RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PIP4K2BP78356 416 aa31.65■■■□□ 2.66
VPS53-210ENST00000571456 ARHGEF5Q12774 1597 aa31.64■■■□□ 2.65
VPS53-210ENST00000571456 TOM1O60784 492 aa31.62■■■□□ 2.65
VPS53-210ENST00000571456 MBD5Q9P267 1494 aa31.62■■■□□ 2.65
VPS53-210ENST00000571456 PTPRKQ15262 1439 aa31.61■■■□□ 2.65
VPS53-210ENST00000571456 ZNF644Q9H582 1327 aaPredicted RBP31.6■■■□□ 2.65
VPS53-210ENST00000571456 PHF23Q9BUL5 403 aaPredicted RBP31.59■■■□□ 2.65
VPS53-210ENST00000571456 CCDC141Q6ZP82 1450 aa31.59■■■□□ 2.65
VPS53-210ENST00000571456 HNRNPMP52272 730 aaKnown RBP eCLIP31.58■■■□□ 2.65
VPS53-210ENST00000571456 CPS1P31327 1500 aa31.55■■■□□ 2.64
VPS53-210ENST00000571456 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.54■■■□□ 2.64
VPS53-210ENST00000571456 SPAG9O60271 1321 aaKnown RBP31.53■■■□□ 2.64
VPS53-210ENST00000571456 PPARGC1BQ86YN6 1023 aaKnown RBP31.53■■■□□ 2.64
VPS53-210ENST00000571456 RTEL1-TNFRSF6BF6WH68 1400 aa31.51■■■□□ 2.64
VPS53-210ENST00000571456 PLXNC1O60486 1568 aa31.51■■■□□ 2.63
VPS53-210ENST00000571456 A2ML1A8K2U0 1454 aa31.5■■■□□ 2.63
VPS53-210ENST00000571456 DNMT1P26358 1616 aaKnown RBP31.49■■■□□ 2.63
VPS53-210ENST00000571456 POLR1AO95602 1720 aaPredicted RBP31.49■■■□□ 2.63
VPS53-210ENST00000571456 TSPY4P0CV99 314 aa31.49■■■□□ 2.63
VPS53-210ENST00000571456 TSPY10P0CW01 314 aa31.49■■■□□ 2.63
VPS53-210ENST00000571456 INO80Q9ULG1 1556 aaPredicted RBP31.48■■■□□ 2.63
VPS53-210ENST00000571456 SHANK2Q9UPX8 1470 aa31.48■■■□□ 2.63
VPS53-210ENST00000571456 ATP7AQ04656 1500 aa31.48■■■□□ 2.63
VPS53-210ENST00000571456 RRBP1Q9P2E9 1410 aaKnown RBP31.47■■■□□ 2.63
VPS53-210ENST00000571456 MAST1Q9Y2H9 1570 aa31.47■■■□□ 2.63
VPS53-210ENST00000571456 A2MP01023 1474 aa31.46■■■□□ 2.63
VPS53-210ENST00000571456 GGT6Q6P531 493 aa31.46■■■□□ 2.63
VPS53-210ENST00000571456 CROCC2H7BZ55 1655 aa31.43■■■□□ 2.62
VPS53-210ENST00000571456 NEURL4Q96JN8 1562 aa31.43■■■□□ 2.62
VPS53-210ENST00000571456 FAM50AQ14320 339 aaKnown RBP31.41■■■□□ 2.62
VPS53-210ENST00000571456 DAPK1P53355 1430 aa31.41■■■□□ 2.62
VPS53-210ENST00000571456 ABCC5O15440 1437 aa31.39■■■□□ 2.62
VPS53-210ENST00000571456 ALKQ9UM73 1620 aa31.38■■■□□ 2.61
VPS53-210ENST00000571456 ADGBQ8N7X0 1667 aa31.38■■■□□ 2.61
VPS53-210ENST00000571456 VWDEQ8N2E2 1590 aa31.34■■■□□ 2.61
VPS53-210ENST00000571456 ANKLE2Q86XL3 938 aa31.29■■■□□ 2.6
VPS53-210ENST00000571456 TNRQ92752 1358 aa31.29■■■□□ 2.6
VPS53-210ENST00000571456 ADGRL2O95490 1459 aa31.27■■■□□ 2.6
VPS53-210ENST00000571456 ANKRD30AQ9BXX3 1397 aa31.26■■■□□ 2.59
VPS53-210ENST00000571456 SENP3Q9H4L4 574 aaPredicted RBP31.25■■■□□ 2.59
VPS53-210ENST00000571456 FBXO31Q5XUX0 539 aaPredicted RBP31.24■■■□□ 2.59
VPS53-210ENST00000571456 DHX29Q7Z478 1369 aaKnown RBP31.23■■■□□ 2.59
VPS53-210ENST00000571456 MED14O60244 1454 aa31.21■■■□□ 2.59
VPS53-210ENST00000571456 DEPDC5O75140 1603 aa31.21■■■□□ 2.59
VPS53-210ENST00000571456 ROCK1Q13464 1354 aa31.21■■■□□ 2.59
VPS53-210ENST00000571456 THEMISQ8N1K5 641 aaPredicted RBP31.21■■■□□ 2.59
VPS53-210ENST00000571456 NPHP4O75161 1426 aaPredicted RBP31.21■■■□□ 2.59
VPS53-210ENST00000571456 DUOX2Q9NRD8 1548 aa31.2■■■□□ 2.59
VPS53-210ENST00000571456 RGS17Q9UGC6 210 aaPredicted RBP31.2■■■□□ 2.59
VPS53-210ENST00000571456 PZPP20742 1482 aa31.19■■■□□ 2.58
VPS53-210ENST00000571456 STRCP1A6NGW2 1772 aa31.17■■■□□ 2.58
VPS53-210ENST00000571456 KIF15Q9NS87 1388 aa31.17■■■□□ 2.58
VPS53-210ENST00000571456 RNF17Q9BXT8 1623 aaKnown RBP31.16■■■□□ 2.58
VPS53-210ENST00000571456 IQGAP1P46940 1657 aa31.16■■■□□ 2.58
VPS53-210ENST00000571456 EIF2AK4Q9P2K8 1649 aaKnown RBP31.16■■■□□ 2.58
VPS53-210ENST00000571456 LRRC7Q96NW7 1537 aa31.15■■■□□ 2.58
VPS53-210ENST00000571456 UGGT1Q9NYU2 1555 aa31.14■■■□□ 2.58
VPS53-210ENST00000571456 ERBINQ96RT1 1412 aa31.14■■■□□ 2.58
VPS53-210ENST00000571456 NLRP1Q9C000 1473 aa31.14■■■□□ 2.57
VPS53-210ENST00000571456 KDM5DQ9BY66 1539 aa31.13■■■□□ 2.57
VPS53-210ENST00000571456 FAM135AQ9P2D6 1515 aa31.13■■■□□ 2.57
VPS53-210ENST00000571456 CHIC2Q9UKJ5 165 aa31.12■■■□□ 2.57
VPS53-210ENST00000571456 SYNMO15061 1565 aa31.12■■■□□ 2.57
VPS53-210ENST00000571456 KIF3BO15066 747 aa31.08■■■□□ 2.57
VPS53-210ENST00000571456 RRP7BPQ9NSQ0 103 aa31.08■■■□□ 2.57
VPS53-210ENST00000571456 ITGAEP38570 1179 aa31.07■■■□□ 2.56
VPS53-210ENST00000571456 WASHC2CQ9Y4E1 1318 aa31.06■■■□□ 2.56
VPS53-210ENST00000571456 ANKRD50Q9ULJ7 1429 aa31.01■■■□□ 2.55
VPS53-210ENST00000571456 POTEAQ6S8J7 498 aa30.98■■■□□ 2.55
VPS53-210ENST00000571456 GCC2Q8IWJ2 1684 aa30.97■■■□□ 2.55
VPS53-210ENST00000571456 HFM1A2PYH4 1435 aa30.96■■■□□ 2.55
VPS53-210ENST00000571456 ZC3H13Q5T200 1668 aaKnown RBP30.95■■■□□ 2.55
VPS53-210ENST00000571456 XIRP1Q702N8 1843 aaKnown RBP30.92■■■□□ 2.54
VPS53-210ENST00000571456 PRDM15P57071 1507 aaPredicted RBP30.91■■■□□ 2.54
VPS53-210ENST00000571456 NAIPQ13075 1403 aa30.9■■■□□ 2.54
VPS53-210ENST00000571456 ACIN1Q9UKV3 1341 aaKnown RBP30.9■■■□□ 2.54
VPS53-210ENST00000571456 KANK1Q14678 1352 aa30.88■■■□□ 2.53
VPS53-210ENST00000571456 MROH1Q8NDA8 1641 aa30.87■■■□□ 2.53
VPS53-210ENST00000571456 FAM135BQ49AJ0 1406 aa30.86■■■□□ 2.53
VPS53-210ENST00000571456 UNC13BO14795 1591 aa30.84■■■□□ 2.53
VPS53-210ENST00000571456 SETD1AO15047 1707 aaKnown RBP30.83■■■□□ 2.53
VPS53-210ENST00000571456 SCAF11Q99590 1463 aaKnown RBP30.82■■■□□ 2.53
VPS53-210ENST00000571456 UBR1Q8IWV7 1749 aa30.82■■■□□ 2.52
VPS53-210ENST00000571456 CFAP65Q6ZU64 1925 aaKnown RBP30.81■■■□□ 2.52
VPS53-210ENST00000571456 ERVK-7P63135 1459 aa30.79■■■□□ 2.52
VPS53-210ENST00000571456 ABCC3O15438 1527 aa30.78■■■□□ 2.52
VPS53-210ENST00000571456 LMTK2Q8IWU2 1503 aa30.78■■■□□ 2.52
VPS53-210ENST00000571456 TRIM26Q12899 539 aaPredicted RBP30.77■■■□□ 2.52
VPS53-210ENST00000571456 SETD5Q9C0A6 1442 aa30.74■■■□□ 2.51
VPS53-210ENST00000571456 LTKP29376 864 aa30.74■■■□□ 2.51
VPS53-210ENST00000571456 TXNDC2Q86VQ3 553 aa30.74■■■□□ 2.51
VPS53-210ENST00000571456 ROBO1Q9Y6N7 1651 aa30.74■■■□□ 2.51
VPS53-210ENST00000571456 CEP152O94986 1710 aa30.73■■■□□ 2.51
VPS53-210ENST00000571456 ARHGAP23Q9P227 1491 aa30.72■■■□□ 2.51
VPS53-210ENST00000571456 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.72■■■□□ 2.51
VPS53-210ENST00000571456 IQGAP3Q86VI3 1631 aa30.72■■■□□ 2.51
VPS53-210ENST00000571456 SLIT1O75093 1534 aa30.72■■■□□ 2.51
VPS53-210ENST00000571456 ARHGAP31Q2M1Z3 1444 aa30.71■■■□□ 2.51
VPS53-210ENST00000571456 HRCP23327 699 aa30.68■■■□□ 2.5
VPS53-210ENST00000571456 TET3O43151 1660 aa30.68■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms