RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 DHX29Q7Z478 1369 aaKnown RBP32.59■■■□□ 2.81
ATG4D-209ENST00000588857 ATP10AO60312 1499 aa32.58■■■□□ 2.81
ATG4D-209ENST00000588857 EIF2AK4Q9P2K8 1649 aaKnown RBP32.58■■■□□ 2.81
ATG4D-209ENST00000588857 SLC4A1APQ9BWU0 796 aaKnown RBP32.58■■■□□ 2.81
ATG4D-209ENST00000588857 KDM5DQ9BY66 1539 aa32.58■■■□□ 2.81
ATG4D-209ENST00000588857 A2MP01023 1474 aa32.57■■■□□ 2.8
ATG4D-209ENST00000588857 PZPP20742 1482 aa32.56■■■□□ 2.8
ATG4D-209ENST00000588857 DIP2CQ9Y2E4 1556 aa32.54■■■□□ 2.8
ATG4D-209ENST00000588857 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.5■■■□□ 2.79
ATG4D-209ENST00000588857 DEPDC5O75140 1603 aa32.49■■■□□ 2.79
ATG4D-209ENST00000588857 KIF3BO15066 747 aa32.48■■■□□ 2.79
ATG4D-209ENST00000588857 IQGAP3Q86VI3 1631 aa32.48■■■□□ 2.79
ATG4D-209ENST00000588857 FAM135AQ9P2D6 1515 aa32.47■■■□□ 2.79
ATG4D-209ENST00000588857 ADAMTSL3P82987 1691 aa32.47■■■□□ 2.79
ATG4D-209ENST00000588857 BCORL1Q5H9F3 1711 aa32.46■■■□□ 2.79
ATG4D-209ENST00000588857 MLECQ14165 292 aa32.44■■■□□ 2.78
ATG4D-209ENST00000588857 PKD2Q13563 968 aa32.41■■■□□ 2.78
ATG4D-209ENST00000588857 SIGLEC1Q9BZZ2 1709 aa32.41■■■□□ 2.78
ATG4D-209ENST00000588857 FOXD1Q16676 465 aa32.41■■■□□ 2.78
ATG4D-209ENST00000588857 KANK1Q14678 1352 aa32.4■■■□□ 2.78
ATG4D-209ENST00000588857 RNF17Q9BXT8 1623 aaKnown RBP32.39■■■□□ 2.78
ATG4D-209ENST00000588857 PTPRMP28827 1452 aa32.39■■■□□ 2.78
ATG4D-209ENST00000588857 SIN3AQ96ST3 1273 aa32.39■■■□□ 2.78
ATG4D-209ENST00000588857 PRDM15P57071 1507 aaPredicted RBP32.38■■■□□ 2.77
ATG4D-209ENST00000588857 NEUROD1Q13562 356 aa32.37■■■□□ 2.77
ATG4D-209ENST00000588857 MROH1Q8NDA8 1641 aa32.36■■■□□ 2.77
ATG4D-209ENST00000588857 REREQ9P2R6 1566 aa32.35■■■□□ 2.77
ATG4D-209ENST00000588857 MADDQ8WXG6 1647 aa32.35■■■□□ 2.77
ATG4D-209ENST00000588857 ANKRD30BQ9BXX2 1392 aa32.34■■■□□ 2.77
ATG4D-209ENST00000588857 VWDEQ8N2E2 1590 aa32.33■■■□□ 2.77
ATG4D-209ENST00000588857 AGLP35573 1532 aa32.29■■■□□ 2.76
ATG4D-209ENST00000588857 TET3O43151 1660 aa32.29■■■□□ 2.76
ATG4D-209ENST00000588857 GGT6Q6P531 493 aa32.28■■■□□ 2.76
ATG4D-209ENST00000588857 TIMELESSQ9UNS1 1208 aa32.25■■■□□ 2.75
ATG4D-209ENST00000588857 CEP152O94986 1710 aa32.24■■■□□ 2.75
ATG4D-209ENST00000588857 E9PCH4 1651 aa32.23■■■□□ 2.75
ATG4D-209ENST00000588857 RIMS1Q86UR5 1692 aaKnown RBP32.22■■■□□ 2.75
ATG4D-209ENST00000588857 LMTK2Q8IWU2 1503 aa32.2■■■□□ 2.75
ATG4D-209ENST00000588857 TONSLQ96HA7 1378 aa32.2■■■□□ 2.74
ATG4D-209ENST00000588857 RPRD2Q5VT52 1461 aaKnown RBP32.18■■■□□ 2.74
ATG4D-209ENST00000588857 PLPPR3Q6T4P5 718 aa32.18■■■□□ 2.74
ATG4D-209ENST00000588857 WASHC2CQ9Y4E1 1318 aa32.16■■■□□ 2.74
ATG4D-209ENST00000588857 ZC3H13Q5T200 1668 aaKnown RBP32.16■■■□□ 2.74
ATG4D-209ENST00000588857 EFCAB6Q5THR3 1501 aa32.16■■■□□ 2.74
ATG4D-209ENST00000588857 ESF1Q9H501 851 aaKnown RBP32.15■■■□□ 2.74
ATG4D-209ENST00000588857 ABCC3O15438 1527 aa32.14■■■□□ 2.74
ATG4D-209ENST00000588857 FER1L4A9Z1Z3 1794 aa32.13■■■□□ 2.73
ATG4D-209ENST00000588857 CEBPAP49715 358 aaPredicted RBP32.11■■■□□ 2.73
ATG4D-209ENST00000588857 SPHKAPQ2M3C7 1700 aa32.11■■■□□ 2.73
ATG4D-209ENST00000588857 CAMSAP1Q5T5Y3 1602 aa32.1■■■□□ 2.73
ATG4D-209ENST00000588857 CCDC144AA2RUR9 1427 aa32.09■■■□□ 2.73
ATG4D-209ENST00000588857 PLA2R1Q13018 1463 aa32.08■■■□□ 2.73
ATG4D-209ENST00000588857 PPP6R1Q9UPN7 881 aa32.07■■■□□ 2.72
ATG4D-209ENST00000588857 CNTLNQ9NXG0 1405 aa32.04■■■□□ 2.72
ATG4D-209ENST00000588857 CFAP65Q6ZU64 1925 aaKnown RBP32.04■■■□□ 2.72
ATG4D-209ENST00000588857 PTPRTO14522 1441 aa32.04■■■□□ 2.72
ATG4D-209ENST00000588857 TRPM2O94759 1503 aa32.03■■■□□ 2.72
ATG4D-209ENST00000588857 PPP1R15AO75807 674 aaPredicted RBP32■■■□□ 2.71
ATG4D-209ENST00000588857 NPATQ14207 1427 aa32■■■□□ 2.71
ATG4D-209ENST00000588857 CLTCQ00610 1675 aaKnown RBP31.98■■■□□ 2.71
ATG4D-209ENST00000588857 LMTK3Q96Q04 1460 aa31.98■■■□□ 2.71
ATG4D-209ENST00000588857 L3MBTL2Q969R5 705 aa31.98■■■□□ 2.71
ATG4D-209ENST00000588857 ARHGAP31Q2M1Z3 1444 aa31.97■■■□□ 2.71
ATG4D-209ENST00000588857 ZMYM3Q14202 1370 aa31.96■■■□□ 2.71
ATG4D-209ENST00000588857 CLTCL1P53675 1640 aa31.92■■■□□ 2.7
ATG4D-209ENST00000588857 HSPA2P54652 639 aa31.88■■■□□ 2.69
ATG4D-209ENST00000588857 C3P01024 1663 aa31.88■■■□□ 2.69
ATG4D-209ENST00000588857 KIF1BO60333 1816 aa31.87■■■□□ 2.69
ATG4D-209ENST00000588857 PREX1Q8TCU6 1659 aa31.86■■■□□ 2.69
ATG4D-209ENST00000588857 NOS1P29475 1434 aa31.85■■■□□ 2.69
ATG4D-209ENST00000588857 MROH2AA6NES4 1674 aa31.84■■■□□ 2.69
ATG4D-209ENST00000588857 UGGT1Q9NYU2 1555 aa31.83■■■□□ 2.69
ATG4D-209ENST00000588857 UHRF1BP1Q6BDS2 1440 aa31.82■■■□□ 2.68
ATG4D-209ENST00000588857 RGL3Q3MIN7 710 aa31.81■■■□□ 2.68
ATG4D-209ENST00000588857 SETD1BQ9UPS6 1966 aaKnown RBP31.8■■■□□ 2.68
ATG4D-209ENST00000588857 SPATA31E1Q6ZUB1 1445 aa31.8■■■□□ 2.68
ATG4D-209ENST00000588857 SYNMO15061 1565 aa31.8■■■□□ 2.68
ATG4D-209ENST00000588857 DCAF11Q8TEB1 546 aa31.78■■■□□ 2.68
ATG4D-209ENST00000588857 NEURL4Q96JN8 1562 aa31.77■■■□□ 2.68
ATG4D-209ENST00000588857 PIK3C2BO00750 1634 aa31.76■■■□□ 2.68
ATG4D-209ENST00000588857 ERVK-7P63135 1459 aa31.76■■■□□ 2.68
ATG4D-209ENST00000588857 FBXO31Q5XUX0 539 aaPredicted RBP31.73■■■□□ 2.67
ATG4D-209ENST00000588857 KDM2AQ9Y2K7 1162 aa31.73■■■□□ 2.67
ATG4D-209ENST00000588857 SLC52A1Q9NWF4 448 aa31.72■■■□□ 2.67
ATG4D-209ENST00000588857 SPATA31D1Q6ZQQ2 1576 aa31.7■■■□□ 2.67
ATG4D-209ENST00000588857 ZNF326Q5BKZ1 582 aaKnown RBP31.7■■■□□ 2.67
ATG4D-209ENST00000588857 NBPF8Q3BBV2 869 aa31.69■■■□□ 2.66
ATG4D-209ENST00000588857 CHGAP10645 457 aaKnown RBP31.68■■■□□ 2.66
ATG4D-209ENST00000588857 ADGRB3O60242 1522 aa31.68■■■□□ 2.66
ATG4D-209ENST00000588857 ZNF316A6NFI3 1004 aaPredicted RBP31.64■■■□□ 2.66
ATG4D-209ENST00000588857 IDI1Q13907 227 aa31.64■■■□□ 2.66
ATG4D-209ENST00000588857 STAC3Q96MF2 364 aa31.64■■■□□ 2.65
ATG4D-209ENST00000588857 IFT172Q9UG01 1749 aa31.61■■■□□ 2.65
ATG4D-209ENST00000588857 PRAG1Q86YV5 1406 aa31.6■■■□□ 2.65
ATG4D-209ENST00000588857 TNRQ92752 1358 aa31.59■■■□□ 2.65
ATG4D-209ENST00000588857 MYO5BQ9ULV0 1848 aa31.59■■■□□ 2.65
ATG4D-209ENST00000588857 TMEM131LA2VDJ0 1609 aa31.57■■■□□ 2.65
ATG4D-209ENST00000588857 PPLO60437 1756 aa31.56■■■□□ 2.64
ATG4D-209ENST00000588857 RALGAPBQ86X10 1494 aa31.55■■■□□ 2.64
ATG4D-209ENST00000588857 RPGRIP1LQ68CZ1 1315 aa31.55■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms