RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 DEPDC5O75140 1603 aa31.74■■■□□ 2.67
VPS29-206ENST00000549578 PCGF6Q9BYE7 350 aa31.72■■■□□ 2.67
VPS29-206ENST00000549578 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.71■■■□□ 2.67
VPS29-206ENST00000549578 PRDM15P57071 1507 aaPredicted RBP31.69■■■□□ 2.66
VPS29-206ENST00000549578 RAB3GAP2Q9H2M9 1393 aa31.69■■■□□ 2.66
VPS29-206ENST00000549578 UNC13BO14795 1591 aa31.69■■■□□ 2.66
VPS29-206ENST00000549578 ADAMTSL3P82987 1691 aa31.69■■■□□ 2.66
VPS29-206ENST00000549578 MADDQ8WXG6 1647 aa31.66■■■□□ 2.66
VPS29-206ENST00000549578 FER1L4A9Z1Z3 1794 aa31.65■■■□□ 2.66
VPS29-206ENST00000549578 KDM5DQ9BY66 1539 aa31.62■■■□□ 2.65
VPS29-206ENST00000549578 KANK1Q14678 1352 aa31.62■■■□□ 2.65
VPS29-206ENST00000549578 PPP6R1Q9UPN7 881 aa31.61■■■□□ 2.65
VPS29-206ENST00000549578 WASHC2CQ9Y4E1 1318 aa31.61■■■□□ 2.65
VPS29-206ENST00000549578 VWDEQ8N2E2 1590 aa31.61■■■□□ 2.65
VPS29-206ENST00000549578 CLTCQ00610 1675 aaKnown RBP31.6■■■□□ 2.65
VPS29-206ENST00000549578 ESF1Q9H501 851 aaKnown RBP31.6■■■□□ 2.65
VPS29-206ENST00000549578 NUP155O75694 1391 aa31.6■■■□□ 2.65
VPS29-206ENST00000549578 CEP152O94986 1710 aa31.6■■■□□ 2.65
VPS29-206ENST00000549578 ABCC3O15438 1527 aa31.6■■■□□ 2.65
VPS29-206ENST00000549578 KDM4FA0A1W2PPD8 638 aa31.59■■■□□ 2.65
VPS29-206ENST00000549578 TRIM52Q96A61 297 aa31.59■■■□□ 2.65
VPS29-206ENST00000549578 RIMS1Q86UR5 1692 aaKnown RBP31.58■■■□□ 2.65
VPS29-206ENST00000549578 FAM135AQ9P2D6 1515 aa31.57■■■□□ 2.65
VPS29-206ENST00000549578 ZC3H13Q5T200 1668 aaKnown RBP31.57■■■□□ 2.64
VPS29-206ENST00000549578 IQGAP3Q86VI3 1631 aa31.55■■■□□ 2.64
VPS29-206ENST00000549578 CNTLNQ9NXG0 1405 aa31.55■■■□□ 2.64
VPS29-206ENST00000549578 HRCP23327 699 aa31.51■■■□□ 2.63
VPS29-206ENST00000549578 LMTK2Q8IWU2 1503 aa31.51■■■□□ 2.63
VPS29-206ENST00000549578 CAMSAP1Q5T5Y3 1602 aa31.5■■■□□ 2.63
VPS29-206ENST00000549578 MROH2AA6NES4 1674 aa31.5■■■□□ 2.63
VPS29-206ENST00000549578 PZPP20742 1482 aa31.49■■■□□ 2.63
VPS29-206ENST00000549578 ZMYM3Q14202 1370 aa31.48■■■□□ 2.63
VPS29-206ENST00000549578 TET3O43151 1660 aa31.46■■■□□ 2.63
VPS29-206ENST00000549578 PTPRMP28827 1452 aa31.46■■■□□ 2.63
VPS29-206ENST00000549578 ACIN1Q9UKV3 1341 aaKnown RBP31.46■■■□□ 2.63
VPS29-206ENST00000549578 PLPPR3Q6T4P5 718 aa31.45■■■□□ 2.63
VPS29-206ENST00000549578 EFCAB6Q5THR3 1501 aa31.45■■■□□ 2.62
VPS29-206ENST00000549578 C3P01024 1663 aa31.44■■■□□ 2.62
VPS29-206ENST00000549578 CEBPAP49715 358 aaPredicted RBP31.44■■■□□ 2.62
VPS29-206ENST00000549578 SLC4A1APQ9BWU0 796 aaKnown RBP31.42■■■□□ 2.62
VPS29-206ENST00000549578 NPATQ14207 1427 aa31.4■■■□□ 2.62
VPS29-206ENST00000549578 MPHOSPH9Q99550 1183 aa31.39■■■□□ 2.62
VPS29-206ENST00000549578 ARHGAP31Q2M1Z3 1444 aa31.39■■■□□ 2.62
VPS29-206ENST00000549578 E9PCH4 1651 aa31.38■■■□□ 2.61
VPS29-206ENST00000549578 PKD2Q13563 968 aa31.35■■■□□ 2.61
VPS29-206ENST00000549578 FBXO31Q5XUX0 539 aaPredicted RBP31.35■■■□□ 2.61
VPS29-206ENST00000549578 CFAP65Q6ZU64 1925 aaKnown RBP31.35■■■□□ 2.61
VPS29-206ENST00000549578 RPRD2Q5VT52 1461 aaKnown RBP31.32■■■□□ 2.6
VPS29-206ENST00000549578 PREX1Q8TCU6 1659 aa31.3■■■□□ 2.6
VPS29-206ENST00000549578 FOXD1Q16676 465 aa31.3■■■□□ 2.6
VPS29-206ENST00000549578 ERVK-7P63135 1459 aa31.3■■■□□ 2.6
VPS29-206ENST00000549578 SPATA31D1Q6ZQQ2 1576 aa31.27■■■□□ 2.6
VPS29-206ENST00000549578 NOS1P29475 1434 aa31.24■■■□□ 2.59
VPS29-206ENST00000549578 TNRQ92752 1358 aa31.22■■■□□ 2.59
VPS29-206ENST00000549578 SYNMO15061 1565 aa31.21■■■□□ 2.59
VPS29-206ENST00000549578 SPHKAPQ2M3C7 1700 aa31.21■■■□□ 2.59
VPS29-206ENST00000549578 DHX57Q6P158 1386 aaKnown RBP31.21■■■□□ 2.59
VPS29-206ENST00000549578 PTPRTO14522 1441 aa31.19■■■□□ 2.58
VPS29-206ENST00000549578 PLA2R1Q13018 1463 aa31.18■■■□□ 2.58
VPS29-206ENST00000549578 TRPM2O94759 1503 aa31.15■■■□□ 2.58
VPS29-206ENST00000549578 UGGT1Q9NYU2 1555 aa31.15■■■□□ 2.58
VPS29-206ENST00000549578 SETD1BQ9UPS6 1966 aaKnown RBP31.14■■■□□ 2.58
VPS29-206ENST00000549578 MYO3AQ8NEV4 1616 aa31.14■■■□□ 2.58
VPS29-206ENST00000549578 ANKRD30BQ9BXX2 1392 aa31.1■■■□□ 2.57
VPS29-206ENST00000549578 PIK3C2BO00750 1634 aa31.09■■■□□ 2.57
VPS29-206ENST00000549578 IDI1Q13907 227 aa31.08■■■□□ 2.57
VPS29-206ENST00000549578 NLRP1Q9C000 1473 aa31.08■■■□□ 2.57
VPS29-206ENST00000549578 CLTCL1P53675 1640 aa31.08■■■□□ 2.57
VPS29-206ENST00000549578 UHRF1BP1Q6BDS2 1440 aa31.07■■■□□ 2.57
VPS29-206ENST00000549578 SLC52A1Q9NWF4 448 aa31.07■■■□□ 2.56
VPS29-206ENST00000549578 CEP170BQ9Y4F5 1589 aaPredicted RBP31.05■■■□□ 2.56
VPS29-206ENST00000549578 AEBP2Q6ZN18 517 aaPredicted RBP31.04■■■□□ 2.56
VPS29-206ENST00000549578 CCDC144AA2RUR9 1427 aa31.04■■■□□ 2.56
VPS29-206ENST00000549578 A2ML1A8K2U0 1454 aa31.03■■■□□ 2.56
VPS29-206ENST00000549578 ZNF142P52746 1687 aaPredicted RBP31.02■■■□□ 2.56
VPS29-206ENST00000549578 LMTK3Q96Q04 1460 aa30.98■■■□□ 2.55
VPS29-206ENST00000549578 ADGRB3O60242 1522 aa30.97■■■□□ 2.55
VPS29-206ENST00000549578 CHGAP10645 457 aaKnown RBP30.97■■■□□ 2.55
VPS29-206ENST00000549578 UBR1Q8IWV7 1749 aa30.97■■■□□ 2.55
VPS29-206ENST00000549578 STAG3Q9UJ98 1225 aa30.96■■■□□ 2.55
VPS29-206ENST00000549578 TMEM131LA2VDJ0 1609 aa30.95■■■□□ 2.55
VPS29-206ENST00000549578 KIF1BO60333 1816 aa30.94■■■□□ 2.54
VPS29-206ENST00000549578 CCER1Q8TC90 406 aaPredicted RBP30.93■■■□□ 2.54
VPS29-206ENST00000549578 MYO5BQ9ULV0 1848 aa30.93■■■□□ 2.54
VPS29-206ENST00000549578 KDM5AP29375 1690 aaKnown RBP30.92■■■□□ 2.54
VPS29-206ENST00000549578 SIN3AQ96ST3 1273 aa30.91■■■□□ 2.54
VPS29-206ENST00000549578 HSPA2P54652 639 aa30.89■■■□□ 2.54
VPS29-206ENST00000549578 THEMISQ8N1K5 641 aaPredicted RBP30.88■■■□□ 2.53
VPS29-206ENST00000549578 SPATA31E1Q6ZUB1 1445 aa30.86■■■□□ 2.53
VPS29-206ENST00000549578 NEUROD1Q13562 356 aa30.84■■■□□ 2.53
VPS29-206ENST00000549578 RGL3Q3MIN7 710 aa30.83■■■□□ 2.53
VPS29-206ENST00000549578 ZNF326Q5BKZ1 582 aaKnown RBP30.83■■■□□ 2.53
VPS29-206ENST00000549578 TMEM2Q9UHN6 1383 aa30.81■■■□□ 2.52
VPS29-206ENST00000549578 CLSPNQ9HAW4 1339 aa30.8■■■□□ 2.52
VPS29-206ENST00000549578 NEURL4Q96JN8 1562 aa30.8■■■□□ 2.52
VPS29-206ENST00000549578 SLIT1O75093 1534 aa30.79■■■□□ 2.52
VPS29-206ENST00000549578 ARHGAP23Q9P227 1491 aa30.79■■■□□ 2.52
VPS29-206ENST00000549578 RIMS2Q9UQ26 1411 aa30.77■■■□□ 2.52
VPS29-206ENST00000549578 ZFYVE9O95405 1425 aa30.76■■■□□ 2.51
VPS29-206ENST00000549578 NEXMIFQ5QGS0 1516 aa30.75■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms