RNA–Protein interactions for RNA: ENST00000560055.5

RPL28-209, Transcript of ribosomal protein L28, humanhuman

TSL 3 BASIC

Gene RPL28, Length 670 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-209ENST00000560055 LMTK3Q96Q04 1460 aa25.68■■□□□ 1.7
RPL28-209ENST00000560055 CNTLNQ9NXG0 1405 aa25.68■■□□□ 1.7
RPL28-209ENST00000560055 RNF17Q9BXT8 1623 aaKnown RBP25.67■■□□□ 1.7
RPL28-209ENST00000560055 ITGAEP38570 1179 aa25.65■■□□□ 1.7
RPL28-209ENST00000560055 FAM135AQ9P2D6 1515 aa25.63■■□□□ 1.69
RPL28-209ENST00000560055 MROH1Q8NDA8 1641 aa25.63■■□□□ 1.69
RPL28-209ENST00000560055 ESF1Q9H501 851 aaKnown RBP25.62■■□□□ 1.69
RPL28-209ENST00000560055 CEBPAP49715 358 aaPredicted RBP25.61■■□□□ 1.69
RPL28-209ENST00000560055 ILDR1Q86SU0 546 aaPredicted RBP25.61■■□□□ 1.69
RPL28-209ENST00000560055 ANKRD50Q9ULJ7 1429 aa25.61■■□□□ 1.69
RPL28-209ENST00000560055 MROH2AA6NES4 1674 aa25.61■■□□□ 1.69
RPL28-209ENST00000560055 HSPA2P54652 639 aa25.6■■□□□ 1.69
RPL28-209ENST00000560055 KDM5DQ9BY66 1539 aa25.59■■□□□ 1.69
RPL28-209ENST00000560055 CLTCQ00610 1675 aaKnown RBP25.58■■□□□ 1.69
RPL28-209ENST00000560055 DEPDC5O75140 1603 aa25.58■■□□□ 1.69
RPL28-209ENST00000560055 PRDM15P57071 1507 aaPredicted RBP25.58■■□□□ 1.68
RPL28-209ENST00000560055 ZMYM3Q14202 1370 aa25.57■■□□□ 1.68
RPL28-209ENST00000560055 C3P01024 1663 aa25.57■■□□□ 1.68
RPL28-209ENST00000560055 ABCC3O15438 1527 aa25.54■■□□□ 1.68
RPL28-209ENST00000560055 WASHC2CQ9Y4E1 1318 aa25.54■■□□□ 1.68
RPL28-209ENST00000560055 ZC3H13Q5T200 1668 aaKnown RBP25.52■■□□□ 1.68
RPL28-209ENST00000560055 VWDEQ8N2E2 1590 aa25.5■■□□□ 1.67
RPL28-209ENST00000560055 NAIPQ13075 1403 aa25.49■■□□□ 1.67
RPL28-209ENST00000560055 NPATQ14207 1427 aa25.48■■□□□ 1.67
RPL28-209ENST00000560055 HFM1A2PYH4 1435 aa25.47■■□□□ 1.67
RPL28-209ENST00000560055 PREX1Q8TCU6 1659 aa25.47■■□□□ 1.67
RPL28-209ENST00000560055 PZPP20742 1482 aa25.47■■□□□ 1.67
RPL28-209ENST00000560055 UNC13BO14795 1591 aa25.45■■□□□ 1.66
RPL28-209ENST00000560055 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.45■■□□□ 1.66
RPL28-209ENST00000560055 LMTK2Q8IWU2 1503 aa25.45■■□□□ 1.66
RPL28-209ENST00000560055 KANK1Q14678 1352 aa25.44■■□□□ 1.66
RPL28-209ENST00000560055 SETD1BQ9UPS6 1966 aaKnown RBP25.44■■□□□ 1.66
RPL28-209ENST00000560055 CEP152O94986 1710 aa25.44■■□□□ 1.66
RPL28-209ENST00000560055 GCC2Q8IWJ2 1684 aa25.43■■□□□ 1.66
RPL28-209ENST00000560055 CAMSAP1Q5T5Y3 1602 aa25.41■■□□□ 1.66
RPL28-209ENST00000560055 ARHGAP31Q2M1Z3 1444 aa25.41■■□□□ 1.66
RPL28-209ENST00000560055 FBXO31Q5XUX0 539 aaPredicted RBP25.38■■□□□ 1.65
RPL28-209ENST00000560055 UHRF1BP1Q6BDS2 1440 aa25.37■■□□□ 1.65
RPL28-209ENST00000560055 EFCAB6Q5THR3 1501 aa25.35■■□□□ 1.65
RPL28-209ENST00000560055 SPATA31D1Q6ZQQ2 1576 aa25.35■■□□□ 1.65
RPL28-209ENST00000560055 ERVK-7P63135 1459 aa25.34■■□□□ 1.65
RPL28-209ENST00000560055 IQGAP3Q86VI3 1631 aa25.34■■□□□ 1.65
RPL28-209ENST00000560055 NUP155O75694 1391 aa25.33■■□□□ 1.65
RPL28-209ENST00000560055 TNRQ92752 1358 aa25.33■■□□□ 1.65
RPL28-209ENST00000560055 STRCQ7RTU9 1775 aa25.32■■□□□ 1.64
RPL28-209ENST00000560055 MYO3AQ8NEV4 1616 aa25.31■■□□□ 1.64
RPL28-209ENST00000560055 TET3O43151 1660 aa25.31■■□□□ 1.64
RPL28-209ENST00000560055 RPRD2Q5VT52 1461 aaKnown RBP25.28■■□□□ 1.64
RPL28-209ENST00000560055 ZNF142P52746 1687 aaPredicted RBP25.27■■□□□ 1.64
RPL28-209ENST00000560055 FBXO41Q8TF61 875 aa25.26■■□□□ 1.63
RPL28-209ENST00000560055 NLRP1Q9C000 1473 aa25.26■■□□□ 1.63
RPL28-209ENST00000560055 CEP170BQ9Y4F5 1589 aaPredicted RBP25.26■■□□□ 1.63
RPL28-209ENST00000560055 NOS1P29475 1434 aa25.25■■□□□ 1.63
RPL28-209ENST00000560055 SETD5Q9C0A6 1442 aa25.25■■□□□ 1.63
RPL28-209ENST00000560055 A2ML1A8K2U0 1454 aa25.24■■□□□ 1.63
RPL28-209ENST00000560055 CFAP65Q6ZU64 1925 aaKnown RBP25.23■■□□□ 1.63
RPL28-209ENST00000560055 E9PCH4 1651 aa25.21■■□□□ 1.63
RPL28-209ENST00000560055 SYNMO15061 1565 aa25.19■■□□□ 1.62
RPL28-209ENST00000560055 RAB3GAP2Q9H2M9 1393 aa25.17■■□□□ 1.62
RPL28-209ENST00000560055 TRIM52Q96A61 297 aa25.16■■□□□ 1.62
RPL28-209ENST00000560055 CERKQ8TCT0 537 aa25.15■■□□□ 1.62
RPL28-209ENST00000560055 ACIN1Q9UKV3 1341 aaKnown RBP25.14■■□□□ 1.62
RPL28-209ENST00000560055 DMRT2Q9Y5R5 561 aa25.14■■□□□ 1.62
RPL28-209ENST00000560055 UGGT1Q9NYU2 1555 aa25.14■■□□□ 1.61
RPL28-209ENST00000560055 PLA2R1Q13018 1463 aa25.13■■□□□ 1.61
RPL28-209ENST00000560055 PTPRTO14522 1441 aa25.12■■□□□ 1.61
RPL28-209ENST00000560055 IDI1Q13907 227 aa25.11■■□□□ 1.61
RPL28-209ENST00000560055 SLC52A1Q9NWF4 448 aa25.11■■□□□ 1.61
RPL28-209ENST00000560055 SLC4A1APQ9BWU0 796 aaKnown RBP25.1■■□□□ 1.61
RPL28-209ENST00000560055 HRCP23327 699 aa25.09■■□□□ 1.61
RPL28-209ENST00000560055 UBR1Q8IWV7 1749 aa25.09■■□□□ 1.61
RPL28-209ENST00000560055 PIK3C2BO00750 1634 aa25.08■■□□□ 1.61
RPL28-209ENST00000560055 PKD2Q13563 968 aa25.08■■□□□ 1.61
RPL28-209ENST00000560055 THEMISQ8N1K5 641 aaPredicted RBP25.08■■□□□ 1.61
RPL28-209ENST00000560055 NCKAP5LQ9HCH0 1330 aa25.07■■□□□ 1.6
RPL28-209ENST00000560055 KDM5AP29375 1690 aaKnown RBP25.06■■□□□ 1.6
RPL28-209ENST00000560055 MPHOSPH9Q99550 1183 aa25.05■■□□□ 1.6
RPL28-209ENST00000560055 SPHKAPQ2M3C7 1700 aa25.05■■□□□ 1.6
RPL28-209ENST00000560055 ADGRB3O60242 1522 aa25.03■■□□□ 1.6
RPL28-209ENST00000560055 TRIM26Q12899 539 aaPredicted RBP25.03■■□□□ 1.6
RPL28-209ENST00000560055 TRPM2O94759 1503 aa25.02■■□□□ 1.6
RPL28-209ENST00000560055 ARHGAP23Q9P227 1491 aa25.02■■□□□ 1.6
RPL28-209ENST00000560055 SLIT1O75093 1534 aa25.01■■□□□ 1.59
RPL28-209ENST00000560055 LTBP4Q8N2S1 1624 aa24.98■■□□□ 1.59
RPL28-209ENST00000560055 TMEM131LA2VDJ0 1609 aa24.97■■□□□ 1.59
RPL28-209ENST00000560055 NEURL4Q96JN8 1562 aa24.97■■□□□ 1.59
RPL28-209ENST00000560055 TMEM2Q9UHN6 1383 aa24.97■■□□□ 1.59
RPL28-209ENST00000560055 FOXD1Q16676 465 aa24.97■■□□□ 1.59
RPL28-209ENST00000560055 STAG3Q9UJ98 1225 aa24.97■■□□□ 1.59
RPL28-209ENST00000560055 ANKLE2Q86XL3 938 aa24.96■■□□□ 1.59
RPL28-209ENST00000560055 CLTCL1P53675 1640 aa24.95■■□□□ 1.58
RPL28-209ENST00000560055 POLR1AO95602 1720 aaPredicted RBP24.95■■□□□ 1.58
RPL28-209ENST00000560055 MED14O60244 1454 aa24.94■■□□□ 1.58
RPL28-209ENST00000560055 SCAF11Q99590 1463 aaKnown RBP24.93■■□□□ 1.58
RPL28-209ENST00000560055 LTKP29376 864 aa24.92■■□□□ 1.58
RPL28-209ENST00000560055 MYO5BQ9ULV0 1848 aa24.91■■□□□ 1.58
RPL28-209ENST00000560055 ZNF335Q9H4Z2 1342 aaPredicted RBP24.9■■□□□ 1.58
RPL28-209ENST00000560055 ZFYVE9O95405 1425 aa24.9■■□□□ 1.58
RPL28-209ENST00000560055 TXNDC2Q86VQ3 553 aa24.89■■□□□ 1.58
RPL28-209ENST00000560055 NPHP4O75161 1426 aaPredicted RBP24.88■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms