RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 LMTK3Q96Q04 1460 aa15.91■□□□□ 0.14
USP3-207ENST00000558218 ATP7AQ04656 1500 aa15.91■□□□□ 0.14
USP3-207ENST00000558218 CNTLNQ9NXG0 1405 aa15.91■□□□□ 0.14
USP3-207ENST00000558218 INO80Q9ULG1 1556 aaPredicted RBP15.89■□□□□ 0.13
USP3-207ENST00000558218 A2MP01023 1474 aa15.89■□□□□ 0.13
USP3-207ENST00000558218 TSPY4P0CV99 314 aa15.88■□□□□ 0.13
USP3-207ENST00000558218 TSPY10P0CW01 314 aa15.88■□□□□ 0.13
USP3-207ENST00000558218 CEBPAP49715 358 aaPredicted RBP15.88■□□□□ 0.13
USP3-207ENST00000558218 KANK4Q5T7N3 995 aaPredicted RBP15.88■□□□□ 0.13
USP3-207ENST00000558218 MIA2Q96PC5 1412 aa15.86■□□□□ 0.13
USP3-207ENST00000558218 CCDC141Q6ZP82 1450 aa15.85■□□□□ 0.13
USP3-207ENST00000558218 PLXNC1O60486 1568 aa15.85■□□□□ 0.13
USP3-207ENST00000558218 ADGBQ8N7X0 1667 aa15.85■□□□□ 0.13
USP3-207ENST00000558218 DHX29Q7Z478 1369 aaKnown RBP15.85■□□□□ 0.13
USP3-207ENST00000558218 CAMSAP2Q08AD1 1489 aa15.84■□□□□ 0.13
USP3-207ENST00000558218 ARHGEF5Q12774 1597 aa15.83■□□□□ 0.13
USP3-207ENST00000558218 HSPA2P54652 639 aa15.82■□□□□ 0.12
USP3-207ENST00000558218 ZMYM3Q14202 1370 aa15.82■□□□□ 0.12
USP3-207ENST00000558218 MYOM3Q5VTT5 1437 aa15.82■□□□□ 0.12
USP3-207ENST00000558218 PREX1Q8TCU6 1659 aa15.82■□□□□ 0.12
USP3-207ENST00000558218 NPATQ14207 1427 aa15.81■□□□□ 0.12
USP3-207ENST00000558218 GGT6Q6P531 493 aa15.81■□□□□ 0.12
USP3-207ENST00000558218 MROH2AA6NES4 1674 aa15.8■□□□□ 0.12
USP3-207ENST00000558218 C3P01024 1663 aa15.8■□□□□ 0.12
USP3-207ENST00000558218 UHRF1BP1Q6BDS2 1440 aa15.8■□□□□ 0.12
USP3-207ENST00000558218 KIF3BO15066 747 aa15.77■□□□□ 0.12
USP3-207ENST00000558218 MAST1Q9Y2H9 1570 aa15.75■□□□□ 0.11
USP3-207ENST00000558218 FAM135AQ9P2D6 1515 aa15.75■□□□□ 0.11
USP3-207ENST00000558218 CLTCQ00610 1675 aaKnown RBP15.72■□□□□ 0.11
USP3-207ENST00000558218 WASHC2CQ9Y4E1 1318 aa15.71■□□□□ 0.11
USP3-207ENST00000558218 PTPRKQ15262 1439 aa15.71■□□□□ 0.11
USP3-207ENST00000558218 FBXO41Q8TF61 875 aa15.7■□□□□ 0.1
USP3-207ENST00000558218 FGD6Q6ZV73 1430 aa15.68■□□□□ 0.1
USP3-207ENST00000558218 TCOF1Q13428 1488 aaKnown RBP15.68■□□□□ 0.1
USP3-207ENST00000558218 SHANK2Q9UPX8 1470 aa15.68■□□□□ 0.1
USP3-207ENST00000558218 PTPN23Q9H3S7 1636 aa15.68■□□□□ 0.1
USP3-207ENST00000558218 PTPRTO14522 1441 aa15.68■□□□□ 0.1
USP3-207ENST00000558218 ABCC5O15440 1437 aa15.68■□□□□ 0.1
USP3-207ENST00000558218 STRCQ7RTU9 1775 aa15.67■□□□□ 0.1
USP3-207ENST00000558218 KDM5DQ9BY66 1539 aa15.66■□□□□ 0.1
USP3-207ENST00000558218 DUOX2Q9NRD8 1548 aa15.66■□□□□ 0.1
USP3-207ENST00000558218 EIF2AK4Q9P2K8 1649 aaKnown RBP15.65■□□□□ 0.1
USP3-207ENST00000558218 POTEHQ6S545 545 aa15.65■□□□□ 0.1
USP3-207ENST00000558218 PZPP20742 1482 aa15.65■□□□□ 0.1
USP3-207ENST00000558218 DAPK1P53355 1430 aa15.64■□□□□ 0.09
USP3-207ENST00000558218 PKD2Q13563 968 aa15.64■□□□□ 0.09
USP3-207ENST00000558218 NCOA1Q15788 1441 aa15.64■□□□□ 0.09
USP3-207ENST00000558218 CERKQ8TCT0 537 aa15.63■□□□□ 0.09
USP3-207ENST00000558218 RNF17Q9BXT8 1623 aaKnown RBP15.63■□□□□ 0.09
USP3-207ENST00000558218 DNMT1P26358 1616 aaKnown RBP15.62■□□□□ 0.09
USP3-207ENST00000558218 RRP7BPQ9NSQ0 103 aa15.62■□□□□ 0.09
USP3-207ENST00000558218 PLA2R1Q13018 1463 aa15.62■□□□□ 0.09
USP3-207ENST00000558218 TNRQ92752 1358 aa15.62■□□□□ 0.09
USP3-207ENST00000558218 ANKRD30AQ9BXX3 1397 aa15.62■□□□□ 0.09
USP3-207ENST00000558218 KIF15Q9NS87 1388 aa15.62■□□□□ 0.09
USP3-207ENST00000558218 ERBINQ96RT1 1412 aa15.61■□□□□ 0.09
USP3-207ENST00000558218 FBXO31Q5XUX0 539 aaPredicted RBP15.61■□□□□ 0.09
USP3-207ENST00000558218 CAMSAP1Q5T5Y3 1602 aa15.61■□□□□ 0.09
USP3-207ENST00000558218 ZNF142P52746 1687 aaPredicted RBP15.6■□□□□ 0.09
USP3-207ENST00000558218 A2ML1A8K2U0 1454 aa15.6■□□□□ 0.09
USP3-207ENST00000558218 CEP170BQ9Y4F5 1589 aaPredicted RBP15.6■□□□□ 0.09
USP3-207ENST00000558218 MYO3AQ8NEV4 1616 aa15.6■□□□□ 0.09
USP3-207ENST00000558218 CROCC2H7BZ55 1655 aa15.6■□□□□ 0.09
USP3-207ENST00000558218 ZC3H13Q5T200 1668 aaKnown RBP15.6■□□□□ 0.09
USP3-207ENST00000558218 THEMISQ8N1K5 641 aaPredicted RBP15.58■□□□□ 0.08
USP3-207ENST00000558218 NLRP1Q9C000 1473 aa15.58■□□□□ 0.08
USP3-207ENST00000558218 ABCC3O15438 1527 aa15.58■□□□□ 0.08
USP3-207ENST00000558218 FAM50AQ14320 339 aaKnown RBP15.56■□□□□ 0.08
USP3-207ENST00000558218 ZBTB12Q9Y330 459 aaPredicted RBP15.56■□□□□ 0.08
USP3-207ENST00000558218 ARHGAP31Q2M1Z3 1444 aa15.56■□□□□ 0.08
USP3-207ENST00000558218 ADGRL2O95490 1459 aa15.55■□□□□ 0.08
USP3-207ENST00000558218 KANK1Q14678 1352 aa15.55■□□□□ 0.08
USP3-207ENST00000558218 NCKAP5LQ9HCH0 1330 aa15.55■□□□□ 0.08
USP3-207ENST00000558218 CHIC2Q9UKJ5 165 aa15.55■□□□□ 0.08
USP3-207ENST00000558218 MROH1Q8NDA8 1641 aa15.54■□□□□ 0.08
USP3-207ENST00000558218 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.53■□□□□ 0.08
USP3-207ENST00000558218 ANKLE2Q86XL3 938 aa15.53■□□□□ 0.08
USP3-207ENST00000558218 SPATA31D1Q6ZQQ2 1576 aa15.53■□□□□ 0.08
USP3-207ENST00000558218 PRDM15P57071 1507 aaPredicted RBP15.53■□□□□ 0.08
USP3-207ENST00000558218 DEPDC5O75140 1603 aa15.51■□□□□ 0.07
USP3-207ENST00000558218 MKRN4PQ13434 485 aaPredicted RBP15.51■□□□□ 0.07
USP3-207ENST00000558218 ERVK-7P63135 1459 aa15.5■□□□□ 0.07
USP3-207ENST00000558218 UGGT1Q9NYU2 1555 aa15.49■□□□□ 0.07
USP3-207ENST00000558218 LMTK2Q8IWU2 1503 aa15.49■□□□□ 0.07
USP3-207ENST00000558218 IQSEC2Q5JU85 1478 aa15.49■□□□□ 0.07
USP3-207ENST00000558218 LTBP4Q8N2S1 1624 aa15.49■□□□□ 0.07
USP3-207ENST00000558218 ANKRD50Q9ULJ7 1429 aa15.49■□□□□ 0.07
USP3-207ENST00000558218 ROCK1Q13464 1354 aa15.49■□□□□ 0.07
USP3-207ENST00000558218 CEP152O94986 1710 aa15.48■□□□□ 0.07
USP3-207ENST00000558218 VWDEQ8N2E2 1590 aa15.47■□□□□ 0.07
USP3-207ENST00000558218 CFAP65Q6ZU64 1925 aaKnown RBP15.46■□□□□ 0.07
USP3-207ENST00000558218 MED14O60244 1454 aa15.46■□□□□ 0.06
USP3-207ENST00000558218 SOCS7O14512 581 aa15.45■□□□□ 0.06
USP3-207ENST00000558218 ZNF335Q9H4Z2 1342 aaPredicted RBP15.43■□□□□ 0.06
USP3-207ENST00000558218 POLR1AO95602 1720 aaPredicted RBP15.43■□□□□ 0.06
USP3-207ENST00000558218 SLC52A1Q9NWF4 448 aa15.43■□□□□ 0.06
USP3-207ENST00000558218 RPRD2Q5VT52 1461 aaKnown RBP15.42■□□□□ 0.06
USP3-207ENST00000558218 RBM42Q9BTD8 480 aaKnown RBP15.42■□□□□ 0.06
USP3-207ENST00000558218 NPHP4O75161 1426 aaPredicted RBP15.41■□□□□ 0.06
USP3-207ENST00000558218 NEURL4Q96JN8 1562 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms