RNA–Protein interactions for RNA: ENST00000569225.5

CHD9-219, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 1,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-219ENST00000569225 FAM135AQ9P2D6 1515 aa13.66□□□□□ -0.22
CHD9-219ENST00000569225 TRIM26Q12899 539 aaPredicted RBP13.66□□□□□ -0.22
CHD9-219ENST00000569225 AEBP2Q6ZN18 517 aaPredicted RBP13.66□□□□□ -0.22
CHD9-219ENST00000569225 ADAMTSL3P82987 1691 aa13.66□□□□□ -0.22
CHD9-219ENST00000569225 WASHC2CQ9Y4E1 1318 aa13.66□□□□□ -0.22
CHD9-219ENST00000569225 RNF17Q9BXT8 1623 aaKnown RBP13.65□□□□□ -0.22
CHD9-219ENST00000569225 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.65□□□□□ -0.22
CHD9-219ENST00000569225 MADDQ8WXG6 1647 aa13.64□□□□□ -0.23
CHD9-219ENST00000569225 ACIN1Q9UKV3 1341 aaKnown RBP13.64□□□□□ -0.23
CHD9-219ENST00000569225 KDM5DQ9BY66 1539 aa13.63□□□□□ -0.23
CHD9-219ENST00000569225 PRDM15P57071 1507 aaPredicted RBP13.63□□□□□ -0.23
CHD9-219ENST00000569225 GCC2Q8IWJ2 1684 aa13.62□□□□□ -0.23
CHD9-219ENST00000569225 SETD5Q9C0A6 1442 aa13.62□□□□□ -0.23
CHD9-219ENST00000569225 PTPRMP28827 1452 aa13.61□□□□□ -0.23
CHD9-219ENST00000569225 FER1L4A9Z1Z3 1794 aa13.61□□□□□ -0.23
CHD9-219ENST00000569225 DEPDC5O75140 1603 aa13.61□□□□□ -0.23
CHD9-219ENST00000569225 MROH1Q8NDA8 1641 aa13.6□□□□□ -0.23
CHD9-219ENST00000569225 ABCC3O15438 1527 aa13.6□□□□□ -0.23
CHD9-219ENST00000569225 NUP155O75694 1391 aa13.59□□□□□ -0.23
CHD9-219ENST00000569225 ZMYM3Q14202 1370 aa13.59□□□□□ -0.23
CHD9-219ENST00000569225 RIMS1Q86UR5 1692 aaKnown RBP13.59□□□□□ -0.23
CHD9-219ENST00000569225 UNC13BO14795 1591 aa13.59□□□□□ -0.23
CHD9-219ENST00000569225 TRIM52Q96A61 297 aa13.58□□□□□ -0.24
CHD9-219ENST00000569225 ZC3H13Q5T200 1668 aaKnown RBP13.58□□□□□ -0.24
CHD9-219ENST00000569225 PLPPR3Q6T4P5 718 aa13.57□□□□□ -0.24
CHD9-219ENST00000569225 LMTK2Q8IWU2 1503 aa13.57□□□□□ -0.24
CHD9-219ENST00000569225 VWDEQ8N2E2 1590 aa13.57□□□□□ -0.24
CHD9-219ENST00000569225 MROH2AA6NES4 1674 aa13.57□□□□□ -0.24
CHD9-219ENST00000569225 CLTCQ00610 1675 aaKnown RBP13.56□□□□□ -0.24
CHD9-219ENST00000569225 RAB3GAP2Q9H2M9 1393 aa13.56□□□□□ -0.24
CHD9-219ENST00000569225 HRCP23327 699 aa13.55□□□□□ -0.24
CHD9-219ENST00000569225 CEBPAP49715 358 aaPredicted RBP13.55□□□□□ -0.24
CHD9-219ENST00000569225 ARHGAP31Q2M1Z3 1444 aa13.55□□□□□ -0.24
CHD9-219ENST00000569225 PZPP20742 1482 aa13.55□□□□□ -0.24
CHD9-219ENST00000569225 NPATQ14207 1427 aa13.54□□□□□ -0.24
CHD9-219ENST00000569225 IQGAP3Q86VI3 1631 aa13.53□□□□□ -0.24
CHD9-219ENST00000569225 EFCAB6Q5THR3 1501 aa13.52□□□□□ -0.25
CHD9-219ENST00000569225 CAMSAP1Q5T5Y3 1602 aa13.51□□□□□ -0.25
CHD9-219ENST00000569225 RPRD2Q5VT52 1461 aaKnown RBP13.51□□□□□ -0.25
CHD9-219ENST00000569225 SLC4A1APQ9BWU0 796 aaKnown RBP13.51□□□□□ -0.25
CHD9-219ENST00000569225 C3P01024 1663 aa13.5□□□□□ -0.25
CHD9-219ENST00000569225 CEP152O94986 1710 aa13.5□□□□□ -0.25
CHD9-219ENST00000569225 TET3O43151 1660 aa13.5□□□□□ -0.25
CHD9-219ENST00000569225 FBXO31Q5XUX0 539 aaPredicted RBP13.5□□□□□ -0.25
CHD9-219ENST00000569225 TNRQ92752 1358 aa13.49□□□□□ -0.25
CHD9-219ENST00000569225 ERVK-7P63135 1459 aa13.48□□□□□ -0.25
CHD9-219ENST00000569225 MPHOSPH9Q99550 1183 aa13.48□□□□□ -0.25
CHD9-219ENST00000569225 PKD2Q13563 968 aa13.47□□□□□ -0.25
CHD9-219ENST00000569225 UHRF1BP1Q6BDS2 1440 aa13.47□□□□□ -0.25
CHD9-219ENST00000569225 SPATA31D1Q6ZQQ2 1576 aa13.46□□□□□ -0.25
CHD9-219ENST00000569225 PCGF6Q9BYE7 350 aa13.46□□□□□ -0.25
CHD9-219ENST00000569225 NLRP1Q9C000 1473 aa13.45□□□□□ -0.26
CHD9-219ENST00000569225 NOS1P29475 1434 aa13.45□□□□□ -0.26
CHD9-219ENST00000569225 SLC52A1Q9NWF4 448 aa13.44□□□□□ -0.26
CHD9-219ENST00000569225 PREX1Q8TCU6 1659 aa13.42□□□□□ -0.26
CHD9-219ENST00000569225 E9PCH4 1651 aa13.42□□□□□ -0.26
CHD9-219ENST00000569225 PTPRTO14522 1441 aa13.42□□□□□ -0.26
CHD9-219ENST00000569225 A2ML1A8K2U0 1454 aa13.41□□□□□ -0.26
CHD9-219ENST00000569225 MYO3AQ8NEV4 1616 aa13.4□□□□□ -0.26
CHD9-219ENST00000569225 LMTK3Q96Q04 1460 aa13.4□□□□□ -0.26
CHD9-219ENST00000569225 SETD1BQ9UPS6 1966 aaKnown RBP13.4□□□□□ -0.26
CHD9-219ENST00000569225 STAG3Q9UJ98 1225 aa13.4□□□□□ -0.26
CHD9-219ENST00000569225 IDI1Q13907 227 aa13.39□□□□□ -0.27
CHD9-219ENST00000569225 SYNMO15061 1565 aa13.39□□□□□ -0.27
CHD9-219ENST00000569225 CEP170BQ9Y4F5 1589 aaPredicted RBP13.39□□□□□ -0.27
CHD9-219ENST00000569225 FOXD1Q16676 465 aa13.38□□□□□ -0.27
CHD9-219ENST00000569225 THEMISQ8N1K5 641 aaPredicted RBP13.38□□□□□ -0.27
CHD9-219ENST00000569225 TRPM2O94759 1503 aa13.38□□□□□ -0.27
CHD9-219ENST00000569225 UGGT1Q9NYU2 1555 aa13.37□□□□□ -0.27
CHD9-219ENST00000569225 CCDC144AA2RUR9 1427 aa13.36□□□□□ -0.27
CHD9-219ENST00000569225 PLA2R1Q13018 1463 aa13.36□□□□□ -0.27
CHD9-219ENST00000569225 ZNF142P52746 1687 aaPredicted RBP13.36□□□□□ -0.27
CHD9-219ENST00000569225 SPHKAPQ2M3C7 1700 aa13.35□□□□□ -0.27
CHD9-219ENST00000569225 CHGAP10645 457 aaKnown RBP13.35□□□□□ -0.27
CHD9-219ENST00000569225 HSPA2P54652 639 aa13.35□□□□□ -0.27
CHD9-219ENST00000569225 PIK3C2BO00750 1634 aa13.33□□□□□ -0.28
CHD9-219ENST00000569225 ADGRB3O60242 1522 aa13.33□□□□□ -0.28
CHD9-219ENST00000569225 ANKRD30BQ9BXX2 1392 aa13.33□□□□□ -0.28
CHD9-219ENST00000569225 CFAP65Q6ZU64 1925 aaKnown RBP13.32□□□□□ -0.28
CHD9-219ENST00000569225 DHX57Q6P158 1386 aaKnown RBP13.32□□□□□ -0.28
CHD9-219ENST00000569225 HDGFP51858 240 aaKnown RBP13.31□□□□□ -0.28
CHD9-219ENST00000569225 EID1Q9Y6B2 187 aa13.31□□□□□ -0.28
CHD9-219ENST00000569225 KDM5AP29375 1690 aaKnown RBP13.31□□□□□ -0.28
CHD9-219ENST00000569225 ANKLE2Q86XL3 938 aa13.31□□□□□ -0.28
CHD9-219ENST00000569225 TMEM2Q9UHN6 1383 aa13.3□□□□□ -0.28
CHD9-219ENST00000569225 CLTCL1P53675 1640 aa13.3□□□□□ -0.28
CHD9-219ENST00000569225 ZNF326Q5BKZ1 582 aaKnown RBP13.29□□□□□ -0.28
CHD9-219ENST00000569225 UBR1Q8IWV7 1749 aa13.29□□□□□ -0.28
CHD9-219ENST00000569225 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.29□□□□□ -0.28
CHD9-219ENST00000569225 DMRT2Q9Y5R5 561 aa13.29□□□□□ -0.28
CHD9-219ENST00000569225 SLIT1O75093 1534 aa13.28□□□□□ -0.28
CHD9-219ENST00000569225 TMEM131LA2VDJ0 1609 aa13.28□□□□□ -0.28
CHD9-219ENST00000569225 ARHGAP23Q9P227 1491 aa13.28□□□□□ -0.28
CHD9-219ENST00000569225 TXNDC2Q86VQ3 553 aa13.27□□□□□ -0.28
CHD9-219ENST00000569225 RPGRIP1LQ68CZ1 1315 aa13.27□□□□□ -0.29
CHD9-219ENST00000569225 PPP1R15AO75807 674 aaPredicted RBP13.27□□□□□ -0.29
CHD9-219ENST00000569225 RIMS2Q9UQ26 1411 aa13.26□□□□□ -0.29
CHD9-219ENST00000569225 SCAF11Q99590 1463 aaKnown RBP13.26□□□□□ -0.29
CHD9-219ENST00000569225 NCKAP5LQ9HCH0 1330 aa13.26□□□□□ -0.29
CHD9-219ENST00000569225 SPATA31E1Q6ZUB1 1445 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms