RNA–Protein interactions for RNA: ENST00000555038.5

ARHGEF40-204, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-204ENST00000555038 TRAPPC8Q9Y2L5 1435 aa29.43■■■□□ 2.3
ARHGEF40-204ENST00000555038 PRKRIP1Q9H875 184 aaPredicted RBP29.41■■■□□ 2.3
ARHGEF40-204ENST00000555038 BCORL1Q5H9F3 1711 aa29.41■■■□□ 2.3
ARHGEF40-204ENST00000555038 ZNF326Q5BKZ1 582 aaKnown RBP29.41■■■□□ 2.3
ARHGEF40-204ENST00000555038 ROCK2O75116 1388 aaKnown RBP29.41■■■□□ 2.3
ARHGEF40-204ENST00000555038 PLA2R1Q13018 1463 aa29.41■■■□□ 2.3
ARHGEF40-204ENST00000555038 ZFYVE16Q7Z3T8 1539 aa29.39■■■□□ 2.3
ARHGEF40-204ENST00000555038 CARD11Q9BXL7 1154 aa29.37■■■□□ 2.29
ARHGEF40-204ENST00000555038 SPAG9O60271 1321 aaKnown RBP29.36■■■□□ 2.29
ARHGEF40-204ENST00000555038 DCAF11Q8TEB1 546 aa29.36■■■□□ 2.29
ARHGEF40-204ENST00000555038 PRAG1Q86YV5 1406 aa29.35■■■□□ 2.29
ARHGEF40-204ENST00000555038 TRPM1Q7Z4N2 1603 aa29.34■■■□□ 2.29
ARHGEF40-204ENST00000555038 LAMC1P11047 1609 aa29.34■■■□□ 2.29
ARHGEF40-204ENST00000555038 FANCAO15360 1455 aa29.33■■■□□ 2.29
ARHGEF40-204ENST00000555038 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.32■■■□□ 2.282e-7■■□□□ 11.8
ARHGEF40-204ENST00000555038 INO80Q9ULG1 1556 aaPredicted RBP29.32■■■□□ 2.28
ARHGEF40-204ENST00000555038 DEPDC5O75140 1603 aa29.31■■■□□ 2.28
ARHGEF40-204ENST00000555038 EIF2AK4Q9P2K8 1649 aaKnown RBP29.31■■■□□ 2.28
ARHGEF40-204ENST00000555038 GPRASP1Q5JY77 1395 aa29.29■■■□□ 2.28
ARHGEF40-204ENST00000555038 A2MP01023 1474 aa29.29■■■□□ 2.28
ARHGEF40-204ENST00000555038 DHX29Q7Z478 1369 aaKnown RBP29.28■■■□□ 2.28
ARHGEF40-204ENST00000555038 KDM2AQ9Y2K7 1162 aa29.28■■■□□ 2.28
ARHGEF40-204ENST00000555038 ATP7AQ04656 1500 aa29.27■■■□□ 2.28
ARHGEF40-204ENST00000555038 ASXL2Q76L83 1435 aa29.27■■■□□ 2.28
ARHGEF40-204ENST00000555038 HNRNPUQ00839 825 aaKnown RBP eCLIP29.23■■■□□ 2.27
ARHGEF40-204ENST00000555038 ADGRL1O94910 1474 aa29.23■■■□□ 2.27
ARHGEF40-204ENST00000555038 AFAP1Q8N556 730 aa29.21■■■□□ 2.27
ARHGEF40-204ENST00000555038 TRPM2O94759 1503 aa29.2■■■□□ 2.27
ARHGEF40-204ENST00000555038 E9PCH4 1651 aa29.2■■■□□ 2.27
ARHGEF40-204ENST00000555038 TET3O43151 1660 aa29.2■■■□□ 2.26
ARHGEF40-204ENST00000555038 VWDEQ8N2E2 1590 aa29.2■■■□□ 2.26
ARHGEF40-204ENST00000555038 NEFLP07196 543 aa29.19■■■□□ 2.26
ARHGEF40-204ENST00000555038 MRS2Q9HD23 443 aa29.19■■■□□ 2.26
ARHGEF40-204ENST00000555038 ST20-MTHFSA0A0A6YYL1 179 aa29.18■■■□□ 2.26
ARHGEF40-204ENST00000555038 PRDM15P57071 1507 aaPredicted RBP29.18■■■□□ 2.26
ARHGEF40-204ENST00000555038 PTPRTO14522 1441 aa29.17■■■□□ 2.26
ARHGEF40-204ENST00000555038 SCAPERQ9BY12 1400 aa29.17■■■□□ 2.26
ARHGEF40-204ENST00000555038 STAC3Q96MF2 364 aa29.17■■■□□ 2.26
ARHGEF40-204ENST00000555038 KTN1Q86UP2 1357 aaKnown RBP29.17■■■□□ 2.26
ARHGEF40-204ENST00000555038 KANK1Q14678 1352 aa29.16■■■□□ 2.26
ARHGEF40-204ENST00000555038 CFAP74Q9C0B2 1584 aa29.16■■■□□ 2.26
ARHGEF40-204ENST00000555038 SPHKAPQ2M3C7 1700 aa29.15■■■□□ 2.26
ARHGEF40-204ENST00000555038 CCDC184Q52MB2 194 aa29.13■■■□□ 2.25
ARHGEF40-204ENST00000555038 NEURL4Q96JN8 1562 aa29.13■■■□□ 2.25
ARHGEF40-204ENST00000555038 NPM1P06748 294 aaKnown RBP eCLIP29.13■■■□□ 2.25
ARHGEF40-204ENST00000555038 RGL3Q3MIN7 710 aa29.13■■■□□ 2.25
ARHGEF40-204ENST00000555038 CEP152O94986 1710 aa29.12■■■□□ 2.25
ARHGEF40-204ENST00000555038 RNF17Q9BXT8 1623 aaKnown RBP29.12■■■□□ 2.25
ARHGEF40-204ENST00000555038 DNAJC5Q9H3Z4 198 aa29.12■■■□□ 2.25
ARHGEF40-204ENST00000555038 FKBP8Q14318 412 aa29.1■■■□□ 2.25
ARHGEF40-204ENST00000555038 ZNF518AQ6AHZ1 1483 aa29.09■■■□□ 2.25
ARHGEF40-204ENST00000555038 ZBED9Q6R2W3 1325 aa29.08■■■□□ 2.25
ARHGEF40-204ENST00000555038 POLR3GLQ9BT43 218 aa29.08■■■□□ 2.25
ARHGEF40-204ENST00000555038 COL17A1Q9UMD9 1497 aaPredicted RBP29.05■■■□□ 2.24
ARHGEF40-204ENST00000555038 RIMBP3CA6NJZ7 1639 aa29.05■■■□□ 2.24
ARHGEF40-204ENST00000555038 RIMBP3BA6NNM3 1639 aa29.05■■■□□ 2.24
ARHGEF40-204ENST00000555038 RIMBP3Q9UFD9 1639 aa29.05■■■□□ 2.24
ARHGEF40-204ENST00000555038 KIDINS220Q9ULH0 1771 aa29.04■■■□□ 2.24
ARHGEF40-204ENST00000555038 MROH1Q8NDA8 1641 aa29.04■■■□□ 2.24
ARHGEF40-204ENST00000555038 MADDQ8WXG6 1647 aa29.04■■■□□ 2.24
ARHGEF40-204ENST00000555038 FAM9BQ8IZU0 186 aa29.03■■■□□ 2.24
ARHGEF40-204ENST00000555038 NBPF1Q3BBV0 1214 aa29.03■■■□□ 2.24
ARHGEF40-204ENST00000555038 CLTCL1P53675 1640 aa29.03■■■□□ 2.24
ARHGEF40-204ENST00000555038 LMTK2Q8IWU2 1503 aa29.01■■■□□ 2.23
ARHGEF40-204ENST00000555038 RALBP1Q15311 655 aa29.01■■■□□ 2.23
ARHGEF40-204ENST00000555038 CD109Q6YHK3 1445 aa28.99■■■□□ 2.23
ARHGEF40-204ENST00000555038 KIF3BO15066 747 aa28.98■■■□□ 2.23
ARHGEF40-204ENST00000555038 POGZQ7Z3K3 1410 aa28.97■■■□□ 2.23
ARHGEF40-204ENST00000555038 MLH3Q9UHC1 1453 aa28.97■■■□□ 2.23
ARHGEF40-204ENST00000555038 EFCAB6Q5THR3 1501 aa28.96■■■□□ 2.23
ARHGEF40-204ENST00000555038 TESK2Q96S53 571 aa28.96■■■□□ 2.23
ARHGEF40-204ENST00000555038 WASHC2CQ9Y4E1 1318 aa28.95■■■□□ 2.23
ARHGEF40-204ENST00000555038 MYT1LQ9UL68 1186 aa28.95■■■□□ 2.22
ARHGEF40-204ENST00000555038 BRD4O60885 1362 aaPredicted RBP28.95■■■□□ 2.22
ARHGEF40-204ENST00000555038 KIAA1210Q9ULL0 1709 aa28.95■■■□□ 2.22
ARHGEF40-204ENST00000555038 IQGAP1P46940 1657 aa28.94■■■□□ 2.22
ARHGEF40-204ENST00000555038 MYBBP1AQ9BQG0 1328 aaKnown RBP28.93■■■□□ 2.22
ARHGEF40-204ENST00000555038 ERICH6BQ5W0A0 696 aa28.92■■■□□ 2.22
ARHGEF40-204ENST00000555038 TMF1P82094 1093 aa28.91■■■□□ 2.22
ARHGEF40-204ENST00000555038 NEO1Q92859 1461 aa28.9■■■□□ 2.22
ARHGEF40-204ENST00000555038 HECW2Q9P2P5 1572 aa28.9■■■□□ 2.22
ARHGEF40-204ENST00000555038 MYOM2P54296 1465 aa28.88■■■□□ 2.21
ARHGEF40-204ENST00000555038 SCAF11Q99590 1463 aaKnown RBP28.87■■■□□ 2.21
ARHGEF40-204ENST00000555038 TMC1Q8TDI8 760 aa28.87■■■□□ 2.21
ARHGEF40-204ENST00000555038 PNISRQ8TF01 805 aaKnown RBP28.87■■■□□ 2.21
ARHGEF40-204ENST00000555038 PARD3Q8TEW0 1356 aa28.87■■■□□ 2.21
ARHGEF40-204ENST00000555038 DISP3Q9P2K9 1392 aa28.87■■■□□ 2.21
ARHGEF40-204ENST00000555038 PPRC1Q5VV67 1664 aaKnown RBP28.86■■■□□ 2.21
ARHGEF40-204ENST00000555038 KIF1BO60333 1816 aa28.85■■■□□ 2.21
ARHGEF40-204ENST00000555038 LRPPRCP42704 1394 aaKnown RBP28.84■■■□□ 2.21
ARHGEF40-204ENST00000555038 BCANQ96GW7 911 aa28.83■■■□□ 2.21
ARHGEF40-204ENST00000555038 PER1O15534 1290 aaPredicted RBP28.83■■■□□ 2.21
ARHGEF40-204ENST00000555038 FRMPD1Q5SYB0 1578 aa28.82■■■□□ 2.2
ARHGEF40-204ENST00000555038 MAP3K4Q9Y6R4 1608 aa28.81■■■□□ 2.2
ARHGEF40-204ENST00000555038 EIF3AQ14152 1382 aaKnown RBP28.8■■■□□ 2.2
ARHGEF40-204ENST00000555038 SMG6Q86US8 1419 aaKnown RBP28.8■■■□□ 2.2
ARHGEF40-204ENST00000555038 CDCA8Q53HL2 280 aa28.8■■■□□ 2.2
ARHGEF40-204ENST00000555038 NLRP13Q86W25 1043 aa28.8■■■□□ 2.2
ARHGEF40-204ENST00000555038 IFT172Q9UG01 1749 aa28.79■■■□□ 2.2
ARHGEF40-204ENST00000555038 SLC24A1O60721 1099 aa28.78■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms