RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 FOXD4L1Q9NU39 408 aa17.01■□□□□ 0.31
CSPG4P12-202ENST00000559989 ERCC4Q92889 916 aaPredicted RBP17.01■□□□□ 0.31
CSPG4P12-202ENST00000559989 PLCD4Q9BRC7 762 aa17.01■□□□□ 0.31
CSPG4P12-202ENST00000559989 CCDC66A2RUB6 948 aa17.01■□□□□ 0.31
CSPG4P12-202ENST00000559989 ZNF330Q9Y3S2 320 aaPredicted RBP17■□□□□ 0.31
CSPG4P12-202ENST00000559989 STK31Q9BXU1 1019 aa17■□□□□ 0.31
CSPG4P12-202ENST00000559989 NAP1L1P55209 391 aaKnown RBP17■□□□□ 0.31
CSPG4P12-202ENST00000559989 SRPK2P78362 688 aaKnown RBP16.99■□□□□ 0.31
CSPG4P12-202ENST00000559989 SYNE3Q6ZMZ3 975 aa16.99■□□□□ 0.31
CSPG4P12-202ENST00000559989 HSP90AB2PQ58FF8 381 aa16.99■□□□□ 0.31
CSPG4P12-202ENST00000559989 MTERF4Q7Z6M4 381 aaKnown RBP16.99■□□□□ 0.31
CSPG4P12-202ENST00000559989 FAM13BQ9NYF5 915 aa16.99■□□□□ 0.31
CSPG4P12-202ENST00000559989 TRIM29Q14134 588 aa16.98■□□□□ 0.31
CSPG4P12-202ENST00000559989 FRAT2O75474 233 aaPredicted RBP16.98■□□□□ 0.31
CSPG4P12-202ENST00000559989 FOXD4L5Q5VV16 416 aaPredicted RBP16.98■□□□□ 0.31
CSPG4P12-202ENST00000559989 FOXD4L4Q8WXT5 416 aaPredicted RBP16.98■□□□□ 0.31
CSPG4P12-202ENST00000559989 RCAN3Q9UKA8 241 aa16.98■□□□□ 0.31
CSPG4P12-202ENST00000559989 DDX49Q9Y6V7 483 aaKnown RBP16.98■□□□□ 0.31
CSPG4P12-202ENST00000559989 CTDP1Q9Y5B0 961 aaPredicted RBP16.98■□□□□ 0.31
CSPG4P12-202ENST00000559989 MNS1Q8NEH6 495 aa16.98■□□□□ 0.31
CSPG4P12-202ENST00000559989 KCNH8Q96L42 1107 aa16.97■□□□□ 0.31
CSPG4P12-202ENST00000559989 SOX12O15370 315 aa16.97■□□□□ 0.31
CSPG4P12-202ENST00000559989 KTN1Q86UP2 1357 aaKnown RBP16.97■□□□□ 0.31
CSPG4P12-202ENST00000559989 AMOTL1Q8IY63 956 aa16.97■□□□□ 0.31
CSPG4P12-202ENST00000559989 CHMP7Q8WUX9 453 aaPredicted RBP16.96■□□□□ 0.31
CSPG4P12-202ENST00000559989 PLEKHD1A6NEE1 506 aa16.96■□□□□ 0.31
CSPG4P12-202ENST00000559989 KANK1Q14678 1352 aa16.96■□□□□ 0.31
CSPG4P12-202ENST00000559989 HDGFL2Q7Z4V5 671 aaPredicted RBP16.95■□□□□ 0.3
CSPG4P12-202ENST00000559989 LRRFIP1Q32MZ4 808 aaKnown RBP16.95■□□□□ 0.3
CSPG4P12-202ENST00000559989 HSP90AB3PQ58FF7 597 aa16.95■□□□□ 0.3
CSPG4P12-202ENST00000559989 TRIM34Q9BYJ4 488 aa16.94■□□□□ 0.3
CSPG4P12-202ENST00000559989 INCENPQ9NQS7 918 aa16.94■□□□□ 0.3
CSPG4P12-202ENST00000559989 MCTP1Q6DN14 999 aa16.93■□□□□ 0.3
CSPG4P12-202ENST00000559989 LEKR1Q6ZMV7 388 aa16.93■□□□□ 0.3
CSPG4P12-202ENST00000559989 CCER2I3L3R5 266 aa16.93■□□□□ 0.3
CSPG4P12-202ENST00000559989 EPS15P42566 896 aa16.93■□□□□ 0.3
CSPG4P12-202ENST00000559989 GSE1Q14687 1217 aa16.93■□□□□ 0.3
CSPG4P12-202ENST00000559989 CPLX2Q6PUV4 134 aaKnown RBP16.92■□□□□ 0.3
CSPG4P12-202ENST00000559989 CAGE1Q8TC20 777 aa16.92■□□□□ 0.3
CSPG4P12-202ENST00000559989 ABCC9O60706 1549 aa16.92■□□□□ 0.3
CSPG4P12-202ENST00000559989 ANKRD18AQ8IVF6 992 aa16.91■□□□□ 0.3
CSPG4P12-202ENST00000559989 CCDC43Q96MW1 224 aaKnown RBP16.91■□□□□ 0.3
CSPG4P12-202ENST00000559989 DIAPH3Q9NSV4 1193 aa16.91■□□□□ 0.3
CSPG4P12-202ENST00000559989 GOLGA6L7A0A1B0GV03 622 aa16.91■□□□□ 0.3
CSPG4P12-202ENST00000559989 NOL10Q9BSC4 688 aaKnown RBP16.91■□□□□ 0.3
CSPG4P12-202ENST00000559989 CLIP1P30622 1438 aa16.9■□□□□ 0.3
CSPG4P12-202ENST00000559989 SMC4Q9NTJ3 1288 aa16.9■□□□□ 0.3
CSPG4P12-202ENST00000559989 CSB-PGBD3P0DP91 1061 aa16.9■□□□□ 0.3
CSPG4P12-202ENST00000559989 DYDC1Q8WWB3 177 aa16.89■□□□□ 0.3
CSPG4P12-202ENST00000559989 ZCCHC6Q5VYS8 1495 aaKnown RBP16.89■□□□□ 0.29
CSPG4P12-202ENST00000559989 SASS6Q6UVJ0 657 aa16.89■□□□□ 0.29
CSPG4P12-202ENST00000559989 ZFYVE27Q5T4F4 411 aa16.88■□□□□ 0.29
CSPG4P12-202ENST00000559989 TSPYL1Q9H0U9 437 aa16.88■□□□□ 0.29
CSPG4P12-202ENST00000559989 IFT57Q9NWB7 429 aa16.87■□□□□ 0.29
CSPG4P12-202ENST00000559989 ERLIN2O94905 339 aa16.86■□□□□ 0.29
CSPG4P12-202ENST00000559989 CFDP1Q9UEE9 299 aaPredicted RBP16.86■□□□□ 0.29
CSPG4P12-202ENST00000559989 R3HCC1Q9Y3T6 440 aaKnown RBP16.86■□□□□ 0.29
CSPG4P12-202ENST00000559989 SEPT7Q16181 437 aaKnown RBP16.86■□□□□ 0.29
CSPG4P12-202ENST00000559989 TIMELESSQ9UNS1 1208 aa16.86■□□□□ 0.29
CSPG4P12-202ENST00000559989 NEFHP12036 1026 aa16.85■□□□□ 0.29
CSPG4P12-202ENST00000559989 FAM43AQ8N2R8 423 aa16.85■□□□□ 0.29
CSPG4P12-202ENST00000559989 KIAA0754O94854 1291 aa16.85■□□□□ 0.29
CSPG4P12-202ENST00000559989 SLC4A10Q6U841 1118 aa16.85■□□□□ 0.29
CSPG4P12-202ENST00000559989 PAK3O75914 559 aaPredicted RBP16.85■□□□□ 0.29
CSPG4P12-202ENST00000559989 NAT10Q9H0A0 1025 aaKnown RBP16.85■□□□□ 0.29
CSPG4P12-202ENST00000559989 RILPL2Q969X0 211 aa16.84■□□□□ 0.29
CSPG4P12-202ENST00000559989 GOLGA6L10A6NI86 522 aa16.83■□□□□ 0.29
CSPG4P12-202ENST00000559989 LMOD3Q0VAK6 560 aa16.83■□□□□ 0.29
CSPG4P12-202ENST00000559989 U2AF1L5P0DN76 240 aaPredicted RBP16.83■□□□□ 0.28
CSPG4P12-202ENST00000559989 U2AF1Q01081 240 aaKnown RBP eCLIP16.83■□□□□ 0.28
CSPG4P12-202ENST00000559989 BICD2Q8TD16 824 aa16.83■□□□□ 0.28
CSPG4P12-202ENST00000559989 OLFM4Q6UX06 510 aa16.83■□□□□ 0.28
CSPG4P12-202ENST00000559989 CCP110O43303 1012 aa16.82■□□□□ 0.28
CSPG4P12-202ENST00000559989 FOXD4L6Q3SYB3 417 aaPredicted RBP16.82■□□□□ 0.28
CSPG4P12-202ENST00000559989 MEX3CQ5U5Q3 659 aaKnown RBP16.82■□□□□ 0.28
CSPG4P12-202ENST00000559989 FOXD4L3Q6VB84 417 aaPredicted RBP16.82■□□□□ 0.28
CSPG4P12-202ENST00000559989 RUFY2Q8WXA3 655 aa16.82■□□□□ 0.28
CSPG4P12-202ENST00000559989 GTF2E1P29083 439 aaPredicted RBP16.82■□□□□ 0.28
CSPG4P12-202ENST00000559989 OFD1O75665 1012 aa16.82■□□□□ 0.28
CSPG4P12-202ENST00000559989 USP8P40818 1118 aa16.81■□□□□ 0.28
CSPG4P12-202ENST00000559989 CWC22Q9HCG8 908 aaKnown RBP16.81■□□□□ 0.28
CSPG4P12-202ENST00000559989 RALBP1Q15311 655 aa16.81■□□□□ 0.28
CSPG4P12-202ENST00000559989 CLASRPQ8N2M8 674 aaKnown RBP16.81■□□□□ 0.28
CSPG4P12-202ENST00000559989 CCDC39Q9UFE4 941 aa16.81■□□□□ 0.28
CSPG4P12-202ENST00000559989 DCAF11Q8TEB1 546 aa16.8■□□□□ 0.28
CSPG4P12-202ENST00000559989 EZRP15311 586 aaKnown RBP16.8■□□□□ 0.28
CSPG4P12-202ENST00000559989 RAD21O60216 631 aa16.8■□□□□ 0.28
CSPG4P12-202ENST00000559989 SKIDA1Q1XH10 827 aa16.79■□□□□ 0.28
CSPG4P12-202ENST00000559989 EIF3AQ14152 1382 aaKnown RBP16.79■□□□□ 0.28
CSPG4P12-202ENST00000559989 WWC2Q6AWC2 1192 aa16.79■□□□□ 0.28
CSPG4P12-202ENST00000559989 ENOX2Q16206 610 aaKnown RBP16.79■□□□□ 0.28
CSPG4P12-202ENST00000559989 ERICH2A1L162 156 aa16.79■□□□□ 0.28
CSPG4P12-202ENST00000559989 AXDND1Q5T1B0 1012 aaPredicted RBP16.79■□□□□ 0.28
CSPG4P12-202ENST00000559989 CT47B1P0C2W7 299 aaPredicted RBP16.78■□□□□ 0.28
CSPG4P12-202ENST00000559989 CPLX1O14810 134 aa16.78■□□□□ 0.28
CSPG4P12-202ENST00000559989 ANKRD62A6NC57 917 aa16.78■□□□□ 0.28
CSPG4P12-202ENST00000559989 SMARCE1Q969G3 411 aa16.77■□□□□ 0.28
CSPG4P12-202ENST00000559989 CENPJQ9HC77 1338 aaPredicted RBP16.77■□□□□ 0.28
CSPG4P12-202ENST00000559989 PAF1Q8N7H5 531 aa16.77■□□□□ 0.28
CSPG4P12-202ENST00000559989 SEPT11Q9NVA2 429 aaKnown RBP16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms