RNA–Protein interactions for RNA: ENST00000553039.1

CKAP4-203, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 4

Gene CKAP4, Length 573 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-203ENST00000553039 SAMD9Q5K651 1589 aa8.56□□□□□ -1.04
CKAP4-203ENST00000553039 WASHC2CQ9Y4E1 1318 aa8.56□□□□□ -1.04
CKAP4-203ENST00000553039 LRRC7Q96NW7 1537 aa8.56□□□□□ -1.04
CKAP4-203ENST00000553039 MED14O60244 1454 aa8.55□□□□□ -1.04
CKAP4-203ENST00000553039 TROQ12816 1431 aaPredicted RBP8.54□□□□□ -1.04
CKAP4-203ENST00000553039 FAM135AQ9P2D6 1515 aa8.54□□□□□ -1.04
CKAP4-203ENST00000553039 JCADQ9P266 1359 aa8.54□□□□□ -1.04
CKAP4-203ENST00000553039 TXNDC2Q86VQ3 553 aa8.54□□□□□ -1.04
CKAP4-203ENST00000553039 PROSER2Q86WR7 435 aaPredicted RBP8.54□□□□□ -1.04
CKAP4-203ENST00000553039 SLAIN2Q9P270 581 aa8.54□□□□□ -1.04
CKAP4-203ENST00000553039 EID1Q9Y6B2 187 aa8.54□□□□□ -1.04
CKAP4-203ENST00000553039 MIA2Q96PC5 1412 aa8.54□□□□□ -1.04
CKAP4-203ENST00000553039 SPATA31A6Q5VVP1 1343 aa8.54□□□□□ -1.04
CKAP4-203ENST00000553039 MROH2AA6NES4 1674 aa8.53□□□□□ -1.04
CKAP4-203ENST00000553039 FMN1Q68DA7 1419 aa8.53□□□□□ -1.04
CKAP4-203ENST00000553039 DNMT1P26358 1616 aaKnown RBP8.52□□□□□ -1.05
CKAP4-203ENST00000553039 ALKQ9UM73 1620 aa8.52□□□□□ -1.05
CKAP4-203ENST00000553039 KIF3BO15066 747 aa8.52□□□□□ -1.05
CKAP4-203ENST00000553039 CFDP1Q9UEE9 299 aaPredicted RBP8.52□□□□□ -1.05
CKAP4-203ENST00000553039 CDK13Q14004 1512 aaKnown RBP8.52□□□□□ -1.05
CKAP4-203ENST00000553039 VWDEQ8N2E2 1590 aa8.52□□□□□ -1.05
CKAP4-203ENST00000553039 A2MP01023 1474 aa8.51□□□□□ -1.05
CKAP4-203ENST00000553039 NUTM2BA6NNL0 878 aaPredicted RBP8.51□□□□□ -1.05
CKAP4-203ENST00000553039 NUTM2EB1AL46 878 aaPredicted RBP8.51□□□□□ -1.05
CKAP4-203ENST00000553039 KCNA6P17658 529 aa8.51□□□□□ -1.05
CKAP4-203ENST00000553039 NUTM2DQ5VT03 806 aaPredicted RBP8.51□□□□□ -1.05
CKAP4-203ENST00000553039 NUTM2AQ8IVF1 878 aaPredicted RBP8.51□□□□□ -1.05
CKAP4-203ENST00000553039 ABCA6Q8N139 1617 aa8.51□□□□□ -1.05
CKAP4-203ENST00000553039 ZNF142P52746 1687 aaPredicted RBP8.5□□□□□ -1.05
CKAP4-203ENST00000553039 SUPT6HQ7KZ85 1726 aaKnown RBP8.5□□□□□ -1.05
CKAP4-203ENST00000553039 CCDC125Q86Z20 511 aa8.5□□□□□ -1.05
CKAP4-203ENST00000553039 RBM33Q96EV2 1170 aaKnown RBP8.5□□□□□ -1.05
CKAP4-203ENST00000553039 MYO5CQ9NQX4 1742 aa8.5□□□□□ -1.05
CKAP4-203ENST00000553039 MYO3AQ8NEV4 1616 aa8.5□□□□□ -1.05
CKAP4-203ENST00000553039 NLRP1Q9C000 1473 aa8.5□□□□□ -1.05
CKAP4-203ENST00000553039 UBTFP17480 764 aaKnown RBP8.49□□□□□ -1.05
CKAP4-203ENST00000553039 RBM6P78332 1123 aaKnown RBP8.49□□□□□ -1.05
CKAP4-203ENST00000553039 NGLY1Q96IV0 654 aa8.49□□□□□ -1.05
CKAP4-203ENST00000553039 QTRT2Q9H974 415 aaKnown RBP8.49□□□□□ -1.05
CKAP4-203ENST00000553039 DHX29Q7Z478 1369 aaKnown RBP8.48□□□□□ -1.05
CKAP4-203ENST00000553039 RSPH4AQ5TD94 716 aa8.48□□□□□ -1.05
CKAP4-203ENST00000553039 ABCC1P33527 1531 aa8.48□□□□□ -1.05
CKAP4-203ENST00000553039 KDM5DQ9BY66 1539 aa8.48□□□□□ -1.05
CKAP4-203ENST00000553039 KIAA1107Q9UPP5 1409 aa8.47□□□□□ -1.05
CKAP4-203ENST00000553039 ATF5Q9Y2D1 282 aaPredicted RBP8.47□□□□□ -1.05
CKAP4-203ENST00000553039 UGGT1Q9NYU2 1555 aa8.47□□□□□ -1.05
CKAP4-203ENST00000553039 TMEM94Q12767 1356 aa8.47□□□□□ -1.05
CKAP4-203ENST00000553039 KIF14Q15058 1648 aa8.47□□□□□ -1.05
CKAP4-203ENST00000553039 KIDINS220Q9ULH0 1771 aa8.46□□□□□ -1.05
CKAP4-203ENST00000553039 LTKP29376 864 aa8.46□□□□□ -1.06
CKAP4-203ENST00000553039 STAG3Q9UJ98 1225 aa8.46□□□□□ -1.06
CKAP4-203ENST00000553039 FBXO3Q9UK99 471 aa8.46□□□□□ -1.06
CKAP4-203ENST00000553039 NEURL4Q96JN8 1562 aa8.46□□□□□ -1.06
CKAP4-203ENST00000553039 CLTCQ00610 1675 aaKnown RBP8.46□□□□□ -1.06
CKAP4-203ENST00000553039 PLEKHH2Q8IVE3 1493 aa8.45□□□□□ -1.06
CKAP4-203ENST00000553039 CDK12Q9NYV4 1490 aaPredicted RBP8.45□□□□□ -1.06
CKAP4-203ENST00000553039 RNF17Q9BXT8 1623 aaKnown RBP8.45□□□□□ -1.06
CKAP4-203ENST00000553039 MSH6P52701 1360 aa8.45□□□□□ -1.06
CKAP4-203ENST00000553039 PZPP20742 1482 aa8.45□□□□□ -1.06
CKAP4-203ENST00000553039 DEPDC5O75140 1603 aa8.44□□□□□ -1.06
CKAP4-203ENST00000553039 BCANQ96GW7 911 aa8.44□□□□□ -1.06
CKAP4-203ENST00000553039 SAMD9LQ8IVG5 1584 aa8.44□□□□□ -1.06
CKAP4-203ENST00000553039 AFF2P51816 1311 aa8.43□□□□□ -1.06
CKAP4-203ENST00000553039 FGD6Q6ZV73 1430 aa8.43□□□□□ -1.06
CKAP4-203ENST00000553039 TSPY4P0CV99 314 aa8.42□□□□□ -1.06
CKAP4-203ENST00000553039 TSPY10P0CW01 314 aa8.42□□□□□ -1.06
CKAP4-203ENST00000553039 HDGFP51858 240 aaKnown RBP8.42□□□□□ -1.06
CKAP4-203ENST00000553039 SAMD1Q6SPF0 538 aaPredicted RBP8.42□□□□□ -1.06
CKAP4-203ENST00000553039 C14orf37Q86TY3 774 aa8.42□□□□□ -1.06
CKAP4-203ENST00000553039 ATAD2Q6PL18 1390 aa8.42□□□□□ -1.06
CKAP4-203ENST00000553039 RTEL1-TNFRSF6BF6WH68 1400 aa8.42□□□□□ -1.06
CKAP4-203ENST00000553039 LRRC9Q6ZRR7 1453 aa8.42□□□□□ -1.06
CKAP4-203ENST00000553039 POLR1AO95602 1720 aaPredicted RBP8.41□□□□□ -1.06
CKAP4-203ENST00000553039 SYNMO15061 1565 aa8.41□□□□□ -1.06
CKAP4-203ENST00000553039 EEA1Q15075 1411 aa8.41□□□□□ -1.06
CKAP4-203ENST00000553039 ATF3P18847 181 aa8.41□□□□□ -1.06
CKAP4-203ENST00000553039 CADPS2Q86UW7 1296 aa8.41□□□□□ -1.06
CKAP4-203ENST00000553039 SLC26A8Q96RN1 970 aa8.41□□□□□ -1.06
CKAP4-203ENST00000553039 ATP7AQ04656 1500 aa8.4□□□□□ -1.06
CKAP4-203ENST00000553039 SCAF11Q99590 1463 aaKnown RBP8.4□□□□□ -1.06
CKAP4-203ENST00000553039 CCNB3Q8WWL7 1395 aa8.4□□□□□ -1.06
CKAP4-203ENST00000553039 LRRC59Q96AG4 307 aaKnown RBP8.4□□□□□ -1.06
CKAP4-203ENST00000553039 IQGAP1P46940 1657 aa8.4□□□□□ -1.07
CKAP4-203ENST00000553039 C8orf37Q96NL8 207 aa8.39□□□□□ -1.07
CKAP4-203ENST00000553039 C19orf44Q9H6X5 657 aa8.39□□□□□ -1.07
CKAP4-203ENST00000553039 SETD1AO15047 1707 aaKnown RBP8.39□□□□□ -1.07
CKAP4-203ENST00000553039 CDC42BPBQ9Y5S2 1711 aa8.39□□□□□ -1.07
CKAP4-203ENST00000553039 GPATCH8Q9UKJ3 1502 aaKnown RBP8.39□□□□□ -1.07
CKAP4-203ENST00000553039 SRCAPQ6ZRS2 3230 aa8.38□□□□□ -1.07
CKAP4-203ENST00000553039 ITSN2Q9NZM3 1697 aa8.37□□□□□ -1.07
CKAP4-203ENST00000553039 PLXNC1O60486 1568 aa8.37□□□□□ -1.07
CKAP4-203ENST00000553039 SF3B2Q13435 895 aaKnown RBP8.37□□□□□ -1.07
CKAP4-203ENST00000553039 IFFO2Q5TF58 517 aa8.37□□□□□ -1.07
CKAP4-203ENST00000553039 TRPC5Q9UL62 973 aaPredicted RBP8.37□□□□□ -1.07
CKAP4-203ENST00000553039 CCDC18Q5T9S5 1454 aa8.37□□□□□ -1.07
CKAP4-203ENST00000553039 ZNF644Q9H582 1327 aaPredicted RBP8.36□□□□□ -1.07
CKAP4-203ENST00000553039 VSIG10Q8N0Z9 540 aa8.36□□□□□ -1.07
CKAP4-203ENST00000553039 PROM2Q8N271 834 aa8.36□□□□□ -1.07
CKAP4-203ENST00000553039 TMEM2Q9UHN6 1383 aa8.35□□□□□ -1.07
CKAP4-203ENST00000553039 SYCP2Q9BX26 1530 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms