RNA–Protein interactions for RNA: ENST00000555002.5

SYNE2-216, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 11,532 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-216ENST00000555002 VSIG10Q8N0Z9 540 aa8.52□□□□□ -1.05
SYNE2-216ENST00000555002 NAP1L1P55209 391 aaKnown RBP8.52□□□□□ -1.05
SYNE2-216ENST00000555002 ZNF592Q92610 1267 aa8.52□□□□□ -1.05
SYNE2-216ENST00000555002 TMEM132AQ24JP5 1023 aa8.52□□□□□ -1.05
SYNE2-216ENST00000555002 NGEFQ8N5V2 710 aa8.52□□□□□ -1.05
SYNE2-216ENST00000555002 HMMRO75330 724 aa8.51□□□□□ -1.05
SYNE2-216ENST00000555002 VPS37DQ86XT2 251 aa8.51□□□□□ -1.05
SYNE2-216ENST00000555002 RWDD1Q9H446 243 aaPredicted RBP8.51□□□□□ -1.05
SYNE2-216ENST00000555002 GGT6Q6P531 493 aa8.51□□□□□ -1.05
SYNE2-216ENST00000555002 AEBP2Q6ZN18 517 aaPredicted RBP8.51□□□□□ -1.05
SYNE2-216ENST00000555002 AMOTL1Q8IY63 956 aa8.51□□□□□ -1.05
SYNE2-216ENST00000555002 EVA1CP58658 441 aa8.51□□□□□ -1.05
SYNE2-216ENST00000555002 NUTM2DQ5VT03 806 aaPredicted RBP8.51□□□□□ -1.05
SYNE2-216ENST00000555002 DCAF8L1A6NGE4 600 aa8.51□□□□□ -1.05
SYNE2-216ENST00000555002 ODF2Q5BJF6 829 aa8.5□□□□□ -1.05
SYNE2-216ENST00000555002 GOLGA6L3A6NEY3 463 aa8.5□□□□□ -1.05
SYNE2-216ENST00000555002 CCNB3Q8WWL7 1395 aa8.5□□□□□ -1.05
SYNE2-216ENST00000555002 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.5□□□□□ -1.05
SYNE2-216ENST00000555002 KTN1Q86UP2 1357 aaKnown RBP8.5□□□□□ -1.05
SYNE2-216ENST00000555002 NUTM2FA1L443 756 aa8.5□□□□□ -1.05
SYNE2-216ENST00000555002 SYTL4Q96C24 671 aaPredicted RBP8.5□□□□□ -1.05
SYNE2-216ENST00000555002 APPP05067 770 aa8.49□□□□□ -1.05
SYNE2-216ENST00000555002 ZFYVE27Q5T4F4 411 aa8.49□□□□□ -1.05
SYNE2-216ENST00000555002 NGDNQ8NEJ9 315 aaKnown RBP8.49□□□□□ -1.05
SYNE2-216ENST00000555002 SMC4Q9NTJ3 1288 aa8.49□□□□□ -1.05
SYNE2-216ENST00000555002 SYNE3Q6ZMZ3 975 aa8.49□□□□□ -1.05
SYNE2-216ENST00000555002 FAM184AQ8NB25 1140 aa8.49□□□□□ -1.05
SYNE2-216ENST00000555002 AMPHP49418 695 aa8.49□□□□□ -1.05
SYNE2-216ENST00000555002 BCL11BQ9C0K0 894 aaPredicted RBP8.49□□□□□ -1.05
SYNE2-216ENST00000555002 CCDC146Q8IYE0 955 aa8.48□□□□□ -1.05
SYNE2-216ENST00000555002 FYB1O15117 783 aa8.48□□□□□ -1.05
SYNE2-216ENST00000555002 RILPL2Q969X0 211 aa8.48□□□□□ -1.05
SYNE2-216ENST00000555002 SIN3AQ96ST3 1273 aa8.48□□□□□ -1.05
SYNE2-216ENST00000555002 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.48□□□□□ -1.05
SYNE2-216ENST00000555002 GOLGA6L19H0YKK7 550 aa8.48□□□□□ -1.05
SYNE2-216ENST00000555002 R3HCC1Q9Y3T6 440 aaKnown RBP8.48□□□□□ -1.05
SYNE2-216ENST00000555002 ZNF771Q7L3S4 317 aaPredicted RBP8.48□□□□□ -1.05
SYNE2-216ENST00000555002 HSP90AB2PQ58FF8 381 aa8.47□□□□□ -1.05
SYNE2-216ENST00000555002 NFXL1Q6ZNB6 911 aa8.47□□□□□ -1.05
SYNE2-216ENST00000555002 MTMR7Q9Y216 660 aa8.46□□□□□ -1.05
SYNE2-216ENST00000555002 IPO7O95373 1038 aaKnown RBP8.46□□□□□ -1.05
SYNE2-216ENST00000555002 EPS15P42566 896 aa8.46□□□□□ -1.05
SYNE2-216ENST00000555002 BECN2A8MW95 431 aa8.46□□□□□ -1.05
SYNE2-216ENST00000555002 KIF3AQ9Y496 699 aa8.46□□□□□ -1.05
SYNE2-216ENST00000555002 DCAF1Q9Y4B6 1507 aa8.46□□□□□ -1.06
SYNE2-216ENST00000555002 ST18O60284 1047 aa8.46□□□□□ -1.06
SYNE2-216ENST00000555002 CCAR1Q8IX12 1150 aaKnown RBP8.46□□□□□ -1.06
SYNE2-216ENST00000555002 ROCK2O75116 1388 aaKnown RBP8.46□□□□□ -1.06
SYNE2-216ENST00000555002 TRIM29Q14134 588 aa8.46□□□□□ -1.06
SYNE2-216ENST00000555002 ANKRD20A12PQ8NF67 263 aa8.46□□□□□ -1.06
SYNE2-216ENST00000555002 EID1Q9Y6B2 187 aa8.45□□□□□ -1.06
SYNE2-216ENST00000555002 KDM4AO75164 1064 aa8.45□□□□□ -1.06
SYNE2-216ENST00000555002 GPS2Q13227 327 aa8.45□□□□□ -1.06
SYNE2-216ENST00000555002 HDAC5Q9UQL6 1122 aa8.45□□□□□ -1.06
SYNE2-216ENST00000555002 TCERG1O14776 1098 aaKnown RBP8.45□□□□□ -1.06
SYNE2-216ENST00000555002 RUFY1Q96T51 708 aa8.45□□□□□ -1.06
SYNE2-216ENST00000555002 CLUAP1Q96AJ1 413 aa8.45□□□□□ -1.06
SYNE2-216ENST00000555002 C1orf141Q5JVX7 400 aa8.45□□□□□ -1.06
SYNE2-216ENST00000555002 CCDC47Q96A33 483 aaKnown RBP8.45□□□□□ -1.06
SYNE2-216ENST00000555002 ANO2Q9NQ90 1003 aa8.44□□□□□ -1.06
SYNE2-216ENST00000555002 AK7Q96M32 723 aa8.44□□□□□ -1.06
SYNE2-216ENST00000555002 PPP1R1BQ9UD71 204 aaPredicted RBP8.44□□□□□ -1.06
SYNE2-216ENST00000555002 SKIDA1Q1XH10 827 aa8.44□□□□□ -1.06
SYNE2-216ENST00000555002 SLC4A3P48751 1232 aa8.44□□□□□ -1.06
SYNE2-216ENST00000555002 PPM1FP49593 454 aaPredicted RBP8.44□□□□□ -1.06
SYNE2-216ENST00000555002 RCAN3Q9UKA8 241 aa8.44□□□□□ -1.06
SYNE2-216ENST00000555002 FOXD1Q16676 465 aa8.43□□□□□ -1.06
SYNE2-216ENST00000555002 PLCD4Q9BRC7 762 aa8.43□□□□□ -1.06
SYNE2-216ENST00000555002 RBM33Q96EV2 1170 aaKnown RBP8.43□□□□□ -1.06
SYNE2-216ENST00000555002 IBSPP21815 317 aaPredicted RBP8.43□□□□□ -1.06
SYNE2-216ENST00000555002 CHMP4AQ9BY43 222 aa8.43□□□□□ -1.06
SYNE2-216ENST00000555002 DIAPH3Q9NSV4 1193 aa8.43□□□□□ -1.06
SYNE2-216ENST00000555002 MAP7D2Q96T17 732 aa8.43□□□□□ -1.06
SYNE2-216ENST00000555002 CPLX1O14810 134 aa8.43□□□□□ -1.06
SYNE2-216ENST00000555002 HOMER1Q86YM7 354 aa8.43□□□□□ -1.06
SYNE2-216ENST00000555002 IKQ13123 557 aaPredicted RBP8.42□□□□□ -1.06
SYNE2-216ENST00000555002 NECTIN2Q92692 538 aa8.42□□□□□ -1.06
SYNE2-216ENST00000555002 EIF3AQ14152 1382 aaKnown RBP8.42□□□□□ -1.06
SYNE2-216ENST00000555002 TTLL5Q6EMB2 1281 aa8.42□□□□□ -1.06
SYNE2-216ENST00000555002 CAGE1Q8TC20 777 aa8.42□□□□□ -1.06
SYNE2-216ENST00000555002 RRP7AQ9Y3A4 280 aaKnown RBP8.42□□□□□ -1.06
SYNE2-216ENST00000555002 PMFBP1Q8TBY8 1022 aa8.42□□□□□ -1.06
SYNE2-216ENST00000555002 TTC5Q8N0Z6 440 aa8.41□□□□□ -1.06
SYNE2-216ENST00000555002 CCDC97Q96F63 343 aaPredicted RBP8.41□□□□□ -1.06
SYNE2-216ENST00000555002 WWC2Q6AWC2 1192 aa8.41□□□□□ -1.06
SYNE2-216ENST00000555002 EIF2S2P20042 333 aaKnown RBP8.4□□□□□ -1.06
SYNE2-216ENST00000555002 CCDC27Q2M243 656 aa8.4□□□□□ -1.06
SYNE2-216ENST00000555002 HOOK1Q9UJC3 728 aaKnown RBP8.4□□□□□ -1.06
SYNE2-216ENST00000555002 TEX35Q5T0J7 233 aa8.4□□□□□ -1.06
SYNE2-216ENST00000555002 RDXP35241 583 aaKnown RBP8.4□□□□□ -1.07
SYNE2-216ENST00000555002 TERF2IPQ9NYB0 399 aa8.4□□□□□ -1.07
SYNE2-216ENST00000555002 LMOD3Q0VAK6 560 aa8.4□□□□□ -1.07
SYNE2-216ENST00000555002 C9orf78Q9NZ63 289 aaPredicted RBP8.39□□□□□ -1.07
SYNE2-216ENST00000555002 HSP90AA2PQ14568 343 aaPredicted RBP8.39□□□□□ -1.07
SYNE2-216ENST00000555002 OFD1O75665 1012 aa8.39□□□□□ -1.07
SYNE2-216ENST00000555002 GOLGA3Q08378 1498 aa8.39□□□□□ -1.07
SYNE2-216ENST00000555002 DHX37Q8IY37 1157 aaKnown RBP8.39□□□□□ -1.07
SYNE2-216ENST00000555002 PDILTQ8N807 584 aa8.39□□□□□ -1.07
SYNE2-216ENST00000555002 CENPJQ9HC77 1338 aaPredicted RBP8.39□□□□□ -1.07
SYNE2-216ENST00000555002 BICD2Q8TD16 824 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms