RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 KDM5DQ9BY66 1539 aa29.51■■■□□ 2.32
CLN3-218ENST00000565688 PLA2R1Q13018 1463 aa29.51■■■□□ 2.31
CLN3-218ENST00000565688 MYOM3Q5VTT5 1437 aa29.51■■■□□ 2.31
CLN3-218ENST00000565688 WASHC2CQ9Y4E1 1318 aa29.49■■■□□ 2.31
CLN3-218ENST00000565688 MAST1Q9Y2H9 1570 aa29.48■■■□□ 2.31
CLN3-218ENST00000565688 PKD2Q13563 968 aa29.48■■■□□ 2.31
CLN3-218ENST00000565688 NCKAP5LQ9HCH0 1330 aa29.46■■■□□ 2.31
CLN3-218ENST00000565688 APLP2Q06481 763 aa29.46■■■□□ 2.31
CLN3-218ENST00000565688 A2ML1A8K2U0 1454 aa29.46■■■□□ 2.31
CLN3-218ENST00000565688 PZPP20742 1482 aa29.46■■■□□ 2.31
CLN3-218ENST00000565688 LTBP4Q8N2S1 1624 aa29.44■■■□□ 2.3
CLN3-218ENST00000565688 TCOF1Q13428 1488 aaKnown RBP29.43■■■□□ 2.3
CLN3-218ENST00000565688 TNRQ92752 1358 aa29.42■■■□□ 2.3
CLN3-218ENST00000565688 FBXO31Q5XUX0 539 aaPredicted RBP29.4■■■□□ 2.3
CLN3-218ENST00000565688 IQSEC2Q5JU85 1478 aa29.39■■■□□ 2.3
CLN3-218ENST00000565688 DNMT1P26358 1616 aaKnown RBP29.38■■■□□ 2.29
CLN3-218ENST00000565688 RNF17Q9BXT8 1623 aaKnown RBP29.38■■■□□ 2.29
CLN3-218ENST00000565688 EIF2AK4Q9P2K8 1649 aaKnown RBP29.37■■■□□ 2.29
CLN3-218ENST00000565688 ZC3H13Q5T200 1668 aaKnown RBP29.32■■■□□ 2.28
CLN3-218ENST00000565688 DUOX2Q9NRD8 1548 aa29.32■■■□□ 2.28
CLN3-218ENST00000565688 NLRP1Q9C000 1473 aa29.32■■■□□ 2.28
CLN3-218ENST00000565688 ABCC3O15438 1527 aa29.3■■■□□ 2.28
CLN3-218ENST00000565688 SHANK2Q9UPX8 1470 aa29.3■■■□□ 2.28
CLN3-218ENST00000565688 ZNF335Q9H4Z2 1342 aaPredicted RBP29.3■■■□□ 2.28
CLN3-218ENST00000565688 PTPN23Q9H3S7 1636 aa29.3■■■□□ 2.28
CLN3-218ENST00000565688 THEMISQ8N1K5 641 aaPredicted RBP29.28■■■□□ 2.28
CLN3-218ENST00000565688 ABCC5O15440 1437 aa29.27■■■□□ 2.28
CLN3-218ENST00000565688 KIF15Q9NS87 1388 aa29.26■■■□□ 2.28
CLN3-218ENST00000565688 CROCC2H7BZ55 1655 aa29.25■■■□□ 2.27
CLN3-218ENST00000565688 MROH1Q8NDA8 1641 aa29.25■■■□□ 2.27
CLN3-218ENST00000565688 FGD6Q6ZV73 1430 aa29.25■■■□□ 2.27
CLN3-218ENST00000565688 POLR1AO95602 1720 aaPredicted RBP29.24■■■□□ 2.27
CLN3-218ENST00000565688 UGGT1Q9NYU2 1555 aa29.24■■■□□ 2.27
CLN3-218ENST00000565688 ERBINQ96RT1 1412 aa29.23■■■□□ 2.27
CLN3-218ENST00000565688 ANKLE2Q86XL3 938 aa29.23■■■□□ 2.27
CLN3-218ENST00000565688 SPATA31D1Q6ZQQ2 1576 aa29.22■■■□□ 2.27
CLN3-218ENST00000565688 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.22■■■□□ 2.27
CLN3-218ENST00000565688 DAPK1P53355 1430 aa29.21■■■□□ 2.27
CLN3-218ENST00000565688 RRP7BPQ9NSQ0 103 aa29.2■■■□□ 2.26
CLN3-218ENST00000565688 NEURL4Q96JN8 1562 aa29.2■■■□□ 2.26
CLN3-218ENST00000565688 ERVK-7P63135 1459 aa29.19■■■□□ 2.26
CLN3-218ENST00000565688 PRDM15P57071 1507 aaPredicted RBP29.17■■■□□ 2.26
CLN3-218ENST00000565688 CEP152O94986 1710 aa29.16■■■□□ 2.26
CLN3-218ENST00000565688 DEPDC5O75140 1603 aa29.15■■■□□ 2.26
CLN3-218ENST00000565688 ANKRD30AQ9BXX3 1397 aa29.14■■■□□ 2.26
CLN3-218ENST00000565688 ARHGAP31Q2M1Z3 1444 aa29.13■■■□□ 2.25
CLN3-218ENST00000565688 MED14O60244 1454 aa29.13■■■□□ 2.25
CLN3-218ENST00000565688 UBAP1LF5GYI3 381 aa29.12■■■□□ 2.25
CLN3-218ENST00000565688 CPS1P31327 1500 aa29.11■■■□□ 2.25
CLN3-218ENST00000565688 KANK1Q14678 1352 aa29.11■■■□□ 2.25
CLN3-218ENST00000565688 NPHP4O75161 1426 aaPredicted RBP29.11■■■□□ 2.25
CLN3-218ENST00000565688 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.08■■■□□ 2.25
CLN3-218ENST00000565688 CHIC2Q9UKJ5 165 aa29.08■■■□□ 2.25
CLN3-218ENST00000565688 CFAP65Q6ZU64 1925 aaKnown RBP29.04■■■□□ 2.24
CLN3-218ENST00000565688 IQGAP1P46940 1657 aa29.03■■■□□ 2.24
CLN3-218ENST00000565688 VWDEQ8N2E2 1590 aa29.03■■■□□ 2.24
CLN3-218ENST00000565688 UBR1Q8IWV7 1749 aa29.03■■■□□ 2.24
CLN3-218ENST00000565688 ADGRL2O95490 1459 aa29.02■■■□□ 2.24
CLN3-218ENST00000565688 FAM50AQ14320 339 aaKnown RBP29.01■■■□□ 2.23
CLN3-218ENST00000565688 DISP3Q9P2K9 1392 aa29.01■■■□□ 2.23
CLN3-218ENST00000565688 LMTK2Q8IWU2 1503 aa29■■■□□ 2.23
CLN3-218ENST00000565688 SCAF11Q99590 1463 aaKnown RBP28.97■■■□□ 2.23
CLN3-218ENST00000565688 SLIT1O75093 1534 aa28.96■■■□□ 2.23
CLN3-218ENST00000565688 TOM1O60784 492 aa28.96■■■□□ 2.23
CLN3-218ENST00000565688 ARHGAP23Q9P227 1491 aa28.95■■■□□ 2.22
CLN3-218ENST00000565688 EID1Q9Y6B2 187 aa28.93■■■□□ 2.22
CLN3-218ENST00000565688 TXNDC2Q86VQ3 553 aa28.92■■■□□ 2.22
CLN3-218ENST00000565688 STAG3Q9UJ98 1225 aa28.91■■■□□ 2.22
CLN3-218ENST00000565688 ANKRD50Q9ULJ7 1429 aa28.91■■■□□ 2.22
CLN3-218ENST00000565688 PIK3C2BO00750 1634 aa28.91■■■□□ 2.22
CLN3-218ENST00000565688 LTKP29376 864 aa28.9■■■□□ 2.22
CLN3-218ENST00000565688 EFCAB6Q5THR3 1501 aa28.89■■■□□ 2.22
CLN3-218ENST00000565688 KDM5AP29375 1690 aaKnown RBP28.89■■■□□ 2.21
CLN3-218ENST00000565688 SCAF1Q9H7N4 1312 aaKnown RBP28.88■■■□□ 2.21
CLN3-218ENST00000565688 TMEM2Q9UHN6 1383 aa28.88■■■□□ 2.21
CLN3-218ENST00000565688 PIP4K2BP78356 416 aa28.86■■■□□ 2.21
CLN3-218ENST00000565688 IDI1Q13907 227 aa28.86■■■□□ 2.21
CLN3-218ENST00000565688 NOS1P29475 1434 aa28.86■■■□□ 2.21
CLN3-218ENST00000565688 SYNMO15061 1565 aa28.85■■■□□ 2.21
CLN3-218ENST00000565688 LRRC7Q96NW7 1537 aa28.84■■■□□ 2.21
CLN3-218ENST00000565688 RPRD2Q5VT52 1461 aaKnown RBP28.83■■■□□ 2.21
CLN3-218ENST00000565688 STRCP1A6NGW2 1772 aa28.83■■■□□ 2.21
CLN3-218ENST00000565688 SLC52A1Q9NWF4 448 aa28.82■■■□□ 2.2
CLN3-218ENST00000565688 ROCK1Q13464 1354 aa28.79■■■□□ 2.2
CLN3-218ENST00000565688 ILDR2Q71H61 639 aa28.79■■■□□ 2.2
CLN3-218ENST00000565688 HSPA1LP34931 641 aa28.78■■■□□ 2.2
CLN3-218ENST00000565688 ADGRB3O60242 1522 aa28.77■■■□□ 2.2
CLN3-218ENST00000565688 TET3O43151 1660 aa28.76■■■□□ 2.19
CLN3-218ENST00000565688 ALKQ9UM73 1620 aa28.75■■■□□ 2.19
CLN3-218ENST00000565688 UNC13BO14795 1591 aa28.74■■■□□ 2.19
CLN3-218ENST00000565688 GCC2Q8IWJ2 1684 aa28.7■■■□□ 2.18
CLN3-218ENST00000565688 SOCS7O14512 581 aa28.66■■■□□ 2.18
CLN3-218ENST00000565688 KCNA6P17658 529 aa28.65■■■□□ 2.18
CLN3-218ENST00000565688 HDGFP51858 240 aaKnown RBP28.65■■■□□ 2.18
CLN3-218ENST00000565688 SLC26A8Q96RN1 970 aa28.64■■■□□ 2.18
CLN3-218ENST00000565688 ITGAEP38570 1179 aa28.63■■■□□ 2.17
CLN3-218ENST00000565688 IQGAP3Q86VI3 1631 aa28.62■■■□□ 2.17
CLN3-218ENST00000565688 ZFYVE9O95405 1425 aa28.61■■■□□ 2.17
CLN3-218ENST00000565688 PPARGC1BQ86YN6 1023 aaKnown RBP28.61■■■□□ 2.17
CLN3-218ENST00000565688 BCANQ96GW7 911 aa28.61■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms