RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 CROCC2H7BZ55 1655 aa18.47■□□□□ 0.55
VRK1-204ENST00000555351 STRCQ7RTU9 1775 aa18.45■□□□□ 0.54
VRK1-204ENST00000555351 DUOX2Q9NRD8 1548 aa18.45■□□□□ 0.54
VRK1-204ENST00000555351 ZNF142P52746 1687 aaPredicted RBP18.45■□□□□ 0.54
VRK1-204ENST00000555351 DNMT1P26358 1616 aaKnown RBP18.45■□□□□ 0.54
VRK1-204ENST00000555351 ABCC5O15440 1437 aa18.44■□□□□ 0.54
VRK1-204ENST00000555351 ZC3H13Q5T200 1668 aaKnown RBP18.43■□□□□ 0.54
VRK1-204ENST00000555351 MYO3AQ8NEV4 1616 aa18.42■□□□□ 0.54
VRK1-204ENST00000555351 PZPP20742 1482 aa18.42■□□□□ 0.54
VRK1-204ENST00000555351 PTPRTO14522 1441 aa18.41■□□□□ 0.54
VRK1-204ENST00000555351 DAPK1P53355 1430 aa18.41■□□□□ 0.54
VRK1-204ENST00000555351 ILDR1Q86SU0 546 aaPredicted RBP18.41■□□□□ 0.54
VRK1-204ENST00000555351 WASHC2CQ9Y4E1 1318 aa18.41■□□□□ 0.54
VRK1-204ENST00000555351 NCOA1Q15788 1441 aa18.4■□□□□ 0.54
VRK1-204ENST00000555351 ERBINQ96RT1 1412 aa18.4■□□□□ 0.54
VRK1-204ENST00000555351 CEP170BQ9Y4F5 1589 aaPredicted RBP18.39■□□□□ 0.53
VRK1-204ENST00000555351 PLA2R1Q13018 1463 aa18.39■□□□□ 0.53
VRK1-204ENST00000555351 KIF15Q9NS87 1388 aa18.38■□□□□ 0.53
VRK1-204ENST00000555351 ABCC3O15438 1527 aa18.37■□□□□ 0.53
VRK1-204ENST00000555351 CAMSAP1Q5T5Y3 1602 aa18.37■□□□□ 0.53
VRK1-204ENST00000555351 MROH1Q8NDA8 1641 aa18.37■□□□□ 0.53
VRK1-204ENST00000555351 A2ML1A8K2U0 1454 aa18.36■□□□□ 0.53
VRK1-204ENST00000555351 FBXO41Q8TF61 875 aa18.36■□□□□ 0.53
VRK1-204ENST00000555351 ANKRD30AQ9BXX3 1397 aa18.35■□□□□ 0.53
VRK1-204ENST00000555351 PRDM15P57071 1507 aaPredicted RBP18.34■□□□□ 0.53
VRK1-204ENST00000555351 ADGRL2O95490 1459 aa18.34■□□□□ 0.53
VRK1-204ENST00000555351 TNRQ92752 1358 aa18.34■□□□□ 0.53
VRK1-204ENST00000555351 NLRP1Q9C000 1473 aa18.33■□□□□ 0.53
VRK1-204ENST00000555351 PKD2Q13563 968 aa18.33■□□□□ 0.52
VRK1-204ENST00000555351 DEPDC5O75140 1603 aa18.33■□□□□ 0.52
VRK1-204ENST00000555351 SPATA31D1Q6ZQQ2 1576 aa18.31■□□□□ 0.52
VRK1-204ENST00000555351 FBXO31Q5XUX0 539 aaPredicted RBP18.3■□□□□ 0.52
VRK1-204ENST00000555351 RRP7BPQ9NSQ0 103 aa18.3■□□□□ 0.52
VRK1-204ENST00000555351 ARHGAP31Q2M1Z3 1444 aa18.3■□□□□ 0.52
VRK1-204ENST00000555351 CERKQ8TCT0 537 aa18.29■□□□□ 0.52
VRK1-204ENST00000555351 CEP152O94986 1710 aa18.28■□□□□ 0.52
VRK1-204ENST00000555351 KANK1Q14678 1352 aa18.27■□□□□ 0.51
VRK1-204ENST00000555351 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.27■□□□□ 0.51
VRK1-204ENST00000555351 ERVK-7P63135 1459 aa18.26■□□□□ 0.51
VRK1-204ENST00000555351 FAM50AQ14320 339 aaKnown RBP18.26■□□□□ 0.51
VRK1-204ENST00000555351 LMTK2Q8IWU2 1503 aa18.26■□□□□ 0.51
VRK1-204ENST00000555351 VWDEQ8N2E2 1590 aa18.25■□□□□ 0.51
VRK1-204ENST00000555351 THEMISQ8N1K5 641 aaPredicted RBP18.25■□□□□ 0.51
VRK1-204ENST00000555351 CHIC2Q9UKJ5 165 aa18.24■□□□□ 0.51
VRK1-204ENST00000555351 UGGT1Q9NYU2 1555 aa18.24■□□□□ 0.51
VRK1-204ENST00000555351 NCKAP5LQ9HCH0 1330 aa18.23■□□□□ 0.51
VRK1-204ENST00000555351 IQSEC2Q5JU85 1478 aa18.23■□□□□ 0.51
VRK1-204ENST00000555351 POLR1AO95602 1720 aaPredicted RBP18.23■□□□□ 0.51
VRK1-204ENST00000555351 LTBP4Q8N2S1 1624 aa18.23■□□□□ 0.51
VRK1-204ENST00000555351 ROCK1Q13464 1354 aa18.22■□□□□ 0.51
VRK1-204ENST00000555351 ANKRD50Q9ULJ7 1429 aa18.21■□□□□ 0.51
VRK1-204ENST00000555351 MED14O60244 1454 aa18.19■□□□□ 0.5
VRK1-204ENST00000555351 NEURL4Q96JN8 1562 aa18.18■□□□□ 0.5
VRK1-204ENST00000555351 ANKLE2Q86XL3 938 aa18.18■□□□□ 0.5
VRK1-204ENST00000555351 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.17■□□□□ 0.5
VRK1-204ENST00000555351 EFCAB6Q5THR3 1501 aa18.17■□□□□ 0.5
VRK1-204ENST00000555351 KDM5AP29375 1690 aaKnown RBP18.16■□□□□ 0.5
VRK1-204ENST00000555351 UBR1Q8IWV7 1749 aa18.16■□□□□ 0.5
VRK1-204ENST00000555351 RPRD2Q5VT52 1461 aaKnown RBP18.15■□□□□ 0.5
VRK1-204ENST00000555351 UNC13BO14795 1591 aa18.14■□□□□ 0.49
VRK1-204ENST00000555351 CFAP65Q6ZU64 1925 aaKnown RBP18.12■□□□□ 0.49
VRK1-204ENST00000555351 NOS1P29475 1434 aa18.12■□□□□ 0.49
VRK1-204ENST00000555351 RRBP1Q9P2E9 1410 aaKnown RBP18.12■□□□□ 0.49
VRK1-204ENST00000555351 ARHGAP23Q9P227 1491 aa18.12■□□□□ 0.49
VRK1-204ENST00000555351 SLIT1O75093 1534 aa18.12■□□□□ 0.49
VRK1-204ENST00000555351 TET3O43151 1660 aa18.12■□□□□ 0.49
VRK1-204ENST00000555351 NPHP4O75161 1426 aaPredicted RBP18.11■□□□□ 0.49
VRK1-204ENST00000555351 ZNF335Q9H4Z2 1342 aaPredicted RBP18.1■□□□□ 0.49
VRK1-204ENST00000555351 IQGAP1P46940 1657 aa18.09■□□□□ 0.49
VRK1-204ENST00000555351 GCC2Q8IWJ2 1684 aa18.09■□□□□ 0.49
VRK1-204ENST00000555351 PIK3C2BO00750 1634 aa18.09■□□□□ 0.49
VRK1-204ENST00000555351 SYNMO15061 1565 aa18.08■□□□□ 0.49
VRK1-204ENST00000555351 CPS1P31327 1500 aa18.08■□□□□ 0.49
VRK1-204ENST00000555351 SLC52A1Q9NWF4 448 aa18.08■□□□□ 0.48
VRK1-204ENST00000555351 IQGAP3Q86VI3 1631 aa18.07■□□□□ 0.48
VRK1-204ENST00000555351 SCAF11Q99590 1463 aaKnown RBP18.07■□□□□ 0.48
VRK1-204ENST00000555351 TMEM2Q9UHN6 1383 aa18.04■□□□□ 0.48
VRK1-204ENST00000555351 IDI1Q13907 227 aa18.04■□□□□ 0.48
VRK1-204ENST00000555351 PPARGC1BQ86YN6 1023 aaKnown RBP18.04■□□□□ 0.48
VRK1-204ENST00000555351 EID1Q9Y6B2 187 aa18.03■□□□□ 0.48
VRK1-204ENST00000555351 ADGRB3O60242 1522 aa18.03■□□□□ 0.48
VRK1-204ENST00000555351 TXNDC2Q86VQ3 553 aa18.01■□□□□ 0.47
VRK1-204ENST00000555351 STAG3Q9UJ98 1225 aa18.01■□□□□ 0.47
VRK1-204ENST00000555351 E9PCH4 1651 aa18■□□□□ 0.47
VRK1-204ENST00000555351 LTKP29376 864 aa18■□□□□ 0.47
VRK1-204ENST00000555351 ITGAEP38570 1179 aa18■□□□□ 0.47
VRK1-204ENST00000555351 NUP155O75694 1391 aa17.99■□□□□ 0.47
VRK1-204ENST00000555351 TMEM131LA2VDJ0 1609 aa17.95■□□□□ 0.46
VRK1-204ENST00000555351 NAIPQ13075 1403 aa17.95■□□□□ 0.46
VRK1-204ENST00000555351 UBAP1LF5GYI3 381 aa17.94■□□□□ 0.46
VRK1-204ENST00000555351 HDGFP51858 240 aaKnown RBP17.94■□□□□ 0.46
VRK1-204ENST00000555351 HFM1A2PYH4 1435 aa17.93■□□□□ 0.46
VRK1-204ENST00000555351 STRCP1A6NGW2 1772 aa17.93■□□□□ 0.46
VRK1-204ENST00000555351 ZFYVE9O95405 1425 aa17.92■□□□□ 0.46
VRK1-204ENST00000555351 LRRC7Q96NW7 1537 aa17.92■□□□□ 0.46
VRK1-204ENST00000555351 TOM1O60784 492 aa17.9■□□□□ 0.46
VRK1-204ENST00000555351 MYO5BQ9ULV0 1848 aa17.89■□□□□ 0.45
VRK1-204ENST00000555351 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.89■□□□□ 0.45
VRK1-204ENST00000555351 PLEKHG1Q9ULL1 1385 aa17.89■□□□□ 0.45
VRK1-204ENST00000555351 SPHKAPQ2M3C7 1700 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms