RNA–Protein interactions for RNA: ENST00000580713.1

TOP3A-210, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 474 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-210ENST00000580713 PLXNC1O60486 1568 aa17.49■□□□□ 0.39
TOP3A-210ENST00000580713 KIAA1107Q9UPP5 1409 aa17.49■□□□□ 0.39
TOP3A-210ENST00000580713 ANKLE2Q86XL3 938 aa17.49■□□□□ 0.39
TOP3A-210ENST00000580713 DNMT1P26358 1616 aaKnown RBP17.49■□□□□ 0.39
TOP3A-210ENST00000580713 PLEKHH2Q8IVE3 1493 aa17.49■□□□□ 0.39
TOP3A-210ENST00000580713 FBXO31Q5XUX0 539 aaPredicted RBP17.48■□□□□ 0.39
TOP3A-210ENST00000580713 TNRQ92752 1358 aa17.48■□□□□ 0.39
TOP3A-210ENST00000580713 CCNB3Q8WWL7 1395 aa17.47■□□□□ 0.39
TOP3A-210ENST00000580713 INO80Q9ULG1 1556 aaPredicted RBP17.46■□□□□ 0.39
TOP3A-210ENST00000580713 NCBP3Q53F19 620 aaKnown RBP17.46■□□□□ 0.39
TOP3A-210ENST00000580713 CNKSR2Q8WXI2 1034 aa17.45■□□□□ 0.38
TOP3A-210ENST00000580713 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.44■□□□□ 0.38
TOP3A-210ENST00000580713 THEMISQ8N1K5 641 aaPredicted RBP17.44■□□□□ 0.38
TOP3A-210ENST00000580713 POLR1AO95602 1720 aaPredicted RBP17.44■□□□□ 0.38
TOP3A-210ENST00000580713 KIF3BO15066 747 aa17.43■□□□□ 0.38
TOP3A-210ENST00000580713 NEURL4Q96JN8 1562 aa17.43■□□□□ 0.38
TOP3A-210ENST00000580713 FYCO1Q9BQS8 1478 aa17.43■□□□□ 0.38
TOP3A-210ENST00000580713 ADGBQ8N7X0 1667 aa17.41■□□□□ 0.38
TOP3A-210ENST00000580713 ZNF644Q9H582 1327 aaPredicted RBP17.41■□□□□ 0.38
TOP3A-210ENST00000580713 NPHP4O75161 1426 aaPredicted RBP17.4■□□□□ 0.38
TOP3A-210ENST00000580713 WASHC2CQ9Y4E1 1318 aa17.4■□□□□ 0.38
TOP3A-210ENST00000580713 DHX29Q7Z478 1369 aaKnown RBP17.4■□□□□ 0.38
TOP3A-210ENST00000580713 VWDEQ8N2E2 1590 aa17.39■□□□□ 0.37
TOP3A-210ENST00000580713 MTUS2Q5JR59 1369 aa17.39■□□□□ 0.37
TOP3A-210ENST00000580713 PZPP20742 1482 aa17.37■□□□□ 0.37
TOP3A-210ENST00000580713 FAM135AQ9P2D6 1515 aa17.37■□□□□ 0.37
TOP3A-210ENST00000580713 MIA2Q96PC5 1412 aa17.36■□□□□ 0.37
TOP3A-210ENST00000580713 ALKQ9UM73 1620 aa17.36■□□□□ 0.37
TOP3A-210ENST00000580713 RTEL1-TNFRSF6BF6WH68 1400 aa17.35■□□□□ 0.37
TOP3A-210ENST00000580713 UGGT1Q9NYU2 1555 aa17.35■□□□□ 0.37
TOP3A-210ENST00000580713 KDM5DQ9BY66 1539 aa17.34■□□□□ 0.37
TOP3A-210ENST00000580713 MED14O60244 1454 aa17.33■□□□□ 0.37
TOP3A-210ENST00000580713 NLRP1Q9C000 1473 aa17.33■□□□□ 0.37
TOP3A-210ENST00000580713 RGS17Q9UGC6 210 aaPredicted RBP17.33■□□□□ 0.36
TOP3A-210ENST00000580713 LRRC7Q96NW7 1537 aa17.32■□□□□ 0.36
TOP3A-210ENST00000580713 MBD5Q9P267 1494 aa17.32■□□□□ 0.36
TOP3A-210ENST00000580713 HOXD11P31277 338 aaPredicted RBP17.31■□□□□ 0.36
TOP3A-210ENST00000580713 DEPDC5O75140 1603 aa17.31■□□□□ 0.36
TOP3A-210ENST00000580713 IQGAP1P46940 1657 aa17.29■□□□□ 0.36
TOP3A-210ENST00000580713 RNF17Q9BXT8 1623 aaKnown RBP17.28■□□□□ 0.36
TOP3A-210ENST00000580713 TIAM1Q13009 1591 aa17.28■□□□□ 0.36
TOP3A-210ENST00000580713 STRCP1A6NGW2 1772 aa17.25■□□□□ 0.35
TOP3A-210ENST00000580713 CCDC141Q6ZP82 1450 aa17.25■□□□□ 0.35
TOP3A-210ENST00000580713 RSPH4AQ5TD94 716 aa17.25■□□□□ 0.35
TOP3A-210ENST00000580713 SYNMO15061 1565 aa17.24■□□□□ 0.35
TOP3A-210ENST00000580713 POTEAQ6S8J7 498 aa17.24■□□□□ 0.35
TOP3A-210ENST00000580713 TSPY4P0CV99 314 aa17.23■□□□□ 0.35
TOP3A-210ENST00000580713 TSPY10P0CW01 314 aa17.23■□□□□ 0.35
TOP3A-210ENST00000580713 RNF216Q9NWF9 866 aaPredicted RBP17.22■□□□□ 0.35
TOP3A-210ENST00000580713 TXNDC2Q86VQ3 553 aa17.21■□□□□ 0.35
TOP3A-210ENST00000580713 EHBP1L1Q8N3D4 1523 aa17.21■□□□□ 0.34
TOP3A-210ENST00000580713 CEP162Q5TB80 1403 aa17.2■□□□□ 0.34
TOP3A-210ENST00000580713 CAMSAP2Q08AD1 1489 aa17.19■□□□□ 0.34
TOP3A-210ENST00000580713 SCAF11Q99590 1463 aaKnown RBP17.18■□□□□ 0.34
TOP3A-210ENST00000580713 LTKP29376 864 aa17.18■□□□□ 0.34
TOP3A-210ENST00000580713 ERVK-7P63135 1459 aa17.18■□□□□ 0.34
TOP3A-210ENST00000580713 EID1Q9Y6B2 187 aa17.17■□□□□ 0.34
TOP3A-210ENST00000580713 FAM135BQ49AJ0 1406 aa17.16■□□□□ 0.34
TOP3A-210ENST00000580713 ABCC3O15438 1527 aa17.16■□□□□ 0.34
TOP3A-210ENST00000580713 ZC3H13Q5T200 1668 aaKnown RBP17.14■□□□□ 0.33
TOP3A-210ENST00000580713 CFAP65Q6ZU64 1925 aaKnown RBP17.13■□□□□ 0.33
TOP3A-210ENST00000580713 NCOA2Q15596 1464 aa17.12■□□□□ 0.33
TOP3A-210ENST00000580713 STAG3Q9UJ98 1225 aa17.12■□□□□ 0.33
TOP3A-210ENST00000580713 TMEM94Q12767 1356 aa17.12■□□□□ 0.33
TOP3A-210ENST00000580713 UBR1Q8IWV7 1749 aa17.11■□□□□ 0.33
TOP3A-210ENST00000580713 NPM3O75607 178 aaKnown RBP17.11■□□□□ 0.33
TOP3A-210ENST00000580713 PROSER2Q86WR7 435 aaPredicted RBP17.11■□□□□ 0.33
TOP3A-210ENST00000580713 RBM33Q96EV2 1170 aaKnown RBP17.1■□□□□ 0.33
TOP3A-210ENST00000580713 XIRP1Q702N8 1843 aaKnown RBP17.1■□□□□ 0.33
TOP3A-210ENST00000580713 ARHGAP23Q9P227 1491 aa17.09■□□□□ 0.33
TOP3A-210ENST00000580713 ARHGEF5Q12774 1597 aa17.09■□□□□ 0.33
TOP3A-210ENST00000580713 SLIT1O75093 1534 aa17.08■□□□□ 0.32
TOP3A-210ENST00000580713 KCNA6P17658 529 aa17.07■□□□□ 0.32
TOP3A-210ENST00000580713 SLC26A8Q96RN1 970 aa17.06■□□□□ 0.32
TOP3A-210ENST00000580713 ROBO1Q9Y6N7 1651 aa17.06■□□□□ 0.32
TOP3A-210ENST00000580713 SETD1AO15047 1707 aaKnown RBP17.05■□□□□ 0.32
TOP3A-210ENST00000580713 CEP152O94986 1710 aa17.05■□□□□ 0.32
TOP3A-210ENST00000580713 DCAF8L1A6NGE4 600 aa17.05■□□□□ 0.32
TOP3A-210ENST00000580713 TMEM2Q9UHN6 1383 aa17.04■□□□□ 0.32
TOP3A-210ENST00000580713 BCANQ96GW7 911 aa17.04■□□□□ 0.32
TOP3A-210ENST00000580713 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.04■□□□□ 0.32
TOP3A-210ENST00000580713 EIF2AK4Q9P2K8 1649 aaKnown RBP17.03■□□□□ 0.32
TOP3A-210ENST00000580713 LRRC9Q6ZRR7 1453 aa17.03■□□□□ 0.32
TOP3A-210ENST00000580713 MROH1Q8NDA8 1641 aa17.03■□□□□ 0.32
TOP3A-210ENST00000580713 JCADQ9P266 1359 aa17.02■□□□□ 0.32
TOP3A-210ENST00000580713 MEX3CQ5U5Q3 659 aaKnown RBP17.02■□□□□ 0.32
TOP3A-210ENST00000580713 TRIM52Q96A61 297 aa17.02■□□□□ 0.32
TOP3A-210ENST00000580713 MSH6P52701 1360 aa17.02■□□□□ 0.31
TOP3A-210ENST00000580713 UPF1Q92900 1129 aaKnown RBP eCLIP17.01■□□□□ 0.31
TOP3A-210ENST00000580713 SLAIN2Q9P270 581 aa17.01■□□□□ 0.31
TOP3A-210ENST00000580713 MAST1Q9Y2H9 1570 aa17.01■□□□□ 0.31
TOP3A-210ENST00000580713 ARHGAP31Q2M1Z3 1444 aa17■□□□□ 0.31
TOP3A-210ENST00000580713 MAP3K1Q13233 1512 aa16.99■□□□□ 0.31
TOP3A-210ENST00000580713 PIK3C2BO00750 1634 aa16.99■□□□□ 0.31
TOP3A-210ENST00000580713 DUOX2Q9NRD8 1548 aa16.98■□□□□ 0.31
TOP3A-210ENST00000580713 IDI1Q13907 227 aa16.98■□□□□ 0.31
TOP3A-210ENST00000580713 PHLPP1O60346 1717 aa16.98■□□□□ 0.31
TOP3A-210ENST00000580713 ZNF772Q68DY9 489 aaPredicted RBP16.97■□□□□ 0.31
TOP3A-210ENST00000580713 RRP7BPQ9NSQ0 103 aa16.97■□□□□ 0.31
TOP3A-210ENST00000580713 PRDM15P57071 1507 aaPredicted RBP16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms