RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 CTDP1Q9Y5B0 961 aaPredicted RBP3.78□□□□□ -1.8
SMCHD1-203ENST00000577880 CALD1Q05682 793 aaKnown RBP3.78□□□□□ -1.8
SMCHD1-203ENST00000577880 DDX10Q13206 875 aaKnown RBP3.78□□□□□ -1.8
SMCHD1-203ENST00000577880 ANO8Q9HCE9 1232 aaPredicted RBP3.78□□□□□ -1.8
SMCHD1-203ENST00000577880 CEP162Q5TB80 1403 aa3.78□□□□□ -1.8
SMCHD1-203ENST00000577880 FANCD2Q9BXW9 1451 aa3.78□□□□□ -1.8
SMCHD1-203ENST00000577880 FMN1Q68DA7 1419 aa3.78□□□□□ -1.8
SMCHD1-203ENST00000577880 HNRNPUQ00839 825 aaKnown RBP eCLIP3.78□□□□□ -1.81
SMCHD1-203ENST00000577880 PDE3BQ13370 1112 aa3.78□□□□□ -1.81
SMCHD1-203ENST00000577880 PKD2Q13563 968 aa3.78□□□□□ -1.81
SMCHD1-203ENST00000577880 TXNDC2Q86VQ3 553 aa3.78□□□□□ -1.81
SMCHD1-203ENST00000577880 TRIM34Q9BYJ4 488 aa3.78□□□□□ -1.81
SMCHD1-203ENST00000577880 CHMP3Q9Y3E7 222 aa3.78□□□□□ -1.81
SMCHD1-203ENST00000577880 TOM1O60784 492 aa3.77□□□□□ -1.81
SMCHD1-203ENST00000577880 TTC5Q8N0Z6 440 aa3.77□□□□□ -1.81
SMCHD1-203ENST00000577880 NUP155O75694 1391 aa3.77□□□□□ -1.81
SMCHD1-203ENST00000577880 PTPRMP28827 1452 aa3.77□□□□□ -1.81
SMCHD1-203ENST00000577880 STK31Q9BXU1 1019 aa3.77□□□□□ -1.81
SMCHD1-203ENST00000577880 YEATS2Q9ULM3 1422 aa3.77□□□□□ -1.81
SMCHD1-203ENST00000577880 WDHD1O75717 1129 aaPredicted RBP3.76□□□□□ -1.81
SMCHD1-203ENST00000577880 NOL10Q9BSC4 688 aaKnown RBP3.76□□□□□ -1.81
SMCHD1-203ENST00000577880 TAOK2Q9UL54 1235 aa3.76□□□□□ -1.81
SMCHD1-203ENST00000577880 NAP1L2Q9ULW6 460 aaPredicted RBP3.76□□□□□ -1.81
SMCHD1-203ENST00000577880 UBAP1LF5GYI3 381 aa3.76□□□□□ -1.81
SMCHD1-203ENST00000577880 RAPGEF4Q8WZA2 1011 aa3.76□□□□□ -1.81
SMCHD1-203ENST00000577880 PREX1Q8TCU6 1659 aa3.76□□□□□ -1.81
SMCHD1-203ENST00000577880 CCAR1Q8IX12 1150 aaKnown RBP3.76□□□□□ -1.81
SMCHD1-203ENST00000577880 EIF3AQ14152 1382 aaKnown RBP3.76□□□□□ -1.81
SMCHD1-203ENST00000577880 PEG3Q9GZU2 1588 aa3.76□□□□□ -1.81
SMCHD1-203ENST00000577880 MED14O60244 1454 aa3.76□□□□□ -1.81
SMCHD1-203ENST00000577880 GPRASP1Q5JY77 1395 aa3.76□□□□□ -1.81
SMCHD1-203ENST00000577880 NCLP19338 710 aaKnown RBP3.76□□□□□ -1.81
SMCHD1-203ENST00000577880 TEFQ10587 303 aa3.76□□□□□ -1.81
SMCHD1-203ENST00000577880 RAPGEF6Q8TEU7 1601 aa3.75□□□□□ -1.81
SMCHD1-203ENST00000577880 COG3Q96JB2 828 aa3.75□□□□□ -1.81
SMCHD1-203ENST00000577880 NLRP2Q9NX02 1062 aa3.75□□□□□ -1.81
SMCHD1-203ENST00000577880 USP35Q9P2H5 1018 aa3.75□□□□□ -1.81
SMCHD1-203ENST00000577880 FKBP8Q14318 412 aa3.75□□□□□ -1.81
SMCHD1-203ENST00000577880 RBM33Q96EV2 1170 aaKnown RBP3.75□□□□□ -1.81
SMCHD1-203ENST00000577880 DDRGK1Q96HY6 314 aa3.75□□□□□ -1.81
SMCHD1-203ENST00000577880 CCDC18Q5T9S5 1454 aa3.75□□□□□ -1.81
SMCHD1-203ENST00000577880 EPRSP07814 1512 aaKnown RBP3.75□□□□□ -1.81
SMCHD1-203ENST00000577880 FBXW7Q969H0 707 aa3.75□□□□□ -1.81
SMCHD1-203ENST00000577880 NGLY1Q96IV0 654 aa3.75□□□□□ -1.81
SMCHD1-203ENST00000577880 UACAQ9BZF9 1416 aa3.74□□□□□ -1.81
SMCHD1-203ENST00000577880 ESCO1Q5FWF5 840 aa3.74□□□□□ -1.81
SMCHD1-203ENST00000577880 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.74□□□□□ -1.813e-6■■■□□ 15.1
SMCHD1-203ENST00000577880 PHLDB1Q86UU1 1377 aa3.74□□□□□ -1.81
SMCHD1-203ENST00000577880 U2AF1L5P0DN76 240 aaPredicted RBP3.74□□□□□ -1.81
SMCHD1-203ENST00000577880 U2AF1Q01081 240 aaKnown RBP eCLIP3.74□□□□□ -1.813e-6■■■□□ 15.5
SMCHD1-203ENST00000577880 LMOD3Q0VAK6 560 aa3.74□□□□□ -1.81
SMCHD1-203ENST00000577880 AMOTL1Q8IY63 956 aa3.74□□□□□ -1.81
SMCHD1-203ENST00000577880 STRN4Q9NRL3 753 aa3.74□□□□□ -1.81
SMCHD1-203ENST00000577880 ATAD2BQ9ULI0 1458 aa3.74□□□□□ -1.81
SMCHD1-203ENST00000577880 MAGI1Q96QZ7 1491 aaPredicted RBP3.74□□□□□ -1.81
SMCHD1-203ENST00000577880 ANP32AP39687 249 aaKnown RBP3.74□□□□□ -1.81
SMCHD1-203ENST00000577880 CC2D1BQ5T0F9 858 aaKnown RBP3.74□□□□□ -1.81
SMCHD1-203ENST00000577880 PAXIP1Q6ZW49 1069 aaPredicted RBP3.74□□□□□ -1.81
SMCHD1-203ENST00000577880 TRAK1Q9UPV9 953 aa3.74□□□□□ -1.81
SMCHD1-203ENST00000577880 HSP90B1P14625 803 aaKnown RBP3.74□□□□□ -1.81
SMCHD1-203ENST00000577880 CNKSR2Q8WXI2 1034 aa3.74□□□□□ -1.81
SMCHD1-203ENST00000577880 TNIKQ9UKE5 1360 aa3.73□□□□□ -1.81
SMCHD1-203ENST00000577880 ANP32EQ9BTT0 268 aa3.73□□□□□ -1.81
SMCHD1-203ENST00000577880 VPS37DQ86XT2 251 aa3.73□□□□□ -1.81
SMCHD1-203ENST00000577880 FRAT1Q92837 279 aaPredicted RBP3.73□□□□□ -1.81
SMCHD1-203ENST00000577880 PRDM11Q9NQV5 511 aa3.73□□□□□ -1.81
SMCHD1-203ENST00000577880 IPO8O15397 1037 aaKnown RBP3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 NEXNQ0ZGT2 675 aa3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 CCDC136Q96JN2 1154 aa3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 EVC2Q86UK5 1308 aa3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 MINK1Q8N4C8 1332 aaPredicted RBP3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 VPS53Q5VIR6 699 aa3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 TCEAL9Q9UHQ7 104 aa3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 EIF4G3O43432 1585 aaKnown RBP3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 CPS1P31327 1500 aa3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 RAPGEF2Q9Y4G8 1499 aa3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 GNL2Q13823 731 aaKnown RBP3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 NBPF8Q3BBV2 869 aa3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 NBPF14Q5TI25 921 aa3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 C16orf71Q8IYS4 520 aaPredicted RBP3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 HIRIP3Q9BW71 556 aaPredicted RBP3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 ARHGAP35Q9NRY4 1499 aa3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 PTPRKQ15262 1439 aa3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 MARCH6O60337 910 aa3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 TOM1L2Q6ZVM7 507 aa3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 CFAP44Q96MT7 982 aa3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 PRM3Q9NNZ6 103 aa3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 PPP6R1Q9UPN7 881 aa3.72□□□□□ -1.81
SMCHD1-203ENST00000577880 NLRP6P59044 892 aa3.71□□□□□ -1.81
SMCHD1-203ENST00000577880 GPATCH3Q96I76 525 aa3.71□□□□□ -1.81
SMCHD1-203ENST00000577880 TOMM22Q9NS69 142 aa3.71□□□□□ -1.81
SMCHD1-203ENST00000577880 SMC4Q9NTJ3 1288 aa3.71□□□□□ -1.81
SMCHD1-203ENST00000577880 CUX1P39880 1505 aa3.71□□□□□ -1.82
SMCHD1-203ENST00000577880 SHROOM2Q13796 1616 aa3.71□□□□□ -1.82
SMCHD1-203ENST00000577880 ZRANB1Q9UGI0 708 aa3.71□□□□□ -1.82
SMCHD1-203ENST00000577880 PRDM2Q13029 1718 aa3.71□□□□□ -1.82
SMCHD1-203ENST00000577880 CCDC88BA6NC98 1476 aa3.71□□□□□ -1.82
SMCHD1-203ENST00000577880 PRG4Q92954 1404 aaPredicted RBP3.71□□□□□ -1.82
SMCHD1-203ENST00000577880 RAD21O60216 631 aa3.71□□□□□ -1.82
SMCHD1-203ENST00000577880 KIAA1211Q6ZU35 1233 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms