RNA–Protein interactions for RNA: ENST00000563790.5

HDGFL3-204, Transcript of HDGF like 3, humanhuman

TSL 3

Gene HDGFL3, Length 934 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-204ENST00000563790 RGS12O14924 1447 aa19.22■□□□□ 0.67
HDGFL3-204ENST00000563790 P3H3Q8IVL6 736 aa19.21■□□□□ 0.67
HDGFL3-204ENST00000563790 COL16A1Q07092 1604 aaPredicted RBP19.19■□□□□ 0.66
HDGFL3-204ENST00000563790 MEX3CQ5U5Q3 659 aaKnown RBP19.17■□□□□ 0.66
HDGFL3-204ENST00000563790 SPATA31A6Q5VVP1 1343 aa19.17■□□□□ 0.66
HDGFL3-204ENST00000563790 SHPRHQ149N8 1683 aa19.17■□□□□ 0.66
HDGFL3-204ENST00000563790 ATAD2Q6PL18 1390 aa19.16■□□□□ 0.66
HDGFL3-204ENST00000563790 YY1P25490 414 aa19.15■□□□□ 0.66
HDGFL3-204ENST00000563790 LRRC9Q6ZRR7 1453 aa19.15■□□□□ 0.66
HDGFL3-204ENST00000563790 KDM5DQ9BY66 1539 aa19.15■□□□□ 0.66
HDGFL3-204ENST00000563790 NUTM2BA6NNL0 878 aaPredicted RBP19.12■□□□□ 0.65
HDGFL3-204ENST00000563790 NUTM2EB1AL46 878 aaPredicted RBP19.12■□□□□ 0.65
HDGFL3-204ENST00000563790 NUTM2DQ5VT03 806 aaPredicted RBP19.12■□□□□ 0.65
HDGFL3-204ENST00000563790 NUTM2AQ8IVF1 878 aaPredicted RBP19.12■□□□□ 0.65
HDGFL3-204ENST00000563790 NHSL1Q5SYE7 1610 aa19.11■□□□□ 0.65
HDGFL3-204ENST00000563790 ARHGAP5Q13017 1502 aa19.11■□□□□ 0.65
HDGFL3-204ENST00000563790 CDC42BPBQ9Y5S2 1711 aa19.11■□□□□ 0.65
HDGFL3-204ENST00000563790 FGD6Q6ZV73 1430 aa19.1■□□□□ 0.65
HDGFL3-204ENST00000563790 THEMISQ8N1K5 641 aaPredicted RBP19.09■□□□□ 0.65
HDGFL3-204ENST00000563790 UGGT1Q9NYU2 1555 aa19.08■□□□□ 0.65
HDGFL3-204ENST00000563790 KIF14Q15058 1648 aa19.07■□□□□ 0.64
HDGFL3-204ENST00000563790 PLXNC1O60486 1568 aa19.07■□□□□ 0.64
HDGFL3-204ENST00000563790 FAM135AQ9P2D6 1515 aa19.06■□□□□ 0.64
HDGFL3-204ENST00000563790 TNRQ92752 1358 aa19.06■□□□□ 0.64
HDGFL3-204ENST00000563790 ATP7AQ04656 1500 aa19.05■□□□□ 0.64
HDGFL3-204ENST00000563790 RBM6P78332 1123 aaKnown RBP19.04■□□□□ 0.64
HDGFL3-204ENST00000563790 SENP3-EIF4A1A0A087X0R7 540 aa19.02■□□□□ 0.64
HDGFL3-204ENST00000563790 MAP3K1Q13233 1512 aa19.01■□□□□ 0.63
HDGFL3-204ENST00000563790 CCDC125Q86Z20 511 aa19.01■□□□□ 0.63
HDGFL3-204ENST00000563790 NLRP1Q9C000 1473 aa19.01■□□□□ 0.63
HDGFL3-204ENST00000563790 AFF2P51816 1311 aa19■□□□□ 0.63
HDGFL3-204ENST00000563790 NWD1Q149M9 1564 aa19■□□□□ 0.63
HDGFL3-204ENST00000563790 SAMD9LQ8IVG5 1584 aa18.96■□□□□ 0.63
HDGFL3-204ENST00000563790 TMEM94Q12767 1356 aa18.95■□□□□ 0.62
HDGFL3-204ENST00000563790 PZPP20742 1482 aa18.95■□□□□ 0.62
HDGFL3-204ENST00000563790 FBXO31Q5XUX0 539 aaPredicted RBP18.93■□□□□ 0.62
HDGFL3-204ENST00000563790 QTRT2Q9H974 415 aaKnown RBP18.93■□□□□ 0.62
HDGFL3-204ENST00000563790 TIAM1Q13009 1591 aa18.93■□□□□ 0.62
HDGFL3-204ENST00000563790 PREX2Q70Z35 1606 aa18.92■□□□□ 0.62
HDGFL3-204ENST00000563790 GGT6Q6P531 493 aa18.92■□□□□ 0.62
HDGFL3-204ENST00000563790 AHDC1Q5TGY3 1603 aaPredicted RBP18.91■□□□□ 0.62
HDGFL3-204ENST00000563790 A2MP01023 1474 aa18.9■□□□□ 0.62
HDGFL3-204ENST00000563790 NGLY1Q96IV0 654 aa18.89■□□□□ 0.61
HDGFL3-204ENST00000563790 MIA2Q96PC5 1412 aa18.89■□□□□ 0.61
HDGFL3-204ENST00000563790 PRXQ9BXM0 1461 aa18.89■□□□□ 0.61
HDGFL3-204ENST00000563790 DIP2AQ14689 1571 aa18.89■□□□□ 0.61
HDGFL3-204ENST00000563790 SLAIN2Q9P270 581 aa18.88■□□□□ 0.61
HDGFL3-204ENST00000563790 ADGBQ8N7X0 1667 aa18.88■□□□□ 0.61
HDGFL3-204ENST00000563790 INO80Q9ULG1 1556 aaPredicted RBP18.86■□□□□ 0.61
HDGFL3-204ENST00000563790 BCL9LQ86UU0 1499 aa18.86■□□□□ 0.61
HDGFL3-204ENST00000563790 SCAF11Q99590 1463 aaKnown RBP18.86■□□□□ 0.61
HDGFL3-204ENST00000563790 ABCC3O15438 1527 aa18.85■□□□□ 0.61
HDGFL3-204ENST00000563790 HRCP23327 699 aa18.85■□□□□ 0.61
HDGFL3-204ENST00000563790 UBR1Q8IWV7 1749 aa18.85■□□□□ 0.61
HDGFL3-204ENST00000563790 KDM5AP29375 1690 aaKnown RBP18.84■□□□□ 0.61
HDGFL3-204ENST00000563790 PRDM15P57071 1507 aaPredicted RBP18.82■□□□□ 0.6
HDGFL3-204ENST00000563790 UTRNP46939 3433 aa18.81■□□□□ 0.6
HDGFL3-204ENST00000563790 MSH6P52701 1360 aa18.81■□□□□ 0.6
HDGFL3-204ENST00000563790 CDC42BPAQ5VT25 1732 aa18.8■□□□□ 0.6
HDGFL3-204ENST00000563790 BLMP54132 1417 aaPredicted RBP18.78■□□□□ 0.6
HDGFL3-204ENST00000563790 SPAG9O60271 1321 aaKnown RBP18.77■□□□□ 0.6
HDGFL3-204ENST00000563790 C1QTNF8P60827 252 aa18.77■□□□□ 0.6
HDGFL3-204ENST00000563790 PROSER2Q86WR7 435 aaPredicted RBP18.75■□□□□ 0.59
HDGFL3-204ENST00000563790 NKTRP30414 1462 aaKnown RBP18.75■□□□□ 0.59
HDGFL3-204ENST00000563790 TROQ12816 1431 aaPredicted RBP18.74■□□□□ 0.59
HDGFL3-204ENST00000563790 ARHGAP23Q9P227 1491 aa18.74■□□□□ 0.59
HDGFL3-204ENST00000563790 C8orf37Q96NL8 207 aa18.74■□□□□ 0.59
HDGFL3-204ENST00000563790 CFAP65Q6ZU64 1925 aaKnown RBP18.74■□□□□ 0.59
HDGFL3-204ENST00000563790 SLIT1O75093 1534 aa18.74■□□□□ 0.59
HDGFL3-204ENST00000563790 PSDA5PKW4 1024 aaPredicted RBP18.73■□□□□ 0.59
HDGFL3-204ENST00000563790 SUPT5HO00267 1087 aaKnown RBP18.73■□□□□ 0.59
HDGFL3-204ENST00000563790 KCNA6P17658 529 aa18.72■□□□□ 0.59
HDGFL3-204ENST00000563790 DEFB132Q7Z7B7 95 aa18.72■□□□□ 0.59
HDGFL3-204ENST00000563790 CHD4Q14839 1912 aa18.72■□□□□ 0.59
HDGFL3-204ENST00000563790 SYCP2Q9BX26 1530 aa18.71■□□□□ 0.59
HDGFL3-204ENST00000563790 LTKP29376 864 aa18.71■□□□□ 0.59
HDGFL3-204ENST00000563790 ZNF784Q8NCA9 323 aaPredicted RBP18.71■□□□□ 0.59
HDGFL3-204ENST00000563790 SLC34A2O95436 690 aa18.7■□□□□ 0.58
HDGFL3-204ENST00000563790 CDK11AQ9UQ88 783 aaPredicted RBP18.7■□□□□ 0.58
HDGFL3-204ENST00000563790 NCOA2Q15596 1464 aa18.7■□□□□ 0.58
HDGFL3-204ENST00000563790 CLIP1P30622 1438 aa18.68■□□□□ 0.58
HDGFL3-204ENST00000563790 BRWD3Q6RI45 1802 aa18.68■□□□□ 0.58
HDGFL3-204ENST00000563790 UNC13BO14795 1591 aa18.66■□□□□ 0.58
HDGFL3-204ENST00000563790 TXNDC2Q86VQ3 553 aa18.65■□□□□ 0.58
HDGFL3-204ENST00000563790 SPHKAPQ2M3C7 1700 aa18.64■□□□□ 0.57
HDGFL3-204ENST00000563790 SETD5Q9C0A6 1442 aa18.64■□□□□ 0.57
HDGFL3-204ENST00000563790 TRPC5Q9UL62 973 aaPredicted RBP18.63■□□□□ 0.57
HDGFL3-204ENST00000563790 LRRIQ1Q96JM4 1722 aa18.63■□□□□ 0.57
HDGFL3-204ENST00000563790 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.63■□□□□ 0.57
HDGFL3-204ENST00000563790 CHD2O14647 1828 aaKnown RBP18.63■□□□□ 0.57
HDGFL3-204ENST00000563790 ATRNO75882 1429 aa18.62■□□□□ 0.57
HDGFL3-204ENST00000563790 MAST1Q9Y2H9 1570 aa18.61■□□□□ 0.57
HDGFL3-204ENST00000563790 TET3O43151 1660 aa18.6■□□□□ 0.57
HDGFL3-204ENST00000563790 CAMTA1Q9Y6Y1 1673 aa18.59■□□□□ 0.57
HDGFL3-204ENST00000563790 WASHC2CQ9Y4E1 1318 aa18.58■□□□□ 0.57
HDGFL3-204ENST00000563790 GPATCH8Q9UKJ3 1502 aaKnown RBP18.58■□□□□ 0.56
HDGFL3-204ENST00000563790 MROH1Q8NDA8 1641 aa18.57■□□□□ 0.56
HDGFL3-204ENST00000563790 DCAF8L1A6NGE4 600 aa18.57■□□□□ 0.56
HDGFL3-204ENST00000563790 SF3B2Q13435 895 aaKnown RBP18.57■□□□□ 0.56
HDGFL3-204ENST00000563790 USP21Q9UK80 565 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms