RNA–Protein interactions for RNA: ENST00000561304.5

ZEB1-223, Transcript of zinc finger E-box binding homeobox 1, human

TSL 1 (best)

Gene ZEB1, Length 1,383 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZEB1-223	ENST00000561304	ZNF692	Q9BU19	519 aa	Predicted RBP	11.9	□□□□□ -0.5
ZEB1-223	ENST00000561304	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.9	□□□□□ -0.5
ZEB1-223	ENST00000561304	SSUH2	Q9Y2M2	353 aa		11.89	□□□□□ -0.51
ZEB1-223	ENST00000561304	NCOA2	Q15596	1464 aa		11.89	□□□□□ -0.51
ZEB1-223	ENST00000561304	KIAA1107	Q9UPP5	1409 aa		11.87	□□□□□ -0.51
ZEB1-223	ENST00000561304	PLEKHH2	Q8IVE3	1493 aa		11.87	□□□□□ -0.51
ZEB1-223	ENST00000561304	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.87	□□□□□ -0.51	4e-6	■■■■□ 20.1
ZEB1-223	ENST00000561304	MBD5	Q9P267	1494 aa		11.86	□□□□□ -0.51
ZEB1-223	ENST00000561304	MYT1L	Q9UL68	1186 aa		11.86	□□□□□ -0.51
ZEB1-223	ENST00000561304	ZNF644	Q9H582	1327 aa	Predicted RBP	11.86	□□□□□ -0.51
ZEB1-223	ENST00000561304	MROH2A	A6NES4	1674 aa		11.86	□□□□□ -0.51
ZEB1-223	ENST00000561304	CLTC	Q00610	1675 aa	Known RBP	11.86	□□□□□ -0.51
ZEB1-223	ENST00000561304	CAMSAP2	Q08AD1	1489 aa		11.85	□□□□□ -0.51
ZEB1-223	ENST00000561304	LRRC9	Q6ZRR7	1453 aa		11.85	□□□□□ -0.51
ZEB1-223	ENST00000561304	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.85	□□□□□ -0.51
ZEB1-223	ENST00000561304	STRC	Q7RTU9	1775 aa		11.84	□□□□□ -0.51
ZEB1-223	ENST00000561304	SETD1B	Q9UPS6	1966 aa	Known RBP	11.83	□□□□□ -0.51
ZEB1-223	ENST00000561304	SPAG9	O60271	1321 aa	Known RBP	11.83	□□□□□ -0.52
ZEB1-223	ENST00000561304	CEBPA	P49715	358 aa	Predicted RBP	11.82	□□□□□ -0.52
ZEB1-223	ENST00000561304	MAP3K1	Q13233	1512 aa		11.82	□□□□□ -0.52
ZEB1-223	ENST00000561304	REM2	Q8IYK8	340 aa	Predicted RBP	11.82	□□□□□ -0.52
ZEB1-223	ENST00000561304	ARHGEF5	Q12774	1597 aa		11.82	□□□□□ -0.52
ZEB1-223	ENST00000561304	A2M	P01023	1474 aa		11.81	□□□□□ -0.52
ZEB1-223	ENST00000561304	HSPA2	P54652	639 aa		11.81	□□□□□ -0.52
ZEB1-223	ENST00000561304	CCDC141	Q6ZP82	1450 aa		11.81	□□□□□ -0.52
ZEB1-223	ENST00000561304	SPDYE4	A6NLX3	237 aa		11.79	□□□□□ -0.52
ZEB1-223	ENST00000561304	KANK4	Q5T7N3	995 aa	Predicted RBP	11.79	□□□□□ -0.52
ZEB1-223	ENST00000561304	CROCC2	H7BZ55	1655 aa		11.79	□□□□□ -0.52
ZEB1-223	ENST00000561304	MYO3A	Q8NEV4	1616 aa		11.77	□□□□□ -0.52
ZEB1-223	ENST00000561304	MAST1	Q9Y2H9	1570 aa		11.77	□□□□□ -0.53
ZEB1-223	ENST00000561304	ZNF142	P52746	1687 aa	Predicted RBP	11.77	□□□□□ -0.53
ZEB1-223	ENST00000561304	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.76	□□□□□ -0.53
ZEB1-223	ENST00000561304	ILDR1	Q86SU0	546 aa	Predicted RBP	11.76	□□□□□ -0.53
ZEB1-223	ENST00000561304	CNTLN	Q9NXG0	1405 aa		11.76	□□□□□ -0.53
ZEB1-223	ENST00000561304	PIP4P2	Q8N4L2	257 aa		11.75	□□□□□ -0.53
ZEB1-223	ENST00000561304	MYOM3	Q5VTT5	1437 aa		11.75	□□□□□ -0.53
ZEB1-223	ENST00000561304	UHRF1BP1	Q6BDS2	1440 aa		11.75	□□□□□ -0.53
ZEB1-223	ENST00000561304	PTPN23	Q9H3S7	1636 aa		11.74	□□□□□ -0.53
ZEB1-223	ENST00000561304	RNF17	Q9BXT8	1623 aa	Known RBP	11.74	□□□□□ -0.53
ZEB1-223	ENST00000561304	CEP152	O94986	1710 aa		11.73	□□□□□ -0.53
ZEB1-223	ENST00000561304	HAX1	O00165	279 aa		11.72	□□□□□ -0.53
ZEB1-223	ENST00000561304	MROH1	Q8NDA8	1641 aa		11.71	□□□□□ -0.53
ZEB1-223	ENST00000561304	EIF2AK4	Q9P2K8	1649 aa	Known RBP	11.71	□□□□□ -0.53
ZEB1-223	ENST00000561304	ZMYM3	Q14202	1370 aa		11.71	□□□□□ -0.53
ZEB1-223	ENST00000561304	DHX29	Q7Z478	1369 aa	Known RBP	11.71	□□□□□ -0.53
ZEB1-223	ENST00000561304	NPAT	Q14207	1427 aa		11.71	□□□□□ -0.54
ZEB1-223	ENST00000561304	PTPRK	Q15262	1439 aa		11.71	□□□□□ -0.54
ZEB1-223	ENST00000561304	MIA2	Q96PC5	1412 aa		11.71	□□□□□ -0.54
ZEB1-223	ENST00000561304	KDM5D	Q9BY66	1539 aa		11.71	□□□□□ -0.54
ZEB1-223	ENST00000561304	DNMT1	P26358	1616 aa	Known RBP	11.71	□□□□□ -0.54
ZEB1-223	ENST00000561304	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	11.7	□□□□□ -0.54
ZEB1-223	ENST00000561304	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.7	□□□□□ -0.54
ZEB1-223	ENST00000561304	ESF1	Q9H501	851 aa	Known RBP	11.7	□□□□□ -0.54
ZEB1-223	ENST00000561304	CAMSAP1	Q5T5Y3	1602 aa		11.7	□□□□□ -0.54
ZEB1-223	ENST00000561304	ZC3H13	Q5T200	1668 aa	Known RBP	11.7	□□□□□ -0.54
ZEB1-223	ENST00000561304	CFAP65	Q6ZU64	1925 aa	Known RBP	11.69	□□□□□ -0.54
ZEB1-223	ENST00000561304	GGT6	Q6P531	493 aa		11.69	□□□□□ -0.54
ZEB1-223	ENST00000561304	PITPNM1	O00562	1244 aa		11.68	□□□□□ -0.54
ZEB1-223	ENST00000561304	FAM135A	Q9P2D6	1515 aa		11.68	□□□□□ -0.54
ZEB1-223	ENST00000561304	POLR1A	O95602	1720 aa	Predicted RBP	11.67	□□□□□ -0.54
ZEB1-223	ENST00000561304	TCOF1	Q13428	1488 aa	Known RBP	11.67	□□□□□ -0.54
ZEB1-223	ENST00000561304	NCOA1	Q15788	1441 aa		11.67	□□□□□ -0.54
ZEB1-223	ENST00000561304	FGD6	Q6ZV73	1430 aa		11.67	□□□□□ -0.54
ZEB1-223	ENST00000561304	SHANK2	Q9UPX8	1470 aa		11.66	□□□□□ -0.54
ZEB1-223	ENST00000561304	ABCC5	O15440	1437 aa		11.66	□□□□□ -0.54
ZEB1-223	ENST00000561304	KIF3B	O15066	747 aa		11.66	□□□□□ -0.54
ZEB1-223	ENST00000561304	RSPH4A	Q5TD94	716 aa		11.66	□□□□□ -0.54
ZEB1-223	ENST00000561304	ABCC3	O15438	1527 aa		11.65	□□□□□ -0.54
ZEB1-223	ENST00000561304	DEPDC5	O75140	1603 aa		11.65	□□□□□ -0.54
ZEB1-223	ENST00000561304	PZP	P20742	1482 aa		11.65	□□□□□ -0.55
ZEB1-223	ENST00000561304	DUOX2	Q9NRD8	1548 aa		11.64	□□□□□ -0.55
ZEB1-223	ENST00000561304	DAPK1	P53355	1430 aa		11.64	□□□□□ -0.55
ZEB1-223	ENST00000561304	PRDM15	P57071	1507 aa	Predicted RBP	11.63	□□□□□ -0.55
ZEB1-223	ENST00000561304	TSPY4	P0CV99	314 aa		11.63	□□□□□ -0.55
ZEB1-223	ENST00000561304	TSPY10	P0CW01	314 aa		11.63	□□□□□ -0.55
ZEB1-223	ENST00000561304	LTBP4	Q8N2S1	1624 aa		11.62	□□□□□ -0.55
ZEB1-223	ENST00000561304	PROM2	Q8N271	834 aa		11.62	□□□□□ -0.55
ZEB1-223	ENST00000561304	PTPRT	O14522	1441 aa		11.62	□□□□□ -0.55
ZEB1-223	ENST00000561304	A2ML1	A8K2U0	1454 aa		11.61	□□□□□ -0.55
ZEB1-223	ENST00000561304	NEURL4	Q96JN8	1562 aa		11.61	□□□□□ -0.55
ZEB1-223	ENST00000561304	PLA2R1	Q13018	1463 aa		11.61	□□□□□ -0.55
ZEB1-223	ENST00000561304	SPATA31D1	Q6ZQQ2	1576 aa		11.61	□□□□□ -0.55
ZEB1-223	ENST00000561304	EVX2	Q03828	476 aa		11.6	□□□□□ -0.55
ZEB1-223	ENST00000561304	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.6	□□□□□ -0.55
ZEB1-223	ENST00000561304	FBXO41	Q8TF61	875 aa		11.6	□□□□□ -0.55
ZEB1-223	ENST00000561304	KIF15	Q9NS87	1388 aa		11.6	□□□□□ -0.55
ZEB1-223	ENST00000561304	FKBP8	Q14318	412 aa		11.59	□□□□□ -0.55
ZEB1-223	ENST00000561304	CLEC11A	Q9Y240	323 aa		11.59	□□□□□ -0.55
ZEB1-223	ENST00000561304	TNR	Q92752	1358 aa		11.59	□□□□□ -0.55
ZEB1-223	ENST00000561304	ERBIN	Q96RT1	1412 aa		11.59	□□□□□ -0.55
ZEB1-223	ENST00000561304	UBR1	Q8IWV7	1749 aa		11.59	□□□□□ -0.55
ZEB1-223	ENST00000561304	WASHC2C	Q9Y4E1	1318 aa		11.58	□□□□□ -0.56
ZEB1-223	ENST00000561304	ERVK-7	P63135	1459 aa		11.57	□□□□□ -0.56
ZEB1-223	ENST00000561304	NCKAP5L	Q9HCH0	1330 aa		11.57	□□□□□ -0.56
ZEB1-223	ENST00000561304	CERK	Q8TCT0	537 aa		11.57	□□□□□ -0.56
ZEB1-223	ENST00000561304	STAG3	Q9UJ98	1225 aa		11.57	□□□□□ -0.56
ZEB1-223	ENST00000561304	VWDE	Q8N2E2	1590 aa		11.57	□□□□□ -0.56
ZEB1-223	ENST00000561304	ADGRL2	O95490	1459 aa		11.57	□□□□□ -0.56
ZEB1-223	ENST00000561304	UGGT1	Q9NYU2	1555 aa		11.56	□□□□□ -0.56
ZEB1-223	ENST00000561304	RRP7BP	Q9NSQ0	103 aa		11.55	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms