RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 CLASP1Q7Z460 1538 aa16.72■□□□□ 0.27
SHMT2-207ENST00000553837 RALGAPBQ86X10 1494 aa16.72■□□□□ 0.27
SHMT2-207ENST00000553837 MAST1Q9Y2H9 1570 aa16.71■□□□□ 0.27
SHMT2-207ENST00000553837 MYO5CQ9NQX4 1742 aa16.71■□□□□ 0.27
SHMT2-207ENST00000553837 KDM2AQ9Y2K7 1162 aa16.71■□□□□ 0.27
SHMT2-207ENST00000553837 DHX29Q7Z478 1369 aaKnown RBP16.7■□□□□ 0.26
SHMT2-207ENST00000553837 ZCCHC11Q5TAX3 1644 aaKnown RBP16.69■□□□□ 0.26
SHMT2-207ENST00000553837 PLA2R1Q13018 1463 aa16.68■□□□□ 0.26
SHMT2-207ENST00000553837 DCAF11Q8TEB1 546 aa16.68■□□□□ 0.26
SHMT2-207ENST00000553837 UNC13BO14795 1591 aa16.68■□□□□ 0.26
SHMT2-207ENST00000553837 MRS2Q9HD23 443 aa16.67■□□□□ 0.26
SHMT2-207ENST00000553837 PLEKHH2Q8IVE3 1493 aa16.67■□□□□ 0.26
SHMT2-207ENST00000553837 POLR3GLQ9BT43 218 aa16.67■□□□□ 0.26
SHMT2-207ENST00000553837 PPP4R2Q9NY27 417 aa16.67■□□□□ 0.26
SHMT2-207ENST00000553837 FAM9BQ8IZU0 186 aa16.66■□□□□ 0.26
SHMT2-207ENST00000553837 CARD11Q9BXL7 1154 aa16.66■□□□□ 0.26
SHMT2-207ENST00000553837 PLXNC1O60486 1568 aa16.66■□□□□ 0.26
SHMT2-207ENST00000553837 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.65■□□□□ 0.26
SHMT2-207ENST00000553837 PLCH2O75038 1416 aa16.65■□□□□ 0.26
SHMT2-207ENST00000553837 UHRF1BP1LA0JNW5 1464 aa16.64■□□□□ 0.25
SHMT2-207ENST00000553837 CNGB1Q14028 1251 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-207ENST00000553837 ST20-MTHFSA0A0A6YYL1 179 aa16.62■□□□□ 0.25
SHMT2-207ENST00000553837 IRX6P78412 446 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-207ENST00000553837 IQGAP3Q86VI3 1631 aa16.61■□□□□ 0.25
SHMT2-207ENST00000553837 CCDC144AA2RUR9 1427 aa16.61■□□□□ 0.25
SHMT2-207ENST00000553837 TRAPPC8Q9Y2L5 1435 aa16.61■□□□□ 0.25
SHMT2-207ENST00000553837 ARID4BQ4LE39 1312 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-207ENST00000553837 DUOX2Q9NRD8 1548 aa16.6■□□□□ 0.25
SHMT2-207ENST00000553837 RGL3Q3MIN7 710 aa16.6■□□□□ 0.25
SHMT2-207ENST00000553837 PRAG1Q86YV5 1406 aa16.6■□□□□ 0.25
SHMT2-207ENST00000553837 ABCC1P33527 1531 aa16.6■□□□□ 0.25
SHMT2-207ENST00000553837 TRPM1Q7Z4N2 1603 aa16.59■□□□□ 0.25
SHMT2-207ENST00000553837 A2MP01023 1474 aa16.59■□□□□ 0.25
SHMT2-207ENST00000553837 MAGI2Q86UL8 1455 aa16.59■□□□□ 0.25
SHMT2-207ENST00000553837 EFCAB2Q5VUJ9 269 aa16.58■□□□□ 0.25
SHMT2-207ENST00000553837 ROCK2O75116 1388 aaKnown RBP16.58■□□□□ 0.24
SHMT2-207ENST00000553837 NBPF1Q3BBV0 1214 aa16.58■□□□□ 0.24
SHMT2-207ENST00000553837 NOP58Q9Y2X3 529 aaKnown RBP16.58■□□□□ 0.24
SHMT2-207ENST00000553837 ERBINQ96RT1 1412 aa16.56■□□□□ 0.24
SHMT2-207ENST00000553837 ZBED9Q6R2W3 1325 aa16.55■□□□□ 0.24
SHMT2-207ENST00000553837 AFAP1Q8N556 730 aa16.54■□□□□ 0.24
SHMT2-207ENST00000553837 ATP10AO60312 1499 aa16.52■□□□□ 0.24
SHMT2-207ENST00000553837 E9PCH4 1651 aa16.52■□□□□ 0.23
SHMT2-207ENST00000553837 GPRASP1Q5JY77 1395 aa16.51■□□□□ 0.23
SHMT2-207ENST00000553837 SALL2Q9Y467 1007 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-207ENST00000553837 ZFYVE16Q7Z3T8 1539 aa16.5■□□□□ 0.23
SHMT2-207ENST00000553837 SPAG9O60271 1321 aaKnown RBP16.49■□□□□ 0.23
SHMT2-207ENST00000553837 NBR1Q14596 966 aa16.49■□□□□ 0.23
SHMT2-207ENST00000553837 RIMBP3CA6NJZ7 1639 aa16.48■□□□□ 0.23
SHMT2-207ENST00000553837 RIMBP3BA6NNM3 1639 aa16.48■□□□□ 0.23
SHMT2-207ENST00000553837 RIMBP3Q9UFD9 1639 aa16.48■□□□□ 0.23
SHMT2-207ENST00000553837 WDR7Q9Y4E6 1490 aa16.48■□□□□ 0.23
SHMT2-207ENST00000553837 SENP3-EIF4A1A0A087X0R7 540 aa16.48■□□□□ 0.23
SHMT2-207ENST00000553837 PNISRQ8TF01 805 aaKnown RBP16.48■□□□□ 0.23
SHMT2-207ENST00000553837 ARAP3Q8WWN8 1544 aa16.48■□□□□ 0.23
SHMT2-207ENST00000553837 PRDM15P57071 1507 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-207ENST00000553837 B4GALNT3Q6L9W6 998 aa16.46■□□□□ 0.23
SHMT2-207ENST00000553837 TESK2Q96S53 571 aa16.46■□□□□ 0.23
SHMT2-207ENST00000553837 RTEL1-TNFRSF6BF6WH68 1400 aa16.46■□□□□ 0.23
SHMT2-207ENST00000553837 LAMC1P11047 1609 aa16.45■□□□□ 0.22
SHMT2-207ENST00000553837 DISP3Q9P2K9 1392 aa16.45■□□□□ 0.22
SHMT2-207ENST00000553837 ABCA9Q8IUA7 1624 aa16.45■□□□□ 0.22
SHMT2-207ENST00000553837 EIF5BO60841 1220 aaKnown RBP16.44■□□□□ 0.22
SHMT2-207ENST00000553837 PAK3O75914 559 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-207ENST00000553837 RTL5Q5HYW3 569 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-207ENST00000553837 FANCAO15360 1455 aa16.43■□□□□ 0.22
SHMT2-207ENST00000553837 COL17A1Q9UMD9 1497 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-207ENST00000553837 DEPDC5O75140 1603 aa16.42■□□□□ 0.22
SHMT2-207ENST00000553837 PER1O15534 1290 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-207ENST00000553837 SLC24A1O60721 1099 aa16.42■□□□□ 0.22
SHMT2-207ENST00000553837 TMC1Q8TDI8 760 aa16.42■□□□□ 0.22
SHMT2-207ENST00000553837 INO80Q9ULG1 1556 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-207ENST00000553837 EIF2AK4Q9P2K8 1649 aaKnown RBP16.42■□□□□ 0.22
SHMT2-207ENST00000553837 MYBBP1AQ9BQG0 1328 aaKnown RBP16.41■□□□□ 0.22
SHMT2-207ENST00000553837 ATP7AQ04656 1500 aa16.41■□□□□ 0.22
SHMT2-207ENST00000553837 ANP32AP39687 249 aaKnown RBP16.41■□□□□ 0.22
SHMT2-207ENST00000553837 IPO9Q96P70 1041 aaKnown RBP16.41■□□□□ 0.22
SHMT2-207ENST00000553837 RNF17Q9BXT8 1623 aaKnown RBP16.41■□□□□ 0.22
SHMT2-207ENST00000553837 SMG6Q86US8 1419 aaKnown RBP16.4■□□□□ 0.22
SHMT2-207ENST00000553837 LRPPRCP42704 1394 aaKnown RBP16.4■□□□□ 0.22
SHMT2-207ENST00000553837 TRPM2O94759 1503 aa16.4■□□□□ 0.22
SHMT2-207ENST00000553837 RALBP1Q15311 655 aa16.4■□□□□ 0.22
SHMT2-207ENST00000553837 PTPRTO14522 1441 aa16.4■□□□□ 0.22
SHMT2-207ENST00000553837 ASXL2Q76L83 1435 aa16.39■□□□□ 0.21
SHMT2-207ENST00000553837 BRD4O60885 1362 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-207ENST00000553837 CLTCL1P53675 1640 aa16.39■□□□□ 0.21
SHMT2-207ENST00000553837 MADDQ8WXG6 1647 aa16.39■□□□□ 0.21
SHMT2-207ENST00000553837 SCAPERQ9BY12 1400 aa16.39■□□□□ 0.21
SHMT2-207ENST00000553837 ZBTB47Q9UFB7 747 aaPredicted RBP16.38■□□□□ 0.21
SHMT2-207ENST00000553837 PARD3Q8TEW0 1356 aa16.38■□□□□ 0.21
SHMT2-207ENST00000553837 SPHKAPQ2M3C7 1700 aa16.38■□□□□ 0.21
SHMT2-207ENST00000553837 ADGRL1O94910 1474 aa16.38■□□□□ 0.21
SHMT2-207ENST00000553837 VWDEQ8N2E2 1590 aa16.38■□□□□ 0.21
SHMT2-207ENST00000553837 KTN1Q86UP2 1357 aaKnown RBP16.37■□□□□ 0.21
SHMT2-207ENST00000553837 CEP152O94986 1710 aa16.37■□□□□ 0.21
SHMT2-207ENST00000553837 TET3O43151 1660 aa16.36■□□□□ 0.21
SHMT2-207ENST00000553837 MROH1Q8NDA8 1641 aa16.36■□□□□ 0.21
SHMT2-207ENST00000553837 KIF3BO15066 747 aa16.36■□□□□ 0.21
SHMT2-207ENST00000553837 NUDCQ9Y266 331 aa16.36■□□□□ 0.21
SHMT2-207ENST00000553837 PANK3Q9H999 370 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms