RNA–Protein interactions for RNA: ENST00000563239.1

UBR1-204, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-204ENST00000563239 KIF3BO15066 747 aa13.14□□□□□ -0.31
UBR1-204ENST00000563239 CEBPAP49715 358 aaPredicted RBP13.14□□□□□ -0.31
UBR1-204ENST00000563239 GGT6Q6P531 493 aa13.14□□□□□ -0.31
UBR1-204ENST00000563239 DISP3Q9P2K9 1392 aa13.13□□□□□ -0.31
UBR1-204ENST00000563239 ANKRD30AQ9BXX3 1397 aa13.12□□□□□ -0.31
UBR1-204ENST00000563239 CNTLNQ9NXG0 1405 aa13.12□□□□□ -0.31
UBR1-204ENST00000563239 MROH1Q8NDA8 1641 aa13.11□□□□□ -0.31
UBR1-204ENST00000563239 RNF17Q9BXT8 1623 aaKnown RBP13.11□□□□□ -0.31
UBR1-204ENST00000563239 EIF2AK4Q9P2K8 1649 aaKnown RBP13.11□□□□□ -0.31
UBR1-204ENST00000563239 PPP6R1Q9UPN7 881 aa13.11□□□□□ -0.31
UBR1-204ENST00000563239 C3P01024 1663 aa13.11□□□□□ -0.31
UBR1-204ENST00000563239 CLTCQ00610 1675 aaKnown RBP13.1□□□□□ -0.31
UBR1-204ENST00000563239 ERBINQ96RT1 1412 aa13.1□□□□□ -0.31
UBR1-204ENST00000563239 ZMYM3Q14202 1370 aa13.09□□□□□ -0.31
UBR1-204ENST00000563239 MROH2AA6NES4 1674 aa13.09□□□□□ -0.31
UBR1-204ENST00000563239 ROCK1Q13464 1354 aa13.08□□□□□ -0.31
UBR1-204ENST00000563239 ESF1Q9H501 851 aaKnown RBP13.08□□□□□ -0.32
UBR1-204ENST00000563239 ITGAEP38570 1179 aa13.07□□□□□ -0.32
UBR1-204ENST00000563239 KDM5DQ9BY66 1539 aa13.07□□□□□ -0.32
UBR1-204ENST00000563239 FAM135AQ9P2D6 1515 aa13.07□□□□□ -0.32
UBR1-204ENST00000563239 ABCC3O15438 1527 aa13.06□□□□□ -0.32
UBR1-204ENST00000563239 DEPDC5O75140 1603 aa13.06□□□□□ -0.32
UBR1-204ENST00000563239 WASHC2CQ9Y4E1 1318 aa13.05□□□□□ -0.32
UBR1-204ENST00000563239 ANKRD50Q9ULJ7 1429 aa13.05□□□□□ -0.32
UBR1-204ENST00000563239 PRDM15P57071 1507 aaPredicted RBP13.04□□□□□ -0.32
UBR1-204ENST00000563239 NPATQ14207 1427 aa13.04□□□□□ -0.32
UBR1-204ENST00000563239 VWDEQ8N2E2 1590 aa13.03□□□□□ -0.32
UBR1-204ENST00000563239 FBXO31Q5XUX0 539 aaPredicted RBP13.02□□□□□ -0.33
UBR1-204ENST00000563239 PZPP20742 1482 aa13.02□□□□□ -0.33
UBR1-204ENST00000563239 PREX1Q8TCU6 1659 aa13.02□□□□□ -0.33
UBR1-204ENST00000563239 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.01□□□□□ -0.33
UBR1-204ENST00000563239 ZC3H13Q5T200 1668 aaKnown RBP13.01□□□□□ -0.33
UBR1-204ENST00000563239 CEP152O94986 1710 aa13.01□□□□□ -0.33
UBR1-204ENST00000563239 HSPA2P54652 639 aa13□□□□□ -0.33
UBR1-204ENST00000563239 SETD1BQ9UPS6 1966 aaKnown RBP13□□□□□ -0.33
UBR1-204ENST00000563239 LMTK2Q8IWU2 1503 aa12.99□□□□□ -0.33
UBR1-204ENST00000563239 CAMSAP1Q5T5Y3 1602 aa12.99□□□□□ -0.33
UBR1-204ENST00000563239 NAIPQ13075 1403 aa12.98□□□□□ -0.33
UBR1-204ENST00000563239 UHRF1BP1Q6BDS2 1440 aa12.98□□□□□ -0.33
UBR1-204ENST00000563239 UNC13BO14795 1591 aa12.98□□□□□ -0.33
UBR1-204ENST00000563239 ARHGAP31Q2M1Z3 1444 aa12.97□□□□□ -0.33
UBR1-204ENST00000563239 KANK1Q14678 1352 aa12.96□□□□□ -0.33
UBR1-204ENST00000563239 MYO3AQ8NEV4 1616 aa12.96□□□□□ -0.33
UBR1-204ENST00000563239 SPATA31D1Q6ZQQ2 1576 aa12.96□□□□□ -0.33
UBR1-204ENST00000563239 ERVK-7P63135 1459 aa12.96□□□□□ -0.34
UBR1-204ENST00000563239 HFM1A2PYH4 1435 aa12.96□□□□□ -0.34
UBR1-204ENST00000563239 TNRQ92752 1358 aa12.95□□□□□ -0.34
UBR1-204ENST00000563239 GCC2Q8IWJ2 1684 aa12.94□□□□□ -0.34
UBR1-204ENST00000563239 EFCAB6Q5THR3 1501 aa12.93□□□□□ -0.34
UBR1-204ENST00000563239 ZNF142P52746 1687 aaPredicted RBP12.93□□□□□ -0.34
UBR1-204ENST00000563239 CEP170BQ9Y4F5 1589 aaPredicted RBP12.93□□□□□ -0.34
UBR1-204ENST00000563239 A2ML1A8K2U0 1454 aa12.92□□□□□ -0.34
UBR1-204ENST00000563239 IQGAP3Q86VI3 1631 aa12.92□□□□□ -0.34
UBR1-204ENST00000563239 TET3O43151 1660 aa12.91□□□□□ -0.34
UBR1-204ENST00000563239 STRCQ7RTU9 1775 aa12.91□□□□□ -0.34
UBR1-204ENST00000563239 NUP155O75694 1391 aa12.91□□□□□ -0.34
UBR1-204ENST00000563239 NOS1P29475 1434 aa12.9□□□□□ -0.34
UBR1-204ENST00000563239 NLRP1Q9C000 1473 aa12.9□□□□□ -0.34
UBR1-204ENST00000563239 CFAP65Q6ZU64 1925 aaKnown RBP12.89□□□□□ -0.35
UBR1-204ENST00000563239 SYNMO15061 1565 aa12.89□□□□□ -0.35
UBR1-204ENST00000563239 RPRD2Q5VT52 1461 aaKnown RBP12.88□□□□□ -0.35
UBR1-204ENST00000563239 E9PCH4 1651 aa12.88□□□□□ -0.35
UBR1-204ENST00000563239 PLA2R1Q13018 1463 aa12.86□□□□□ -0.35
UBR1-204ENST00000563239 IDI1Q13907 227 aa12.85□□□□□ -0.35
UBR1-204ENST00000563239 UGGT1Q9NYU2 1555 aa12.85□□□□□ -0.35
UBR1-204ENST00000563239 NCKAP5LQ9HCH0 1330 aa12.85□□□□□ -0.35
UBR1-204ENST00000563239 SETD5Q9C0A6 1442 aa12.84□□□□□ -0.35
UBR1-204ENST00000563239 UBR1Q8IWV7 1749 aa12.84□□□□□ -0.35
UBR1-204ENST00000563239 PIK3C2BO00750 1634 aa12.84□□□□□ -0.35
UBR1-204ENST00000563239 THEMISQ8N1K5 641 aaPredicted RBP12.83□□□□□ -0.36
UBR1-204ENST00000563239 PTPRTO14522 1441 aa12.82□□□□□ -0.36
UBR1-204ENST00000563239 TRIM52Q96A61 297 aa12.82□□□□□ -0.36
UBR1-204ENST00000563239 PKD2Q13563 968 aa12.81□□□□□ -0.36
UBR1-204ENST00000563239 SLC52A1Q9NWF4 448 aa12.81□□□□□ -0.36
UBR1-204ENST00000563239 NEURL4Q96JN8 1562 aa12.81□□□□□ -0.36
UBR1-204ENST00000563239 ARHGAP23Q9P227 1491 aa12.8□□□□□ -0.36
UBR1-204ENST00000563239 DMRT2Q9Y5R5 561 aa12.8□□□□□ -0.36
UBR1-204ENST00000563239 RAB3GAP2Q9H2M9 1393 aa12.8□□□□□ -0.36
UBR1-204ENST00000563239 KDM5AP29375 1690 aaKnown RBP12.8□□□□□ -0.36
UBR1-204ENST00000563239 SLIT1O75093 1534 aa12.79□□□□□ -0.36
UBR1-204ENST00000563239 ADGRB3O60242 1522 aa12.78□□□□□ -0.36
UBR1-204ENST00000563239 LTKP29376 864 aa12.78□□□□□ -0.36
UBR1-204ENST00000563239 SLC4A1APQ9BWU0 796 aaKnown RBP12.78□□□□□ -0.36
UBR1-204ENST00000563239 TMEM2Q9UHN6 1383 aa12.78□□□□□ -0.36
UBR1-204ENST00000563239 MED14O60244 1454 aa12.78□□□□□ -0.36
UBR1-204ENST00000563239 TMEM131LA2VDJ0 1609 aa12.77□□□□□ -0.36
UBR1-204ENST00000563239 SPHKAPQ2M3C7 1700 aa12.77□□□□□ -0.36
UBR1-204ENST00000563239 ANKLE2Q86XL3 938 aa12.77□□□□□ -0.37
UBR1-204ENST00000563239 MPHOSPH9Q99550 1183 aa12.77□□□□□ -0.37
UBR1-204ENST00000563239 POLR1AO95602 1720 aaPredicted RBP12.76□□□□□ -0.37
UBR1-204ENST00000563239 FOXD1Q16676 465 aa12.76□□□□□ -0.37
UBR1-204ENST00000563239 TRPM2O94759 1503 aa12.76□□□□□ -0.37
UBR1-204ENST00000563239 HRCP23327 699 aa12.75□□□□□ -0.37
UBR1-204ENST00000563239 CLTCL1P53675 1640 aa12.74□□□□□ -0.37
UBR1-204ENST00000563239 SCAF11Q99590 1463 aaKnown RBP12.74□□□□□ -0.37
UBR1-204ENST00000563239 NPHP4O75161 1426 aaPredicted RBP12.74□□□□□ -0.37
UBR1-204ENST00000563239 ZFYVE9O95405 1425 aa12.74□□□□□ -0.37
UBR1-204ENST00000563239 TXNDC2Q86VQ3 553 aa12.74□□□□□ -0.37
UBR1-204ENST00000563239 STAG3Q9UJ98 1225 aa12.74□□□□□ -0.37
UBR1-204ENST00000563239 MYO5BQ9ULV0 1848 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms