RNA–Protein interactions for RNA: ENST00000582844.5

CSNK1D-221, Transcript of casein kinase 1 delta, human

TSL 5

Gene CSNK1D, Length 957 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSNK1D-221	ENST00000582844	KDM5D	Q9BY66	1539 aa		33.27	■■■□□ 2.92
CSNK1D-221	ENST00000582844	NCOA1	Q15788	1441 aa		33.27	■■■□□ 2.92
CSNK1D-221	ENST00000582844	FBXO31	Q5XUX0	539 aa	Predicted RBP	33.25	■■■□□ 2.91
CSNK1D-221	ENST00000582844	ZNF142	P52746	1687 aa	Predicted RBP	33.24	■■■□□ 2.91
CSNK1D-221	ENST00000582844	PTPRT	O14522	1441 aa		33.24	■■■□□ 2.91
CSNK1D-221	ENST00000582844	FAM135A	Q9P2D6	1515 aa		33.23	■■■□□ 2.91
CSNK1D-221	ENST00000582844	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	33.22	■■■□□ 2.91
CSNK1D-221	ENST00000582844	ABCC5	O15440	1437 aa		33.21	■■■□□ 2.91
CSNK1D-221	ENST00000582844	FGD6	Q6ZV73	1430 aa		33.21	■■■□□ 2.91
CSNK1D-221	ENST00000582844	RNF17	Q9BXT8	1623 aa	Known RBP	33.2	■■■□□ 2.9
CSNK1D-221	ENST00000582844	CROCC2	H7BZ55	1655 aa		33.19	■■■□□ 2.9
CSNK1D-221	ENST00000582844	PZP	P20742	1482 aa		33.18	■■■□□ 2.9
CSNK1D-221	ENST00000582844	NCKAP5L	Q9HCH0	1330 aa		33.18	■■■□□ 2.9
CSNK1D-221	ENST00000582844	EIF2AK4	Q9P2K8	1649 aa	Known RBP	33.17	■■■□□ 2.9
CSNK1D-221	ENST00000582844	TCOF1	Q13428	1488 aa	Known RBP	33.17	■■■□□ 2.9
CSNK1D-221	ENST00000582844	TNR	Q92752	1358 aa		33.15	■■■□□ 2.9
CSNK1D-221	ENST00000582844	DUOX2	Q9NRD8	1548 aa		33.15	■■■□□ 2.9
CSNK1D-221	ENST00000582844	DNMT1	P26358	1616 aa	Known RBP	33.14	■■■□□ 2.9
CSNK1D-221	ENST00000582844	SHANK2	Q9UPX8	1470 aa		33.14	■■■□□ 2.9
CSNK1D-221	ENST00000582844	DAPK1	P53355	1430 aa		33.14	■■■□□ 2.9
CSNK1D-221	ENST00000582844	RRP7BP	Q9NSQ0	103 aa		33.14	■■■□□ 2.9
CSNK1D-221	ENST00000582844	A2ML1	A8K2U0	1454 aa		33.13	■■■□□ 2.89
CSNK1D-221	ENST00000582844	KIF15	Q9NS87	1388 aa		33.12	■■■□□ 2.89
CSNK1D-221	ENST00000582844	ABCC3	O15438	1527 aa		33.11	■■■□□ 2.89
CSNK1D-221	ENST00000582844	PLA2R1	Q13018	1463 aa		33.11	■■■□□ 2.89
CSNK1D-221	ENST00000582844	MROH1	Q8NDA8	1641 aa		33.1	■■■□□ 2.89
CSNK1D-221	ENST00000582844	ZC3H13	Q5T200	1668 aa	Known RBP	33.08	■■■□□ 2.89
CSNK1D-221	ENST00000582844	PKD2	Q13563	968 aa		33.08	■■■□□ 2.89
CSNK1D-221	ENST00000582844	CHIC2	Q9UKJ5	165 aa		33.08	■■■□□ 2.89
CSNK1D-221	ENST00000582844	CEP152	O94986	1710 aa		33.05	■■■□□ 2.88
CSNK1D-221	ENST00000582844	CFAP65	Q6ZU64	1925 aa	Known RBP	33.04	■■■□□ 2.88
CSNK1D-221	ENST00000582844	ERBIN	Q96RT1	1412 aa		33.02	■■■□□ 2.88
CSNK1D-221	ENST00000582844	LTBP4	Q8N2S1	1624 aa		33.02	■■■□□ 2.88
CSNK1D-221	ENST00000582844	FAM50A	Q14320	339 aa	Known RBP	33.01	■■■□□ 2.87
CSNK1D-221	ENST00000582844	ANKRD30A	Q9BXX3	1397 aa		33	■■■□□ 2.87
CSNK1D-221	ENST00000582844	NLRP1	Q9C000	1473 aa		32.99	■■■□□ 2.87
CSNK1D-221	ENST00000582844	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	32.97	■■■□□ 2.87	6e-7	■□□□□ 9.8
CSNK1D-221	ENST00000582844	SPATA31D1	Q6ZQQ2	1576 aa		32.96	■■■□□ 2.87
CSNK1D-221	ENST00000582844	THEMIS	Q8N1K5	641 aa	Predicted RBP	32.95	■■■□□ 2.87
CSNK1D-221	ENST00000582844	PRDM15	P57071	1507 aa	Predicted RBP	32.95	■■■□□ 2.87
CSNK1D-221	ENST00000582844	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	32.95	■■■□□ 2.86
CSNK1D-221	ENST00000582844	ERVK-7	P63135	1459 aa		32.94	■■■□□ 2.86
CSNK1D-221	ENST00000582844	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	32.94	■■■□□ 2.86	2e-11	■■■■■ 35.6
CSNK1D-221	ENST00000582844	UGGT1	Q9NYU2	1555 aa		32.93	■■■□□ 2.86
CSNK1D-221	ENST00000582844	POLR1A	O95602	1720 aa	Predicted RBP	32.93	■■■□□ 2.86
CSNK1D-221	ENST00000582844	DEPDC5	O75140	1603 aa		32.92	■■■□□ 2.86
CSNK1D-221	ENST00000582844	NEURL4	Q96JN8	1562 aa		32.88	■■■□□ 2.85
CSNK1D-221	ENST00000582844	ADGRL2	O95490	1459 aa		32.88	■■■□□ 2.85
CSNK1D-221	ENST00000582844	ANKLE2	Q86XL3	938 aa		32.88	■■■□□ 2.85
CSNK1D-221	ENST00000582844	ARHGAP31	Q2M1Z3	1444 aa		32.86	■■■□□ 2.85
CSNK1D-221	ENST00000582844	KANK1	Q14678	1352 aa		32.86	■■■□□ 2.85
CSNK1D-221	ENST00000582844	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.85	■■■□□ 2.85
CSNK1D-221	ENST00000582844	IQSEC2	Q5JU85	1478 aa		32.81	■■■□□ 2.84
CSNK1D-221	ENST00000582844	VWDE	Q8N2E2	1590 aa		32.79	■■■□□ 2.84
CSNK1D-221	ENST00000582844	UBR1	Q8IWV7	1749 aa		32.78	■■■□□ 2.84
CSNK1D-221	ENST00000582844	LMTK2	Q8IWU2	1503 aa		32.77	■■■□□ 2.84
CSNK1D-221	ENST00000582844	ANKRD50	Q9ULJ7	1429 aa		32.76	■■■□□ 2.83
CSNK1D-221	ENST00000582844	MED14	O60244	1454 aa		32.75	■■■□□ 2.83
CSNK1D-221	ENST00000582844	NPHP4	O75161	1426 aa	Predicted RBP	32.75	■■■□□ 2.83
CSNK1D-221	ENST00000582844	IQGAP1	P46940	1657 aa		32.7	■■■□□ 2.83
CSNK1D-221	ENST00000582844	PIK3C2B	O00750	1634 aa		32.68	■■■□□ 2.82
CSNK1D-221	ENST00000582844	ITGAE	P38570	1179 aa		32.67	■■■□□ 2.82
CSNK1D-221	ENST00000582844	EFCAB6	Q5THR3	1501 aa		32.67	■■■□□ 2.82
CSNK1D-221	ENST00000582844	IDI1	Q13907	227 aa		32.65	■■■□□ 2.82
CSNK1D-221	ENST00000582844	UBAP1L	F5GYI3	381 aa		32.64	■■■□□ 2.82
CSNK1D-221	ENST00000582844	ROCK1	Q13464	1354 aa		32.63	■■■□□ 2.81
CSNK1D-221	ENST00000582844	LTK	P29376	864 aa		32.63	■■■□□ 2.81
CSNK1D-221	ENST00000582844	SYNM	O15061	1565 aa		32.62	■■■□□ 2.81
CSNK1D-221	ENST00000582844	CPS1	P31327	1500 aa		32.62	■■■□□ 2.81
CSNK1D-221	ENST00000582844	ARHGAP23	Q9P227	1491 aa		32.62	■■■□□ 2.81
CSNK1D-221	ENST00000582844	TXNDC2	Q86VQ3	553 aa		32.62	■■■□□ 2.81
CSNK1D-221	ENST00000582844	STAG3	Q9UJ98	1225 aa		32.62	■■■□□ 2.81
CSNK1D-221	ENST00000582844	SLIT1	O75093	1534 aa		32.61	■■■□□ 2.81
CSNK1D-221	ENST00000582844	SCAF11	Q99590	1463 aa	Known RBP	32.61	■■■□□ 2.81
CSNK1D-221	ENST00000582844	NOS1	P29475	1434 aa		32.6	■■■□□ 2.81
CSNK1D-221	ENST00000582844	UNC13B	O14795	1591 aa		32.57	■■■□□ 2.8
CSNK1D-221	ENST00000582844	TET3	O43151	1660 aa		32.56	■■■□□ 2.8
CSNK1D-221	ENST00000582844	EID1	Q9Y6B2	187 aa		32.56	■■■□□ 2.8
CSNK1D-221	ENST00000582844	KDM5A	P29375	1690 aa	Known RBP	32.56	■■■□□ 2.8
CSNK1D-221	ENST00000582844	TMEM2	Q9UHN6	1383 aa		32.55	■■■□□ 2.8
CSNK1D-221	ENST00000582844	STRCP1	A6NGW2	1772 aa		32.55	■■■□□ 2.8
CSNK1D-221	ENST00000582844	RPRD2	Q5VT52	1461 aa	Known RBP	32.54	■■■□□ 2.8
CSNK1D-221	ENST00000582844	SLC52A1	Q9NWF4	448 aa		32.52	■■■□□ 2.8
CSNK1D-221	ENST00000582844	GCC2	Q8IWJ2	1684 aa		32.52	■■■□□ 2.8
CSNK1D-221	ENST00000582844	ADGRB3	O60242	1522 aa		32.46	■■■□□ 2.79
CSNK1D-221	ENST00000582844	IQGAP3	Q86VI3	1631 aa		32.45	■■■□□ 2.79
CSNK1D-221	ENST00000582844		E9PCH4	1651 aa		32.45	■■■□□ 2.79
CSNK1D-221	ENST00000582844	NUP155	O75694	1391 aa		32.45	■■■□□ 2.78
CSNK1D-221	ENST00000582844	TOM1	O60784	492 aa		32.44	■■■□□ 2.78
CSNK1D-221	ENST00000582844	RRBP1	Q9P2E9	1410 aa	Known RBP	32.43	■■■□□ 2.78
CSNK1D-221	ENST00000582844	LRRC7	Q96NW7	1537 aa		32.43	■■■□□ 2.78
CSNK1D-221	ENST00000582844	MYO5B	Q9ULV0	1848 aa		32.42	■■■□□ 2.78
CSNK1D-221	ENST00000582844	PIP4K2B	P78356	416 aa		32.42	■■■□□ 2.78
CSNK1D-221	ENST00000582844	SCAF1	Q9H7N4	1312 aa	Known RBP	32.41	■■■□□ 2.78
CSNK1D-221	ENST00000582844	SLC26A8	Q96RN1	970 aa		32.36	■■■□□ 2.77
CSNK1D-221	ENST00000582844	TMEM131L	A2VDJ0	1609 aa		32.35	■■■□□ 2.77
CSNK1D-221	ENST00000582844	ALK	Q9UM73	1620 aa		32.33	■■■□□ 2.77
CSNK1D-221	ENST00000582844	DISP3	Q9P2K9	1392 aa		32.32	■■■□□ 2.77
CSNK1D-221	ENST00000582844	CHGA	P10645	457 aa	Known RBP	32.32	■■■□□ 2.76
CSNK1D-221	ENST00000582844	BCAN	Q96GW7	911 aa		32.31	■■■□□ 2.76

Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms