-204ENST00000594862 UGGT1Q9NYU2 1555 aa27.11■■□□□ 1.93
SHKBP1-204ENST00000594862 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.11■■□□□ 1.93
SHKBP1-204ENST00000594862 RRBP1Q9P2E9 1410 aaKnown RBP27.1■■□□□ 1.93
SHKBP1-204ENST00000594862 PPARGC1BQ86YN6 1023 aaKnown RBP27.1■■□□□ 1.93
SHKBP1-204ENST00000594862 POLR1AO95602 1720 aaPredicted RBP27.08■■□□□ 1.93
SHKBP1-204ENST00000594862 EFCAB6Q5THR3 1501 aa27.08■■□□□ 1.93
SHKBP1-204ENST00000594862 UNC13BO14795 1591 aa27.07■■□□□ 1.92
SHKBP1-204ENST00000594862 THEMISQ8N1K5 641 aaPredicted RBP27.07■■□□□ 1.92
SHKBP1-204ENST00000594862 RPRD2Q5VT52 1461 aaKnown RBP27.03■■□□□ 1.92
SHKBP1-204ENST00000594862 NCKAP5LQ9HCH0 1330 aa27.03■■□□□ 1.92
SHKBP1-204ENST00000594862 TET3O43151 1660 aa27.01■■□□□ 1.92
SHKBP1-204ENST00000594862 CFAP65Q6ZU64 1925 aaKnown RBP27■■□□□ 1.91
SHKBP1-204ENST00000594862 LTBP4Q8N2S1 1624 aa27■■□□□ 1.91
SHKBP1-204ENST00000594862 UBR1Q8IWV7 1749 aa26.99■■□□□ 1.91
SHKBP1-204ENST00000594862 ITGAEP38570 1179 aa26.99■■□□□ 1.91
SHKBP1-204ENST00000594862 KDM5AP29375 1690 aaKnown RBP26.98■■□□□ 1.91
SHKBP1-204ENST00000594862 GCC2Q8IWJ2 1684 aa26.98■■□□□ 1.91
SHKBP1-204ENST00000594862 ANKLE2Q86XL3 938 aa26.98■■□□□ 1.91
SHKBP1-204ENST00000594862 NEURL4Q96JN8 1562 aa26.97■■□□□ 1.91
SHKBP1-204ENST00000594862 IQGAP3Q86VI3 1631 aa26.95■■□□□ 1.91
SHKBP1-204ENST00000594862 IQSEC2Q5JU85 1478 aa26.94■■□□□ 1.9
SHKBP1-204ENST00000594862 NOS1P29475 1434 aa26.94■■□□□ 1.9
SHKBP1-204ENST00000594862 MED14O60244 1454 aa26.93■■□□□ 1.9
SHKBP1-204ENST00000594862 PIK3C2BO00750 1634 aa26.92■■□□□ 1.9
SHKBP1-204ENST00000594862 SYNMO15061 1565 aa26.91■■□□□ 1.9
SHKBP1-204ENST00000594862 SLIT1O75093 1534 aa26.9■■□□□ 1.9
SHKBP1-204ENST00000594862 NPHP4O75161 1426 aaPredicted RBP26.9■■□□□ 1.9
SHKBP1-204ENST00000594862 IQGAP1P46940 1657 aa26.89■■□□□ 1.89
SHKBP1-204ENST00000594862 ARHGAP23Q9P227 1491 aa26.88■■□□□ 1.89
SHKBP1-204ENST00000594862 SLC52A1Q9NWF4 448 aa26.88■■□□□ 1.89
SHKBP1-204ENST00000594862 SCAF11Q99590 1463 aaKnown RBP26.87■■□□□ 1.89
SHKBP1-204ENST00000594862 ADGRB3O60242 1522 aa26.86■■□□□ 1.89
SHKBP1-204ENST00000594862 NUP155O75694 1391 aa26.85■■□□□ 1.89
SHKBP1-204ENST00000594862 DISP3Q9P2K9 1392 aa26.85■■□□□ 1.89
SHKBP1-204ENST00000594862 ILDR2Q71H61 639 aa26.85■■□□□ 1.89
SHKBP1-204ENST00000594862 STAG3Q9UJ98 1225 aa26.85■■□□□ 1.89
SHKBP1-204ENST00000594862 E9PCH4 1651 aa26.84■■□□□ 1.89
SHKBP1-204ENST00000594862 ZNF335Q9H4Z2 1342 aaPredicted RBP26.83■■□□□ 1.89
SHKBP1-204ENST00000594862 CPS1P31327 1500 aa26.82■■□□□ 1.88
SHKBP1-204ENST00000594862 NAIPQ13075 1403 aa26.82■■□□□ 1.88
SHKBP1-204ENST00000594862 IDI1Q13907 227 aa26.81■■□□□ 1.88
SHKBP1-204ENST00000594862 EID1Q9Y6B2 187 aa26.81■■□□□ 1.88
SHKBP1-204ENST00000594862 TMEM2Q9UHN6 1383 aa26.81■■□□□ 1.88
SHKBP1-204ENST00000594862 HFM1A2PYH4 1435 aa26.81■■□□□ 1.88
SHKBP1-204ENST00000594862 TXNDC2Q86VQ3 553 aa26.76■■□□□ 1.87
SHKBP1-204ENST00000594862 TMEM131LA2VDJ0 1609 aa26.71■■□□□ 1.87
SHKBP1-204ENST00000594862 SPHKAPQ2M3C7 1700 aa26.7■■□□□ 1.87
SHKBP1-204ENST00000594862 LTKP29376 864 aa26.7■■□□□ 1.86
SHKBP1-204ENST00000594862 SOCS7O14512 581 aa26.68■■□□□ 1.86
SHKBP1-204ENST00000594862 HDGFP51858 240 aaKnown RBP26.68■■□□□ 1.86
SHKBP1-204ENST00000594862 UBAP1LF5GYI3 381 aa26.66■■□□□ 1.86
SHKBP1-204ENST00000594862 MYO5BQ9ULV0 1848 aa26.65■■□□□ 1.86
SHKBP1-204ENST00000594862 ZFYVE9O95405 1425 aa26.64■■□□□ 1.85
SHKBP1-204ENST00000594862 ACIN1Q9UKV3 1341 aaKnown RBP26.63■■□□□ 1.85
SHKBP1-204ENST00000594862 RIMS2Q9UQ26 1411 aa26.62■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms