RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 KDM5DQ9BY66 1539 aa17.16■□□□□ 0.34
SF3B3-204ENST00000563739 PPP6R1Q9UPN7 881 aa17.15■□□□□ 0.34
SF3B3-204ENST00000563739 FAM135AQ9P2D6 1515 aa17.15■□□□□ 0.34
SF3B3-204ENST00000563739 DEPDC5O75140 1603 aa17.14■□□□□ 0.33
SF3B3-204ENST00000563739 HSPA1LP34931 641 aa17.14■□□□□ 0.33
SF3B3-204ENST00000563739 GGT6Q6P531 493 aa17.14■□□□□ 0.33
SF3B3-204ENST00000563739 EHBP1L1Q8N3D4 1523 aa17.14■□□□□ 0.33
SF3B3-204ENST00000563739 CCNB3Q8WWL7 1395 aa17.14■□□□□ 0.33
SF3B3-204ENST00000563739 RTEL1-TNFRSF6BF6WH68 1400 aa17.13■□□□□ 0.33
SF3B3-204ENST00000563739 ZC3H13Q5T200 1668 aaKnown RBP17.12■□□□□ 0.33
SF3B3-204ENST00000563739 DHX29Q7Z478 1369 aaKnown RBP17.12■□□□□ 0.33
SF3B3-204ENST00000563739 MED14O60244 1454 aa17.12■□□□□ 0.33
SF3B3-204ENST00000563739 FBXO31Q5XUX0 539 aaPredicted RBP17.11■□□□□ 0.33
SF3B3-204ENST00000563739 CFDP1Q9UEE9 299 aaPredicted RBP17.11■□□□□ 0.33
SF3B3-204ENST00000563739 TNRQ92752 1358 aa17.11■□□□□ 0.33
SF3B3-204ENST00000563739 SENP3Q9H4L4 574 aaPredicted RBP17.1■□□□□ 0.33
SF3B3-204ENST00000563739 MROH1Q8NDA8 1641 aa17.1■□□□□ 0.33
SF3B3-204ENST00000563739 RNF17Q9BXT8 1623 aaKnown RBP17.1■□□□□ 0.33
SF3B3-204ENST00000563739 IQGAP1P46940 1657 aa17.1■□□□□ 0.33
SF3B3-204ENST00000563739 CEP162Q5TB80 1403 aa17.09■□□□□ 0.33
SF3B3-204ENST00000563739 CAMSAP2Q08AD1 1489 aa17.08■□□□□ 0.32
SF3B3-204ENST00000563739 XIRP1Q702N8 1843 aaKnown RBP17.07■□□□□ 0.32
SF3B3-204ENST00000563739 CCDC141Q6ZP82 1450 aa17.07■□□□□ 0.32
SF3B3-204ENST00000563739 SYNMO15061 1565 aa17.06■□□□□ 0.32
SF3B3-204ENST00000563739 MTUS2Q5JR59 1369 aa17.06■□□□□ 0.32
SF3B3-204ENST00000563739 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.06■□□□□ 0.32
SF3B3-204ENST00000563739 UGGT1Q9NYU2 1555 aa17.06■□□□□ 0.32
SF3B3-204ENST00000563739 ARHGEF5Q12774 1597 aa17.05■□□□□ 0.32
SF3B3-204ENST00000563739 LRRC7Q96NW7 1537 aa17.05■□□□□ 0.32
SF3B3-204ENST00000563739 NLRP1Q9C000 1473 aa17.05■□□□□ 0.32
SF3B3-204ENST00000563739 NPHP4O75161 1426 aaPredicted RBP17.04■□□□□ 0.32
SF3B3-204ENST00000563739 ABCC3O15438 1527 aa17.04■□□□□ 0.32
SF3B3-204ENST00000563739 MIA2Q96PC5 1412 aa17.04■□□□□ 0.32
SF3B3-204ENST00000563739 UBR1Q8IWV7 1749 aa17.03■□□□□ 0.32
SF3B3-204ENST00000563739 NCOA2Q15596 1464 aa17.02■□□□□ 0.32
SF3B3-204ENST00000563739 PIP4K2BP78356 416 aa17.02■□□□□ 0.32
SF3B3-204ENST00000563739 CEP152O94986 1710 aa17.01■□□□□ 0.31
SF3B3-204ENST00000563739 MAST1Q9Y2H9 1570 aa17.01■□□□□ 0.31
SF3B3-204ENST00000563739 ERVK-7P63135 1459 aa16.99■□□□□ 0.31
SF3B3-204ENST00000563739 KIF3BO15066 747 aa16.99■□□□□ 0.31
SF3B3-204ENST00000563739 EIF2AK4Q9P2K8 1649 aaKnown RBP16.99■□□□□ 0.31
SF3B3-204ENST00000563739 SCAF1Q9H7N4 1312 aaKnown RBP16.97■□□□□ 0.31
SF3B3-204ENST00000563739 TOM1O60784 492 aa16.97■□□□□ 0.31
SF3B3-204ENST00000563739 ARHGAP23Q9P227 1491 aa16.95■□□□□ 0.3
SF3B3-204ENST00000563739 RGS17Q9UGC6 210 aaPredicted RBP16.94■□□□□ 0.3
SF3B3-204ENST00000563739 ANKLE2Q86XL3 938 aa16.93■□□□□ 0.3
SF3B3-204ENST00000563739 SLIT1O75093 1534 aa16.92■□□□□ 0.3
SF3B3-204ENST00000563739 WASHC2CQ9Y4E1 1318 aa16.92■□□□□ 0.3
SF3B3-204ENST00000563739 CFAP65Q6ZU64 1925 aaKnown RBP16.92■□□□□ 0.3
SF3B3-204ENST00000563739 PRDM15P57071 1507 aaPredicted RBP16.9■□□□□ 0.3
SF3B3-204ENST00000563739 SCAF11Q99590 1463 aaKnown RBP16.89■□□□□ 0.29
SF3B3-204ENST00000563739 THEMISQ8N1K5 641 aaPredicted RBP16.89■□□□□ 0.29
SF3B3-204ENST00000563739 PIK3C2BO00750 1634 aa16.88■□□□□ 0.29
SF3B3-204ENST00000563739 MAP3K1Q13233 1512 aa16.88■□□□□ 0.29
SF3B3-204ENST00000563739 CROCC2H7BZ55 1655 aa16.88■□□□□ 0.29
SF3B3-204ENST00000563739 LTKP29376 864 aa16.84■□□□□ 0.29
SF3B3-204ENST00000563739 LRRC9Q6ZRR7 1453 aa16.84■□□□□ 0.29
SF3B3-204ENST00000563739 SETD1AO15047 1707 aaKnown RBP16.84■□□□□ 0.29
SF3B3-204ENST00000563739 ARHGAP31Q2M1Z3 1444 aa16.83■□□□□ 0.28
SF3B3-204ENST00000563739 KDM5AP29375 1690 aaKnown RBP16.82■□□□□ 0.28
SF3B3-204ENST00000563739 ROBO1Q9Y6N7 1651 aa16.82■□□□□ 0.28
SF3B3-204ENST00000563739 TET3O43151 1660 aa16.81■□□□□ 0.28
SF3B3-204ENST00000563739 NWD1Q149M9 1564 aa16.81■□□□□ 0.28
SF3B3-204ENST00000563739 DUOX2Q9NRD8 1548 aa16.81■□□□□ 0.28
SF3B3-204ENST00000563739 RSPH4AQ5TD94 716 aa16.81■□□□□ 0.28
SF3B3-204ENST00000563739 FAM135BQ49AJ0 1406 aa16.79■□□□□ 0.28
SF3B3-204ENST00000563739 POTEAQ6S8J7 498 aa16.77■□□□□ 0.28
SF3B3-204ENST00000563739 MYOM3Q5VTT5 1437 aa16.76■□□□□ 0.27
SF3B3-204ENST00000563739 LMTK2Q8IWU2 1503 aa16.75■□□□□ 0.27
SF3B3-204ENST00000563739 VPS8Q8N3P4 1428 aa16.75■□□□□ 0.27
SF3B3-204ENST00000563739 ERBINQ96RT1 1412 aa16.74■□□□□ 0.27
SF3B3-204ENST00000563739 EFCAB6Q5THR3 1501 aa16.74■□□□□ 0.27
SF3B3-204ENST00000563739 TMEM2Q9UHN6 1383 aa16.74■□□□□ 0.27
SF3B3-204ENST00000563739 ABCC5O15440 1437 aa16.73■□□□□ 0.27
SF3B3-204ENST00000563739 TSPY4P0CV99 314 aa16.73■□□□□ 0.27
SF3B3-204ENST00000563739 TSPY10P0CW01 314 aa16.73■□□□□ 0.27
SF3B3-204ENST00000563739 KANK4Q5T7N3 995 aaPredicted RBP16.73■□□□□ 0.27
SF3B3-204ENST00000563739 TMEM94Q12767 1356 aa16.73■□□□□ 0.27
SF3B3-204ENST00000563739 MYO5BQ9ULV0 1848 aa16.73■□□□□ 0.27
SF3B3-204ENST00000563739 ADGRB3O60242 1522 aa16.72■□□□□ 0.27
SF3B3-204ENST00000563739 COL16A1Q07092 1604 aaPredicted RBP16.71■□□□□ 0.27
SF3B3-204ENST00000563739 KIF15Q9NS87 1388 aa16.71■□□□□ 0.27
SF3B3-204ENST00000563739 PTPN23Q9H3S7 1636 aa16.7■□□□□ 0.26
SF3B3-204ENST00000563739 NKTRP30414 1462 aaKnown RBP16.7■□□□□ 0.26
SF3B3-204ENST00000563739 TXNDC2Q86VQ3 553 aa16.7■□□□□ 0.26
SF3B3-204ENST00000563739 PHLPP1O60346 1717 aa16.7■□□□□ 0.26
SF3B3-204ENST00000563739 NOS1P29475 1434 aa16.7■□□□□ 0.26
SF3B3-204ENST00000563739 CHD2O14647 1828 aaKnown RBP16.68■□□□□ 0.26
SF3B3-204ENST00000563739 LRP6O75581 1613 aa16.68■□□□□ 0.26
SF3B3-204ENST00000563739 SRCAPQ6ZRS2 3230 aa16.67■□□□□ 0.26
SF3B3-204ENST00000563739 DAPK1P53355 1430 aa16.66■□□□□ 0.26
SF3B3-204ENST00000563739 RBM33Q96EV2 1170 aaKnown RBP16.66■□□□□ 0.26
SF3B3-204ENST00000563739 ZFYVE9O95405 1425 aa16.65■□□□□ 0.26
SF3B3-204ENST00000563739 GCC2Q8IWJ2 1684 aa16.65■□□□□ 0.26
SF3B3-204ENST00000563739 KCNA6P17658 529 aa16.63■□□□□ 0.25
SF3B3-204ENST00000563739 IDI1Q13907 227 aa16.63■□□□□ 0.25
SF3B3-204ENST00000563739 TMEM131LA2VDJ0 1609 aa16.61■□□□□ 0.25
SF3B3-204ENST00000563739 SLC26A8Q96RN1 970 aa16.61■□□□□ 0.25
SF3B3-204ENST00000563739 DIP2AQ14689 1571 aa16.6■□□□□ 0.25
SF3B3-204ENST00000563739 SHPRHQ149N8 1683 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms