RNA–Protein interactions for RNA: ENST00000569394.5

GTF3C1-210, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-210ENST00000569394 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.84□□□□□ -0.19
GTF3C1-210ENST00000569394 TCOF1Q13428 1488 aaKnown RBP13.84□□□□□ -0.19
GTF3C1-210ENST00000569394 CROCC2H7BZ55 1655 aa13.84□□□□□ -0.19
GTF3C1-210ENST00000569394 DNMT1P26358 1616 aaKnown RBP13.83□□□□□ -0.2
GTF3C1-210ENST00000569394 C3P01024 1663 aa13.83□□□□□ -0.2
GTF3C1-210ENST00000569394 MAST1Q9Y2H9 1570 aa13.82□□□□□ -0.2
GTF3C1-210ENST00000569394 NPM3O75607 178 aaKnown RBP13.81□□□□□ -0.2
GTF3C1-210ENST00000569394 KIF15Q9NS87 1388 aa13.81□□□□□ -0.2
GTF3C1-210ENST00000569394 WASHC2CQ9Y4E1 1318 aa13.8□□□□□ -0.2
GTF3C1-210ENST00000569394 ZMYM3Q14202 1370 aa13.8□□□□□ -0.2
GTF3C1-210ENST00000569394 ANKRD30AQ9BXX3 1397 aa13.78□□□□□ -0.2
GTF3C1-210ENST00000569394 PTPRKQ15262 1439 aa13.77□□□□□ -0.21
GTF3C1-210ENST00000569394 FBXO31Q5XUX0 539 aaPredicted RBP13.77□□□□□ -0.21
GTF3C1-210ENST00000569394 LMTK3Q96Q04 1460 aa13.77□□□□□ -0.21
GTF3C1-210ENST00000569394 CNTLNQ9NXG0 1405 aa13.77□□□□□ -0.21
GTF3C1-210ENST00000569394 DUOX2Q9NRD8 1548 aa13.76□□□□□ -0.21
GTF3C1-210ENST00000569394 SHANK2Q9UPX8 1470 aa13.76□□□□□ -0.21
GTF3C1-210ENST00000569394 CFAP65Q6ZU64 1925 aaKnown RBP13.76□□□□□ -0.21
GTF3C1-210ENST00000569394 CEP152O94986 1710 aa13.74□□□□□ -0.21
GTF3C1-210ENST00000569394 PREX1Q8TCU6 1659 aa13.74□□□□□ -0.21
GTF3C1-210ENST00000569394 NCOA1Q15788 1441 aa13.73□□□□□ -0.21
GTF3C1-210ENST00000569394 UHRF1BP1Q6BDS2 1440 aa13.73□□□□□ -0.21
GTF3C1-210ENST00000569394 MROH2AA6NES4 1674 aa13.73□□□□□ -0.21
GTF3C1-210ENST00000569394 KDM5DQ9BY66 1539 aa13.72□□□□□ -0.21
GTF3C1-210ENST00000569394 EIF2AK4Q9P2K8 1649 aaKnown RBP13.71□□□□□ -0.22
GTF3C1-210ENST00000569394 RNF17Q9BXT8 1623 aaKnown RBP13.7□□□□□ -0.22
GTF3C1-210ENST00000569394 ERBINQ96RT1 1412 aa13.7□□□□□ -0.22
GTF3C1-210ENST00000569394 SETD1BQ9UPS6 1966 aaKnown RBP13.69□□□□□ -0.22
GTF3C1-210ENST00000569394 MROH1Q8NDA8 1641 aa13.69□□□□□ -0.22
GTF3C1-210ENST00000569394 ABCC3O15438 1527 aa13.69□□□□□ -0.22
GTF3C1-210ENST00000569394 ADGRL2O95490 1459 aa13.68□□□□□ -0.22
GTF3C1-210ENST00000569394 ANKRD50Q9ULJ7 1429 aa13.68□□□□□ -0.22
GTF3C1-210ENST00000569394 KANK1Q14678 1352 aa13.68□□□□□ -0.22
GTF3C1-210ENST00000569394 RRBP1Q9P2E9 1410 aaKnown RBP13.67□□□□□ -0.22
GTF3C1-210ENST00000569394 CAMSAP1Q5T5Y3 1602 aa13.67□□□□□ -0.22
GTF3C1-210ENST00000569394 MYO3AQ8NEV4 1616 aa13.66□□□□□ -0.22
GTF3C1-210ENST00000569394 TNRQ92752 1358 aa13.66□□□□□ -0.22
GTF3C1-210ENST00000569394 NPATQ14207 1427 aa13.65□□□□□ -0.22
GTF3C1-210ENST00000569394 PZPP20742 1482 aa13.65□□□□□ -0.22
GTF3C1-210ENST00000569394 NCKAP5LQ9HCH0 1330 aa13.64□□□□□ -0.23
GTF3C1-210ENST00000569394 ZC3H13Q5T200 1668 aaKnown RBP13.64□□□□□ -0.23
GTF3C1-210ENST00000569394 PRDM15P57071 1507 aaPredicted RBP13.63□□□□□ -0.23
GTF3C1-210ENST00000569394 CEP170BQ9Y4F5 1589 aaPredicted RBP13.62□□□□□ -0.23
GTF3C1-210ENST00000569394 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.62□□□□□ -0.23
GTF3C1-210ENST00000569394 DEPDC5O75140 1603 aa13.62□□□□□ -0.23
GTF3C1-210ENST00000569394 ROCK1Q13464 1354 aa13.61□□□□□ -0.23
GTF3C1-210ENST00000569394 STRCQ7RTU9 1775 aa13.61□□□□□ -0.23
GTF3C1-210ENST00000569394 CNKSR2Q8WXI2 1034 aa13.61□□□□□ -0.23
GTF3C1-210ENST00000569394 TRIM52Q96A61 297 aa13.61□□□□□ -0.23
GTF3C1-210ENST00000569394 ERVK-7P63135 1459 aa13.6□□□□□ -0.23
GTF3C1-210ENST00000569394 NUP155O75694 1391 aa13.59□□□□□ -0.23
GTF3C1-210ENST00000569394 CERKQ8TCT0 537 aa13.59□□□□□ -0.23
GTF3C1-210ENST00000569394 STAG3Q9UJ98 1225 aa13.59□□□□□ -0.23
GTF3C1-210ENST00000569394 FAM135AQ9P2D6 1515 aa13.59□□□□□ -0.23
GTF3C1-210ENST00000569394 A2ML1A8K2U0 1454 aa13.58□□□□□ -0.24
GTF3C1-210ENST00000569394 ZNF142P52746 1687 aaPredicted RBP13.57□□□□□ -0.24
GTF3C1-210ENST00000569394 CHGAP10645 457 aaKnown RBP13.57□□□□□ -0.24
GTF3C1-210ENST00000569394 UNC13BO14795 1591 aa13.56□□□□□ -0.24
GTF3C1-210ENST00000569394 SPATA31D1Q6ZQQ2 1576 aa13.56□□□□□ -0.24
GTF3C1-210ENST00000569394 UGGT1Q9NYU2 1555 aa13.56□□□□□ -0.24
GTF3C1-210ENST00000569394 NAIPQ13075 1403 aa13.56□□□□□ -0.24
GTF3C1-210ENST00000569394 VWDEQ8N2E2 1590 aa13.55□□□□□ -0.24
GTF3C1-210ENST00000569394 THEMISQ8N1K5 641 aaPredicted RBP13.55□□□□□ -0.24
GTF3C1-210ENST00000569394 EFCAB6Q5THR3 1501 aa13.54□□□□□ -0.24
GTF3C1-210ENST00000569394 MSH5O43196 834 aa13.54□□□□□ -0.24
GTF3C1-210ENST00000569394 DMRT2Q9Y5R5 561 aa13.54□□□□□ -0.24
GTF3C1-210ENST00000569394 IDI1Q13907 227 aa13.53□□□□□ -0.24
GTF3C1-210ENST00000569394 NLRP1Q9C000 1473 aa13.53□□□□□ -0.24
GTF3C1-210ENST00000569394 LMTK2Q8IWU2 1503 aa13.53□□□□□ -0.24
GTF3C1-210ENST00000569394 PIK3C2BO00750 1634 aa13.53□□□□□ -0.24
GTF3C1-210ENST00000569394 TET3O43151 1660 aa13.53□□□□□ -0.24
GTF3C1-210ENST00000569394 GCC2Q8IWJ2 1684 aa13.53□□□□□ -0.24
GTF3C1-210ENST00000569394 ANKLE2Q86XL3 938 aa13.52□□□□□ -0.25
GTF3C1-210ENST00000569394 SCAF1Q9H7N4 1312 aaKnown RBP13.52□□□□□ -0.25
GTF3C1-210ENST00000569394 ARHGAP31Q2M1Z3 1444 aa13.52□□□□□ -0.25
GTF3C1-210ENST00000569394 E9PCH4 1651 aa13.52□□□□□ -0.25
GTF3C1-210ENST00000569394 SYNMO15061 1565 aa13.51□□□□□ -0.25
GTF3C1-210ENST00000569394 NUTM2DQ5VT03 806 aaPredicted RBP13.51□□□□□ -0.25
GTF3C1-210ENST00000569394 UBR1Q8IWV7 1749 aa13.5□□□□□ -0.25
GTF3C1-210ENST00000569394 IQGAP3Q86VI3 1631 aa13.5□□□□□ -0.25
GTF3C1-210ENST00000569394 PKD2Q13563 968 aa13.5□□□□□ -0.25
GTF3C1-210ENST00000569394 BCANQ96GW7 911 aa13.5□□□□□ -0.25
GTF3C1-210ENST00000569394 ZNF335Q9H4Z2 1342 aaPredicted RBP13.49□□□□□ -0.25
GTF3C1-210ENST00000569394 ZBTB22O15209 634 aa13.49□□□□□ -0.25
GTF3C1-210ENST00000569394 TXNDC2Q86VQ3 553 aa13.49□□□□□ -0.25
GTF3C1-210ENST00000569394 POLR1AO95602 1720 aaPredicted RBP13.49□□□□□ -0.25
GTF3C1-210ENST00000569394 HFM1A2PYH4 1435 aa13.48□□□□□ -0.25
GTF3C1-210ENST00000569394 MYO5BQ9ULV0 1848 aa13.48□□□□□ -0.25
GTF3C1-210ENST00000569394 PLA2R1Q13018 1463 aa13.48□□□□□ -0.25
GTF3C1-210ENST00000569394 NOS1P29475 1434 aa13.47□□□□□ -0.25
GTF3C1-210ENST00000569394 LTKP29376 864 aa13.47□□□□□ -0.25
GTF3C1-210ENST00000569394 PTPRTO14522 1441 aa13.47□□□□□ -0.25
GTF3C1-210ENST00000569394 DISP3Q9P2K9 1392 aa13.45□□□□□ -0.26
GTF3C1-210ENST00000569394 NEURL4Q96JN8 1562 aa13.45□□□□□ -0.26
GTF3C1-210ENST00000569394 SOCS7O14512 581 aa13.45□□□□□ -0.26
GTF3C1-210ENST00000569394 EID1Q9Y6B2 187 aa13.45□□□□□ -0.26
GTF3C1-210ENST00000569394 NPHP4O75161 1426 aaPredicted RBP13.45□□□□□ -0.26
GTF3C1-210ENST00000569394 RPRD2Q5VT52 1461 aaKnown RBP13.44□□□□□ -0.26
GTF3C1-210ENST00000569394 MAPK8IP2Q13387 824 aaPredicted RBP13.44□□□□□ -0.26
GTF3C1-210ENST00000569394 SLC52A1Q9NWF4 448 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms