RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 DUOX2Q9NRD8 1548 aa18.32■□□□□ 0.52
YBX3-217ENST00000546164 KIF15Q9NS87 1388 aa18.31■□□□□ 0.52
YBX3-217ENST00000546164 NPATQ14207 1427 aa18.3■□□□□ 0.52
YBX3-217ENST00000546164 EIF2AK4Q9P2K8 1649 aaKnown RBP18.3■□□□□ 0.52
YBX3-217ENST00000546164 SETD1BQ9UPS6 1966 aaKnown RBP18.3■□□□□ 0.52
YBX3-217ENST00000546164 FAM50AQ14320 339 aaKnown RBP18.29■□□□□ 0.52
YBX3-217ENST00000546164 ANKRD30AQ9BXX3 1397 aa18.29■□□□□ 0.52
YBX3-217ENST00000546164 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.29■□□□□ 0.52
YBX3-217ENST00000546164 ADGRL2O95490 1459 aa18.28■□□□□ 0.52
YBX3-217ENST00000546164 RNF17Q9BXT8 1623 aaKnown RBP18.28■□□□□ 0.52
YBX3-217ENST00000546164 NCOA1Q15788 1441 aa18.28■□□□□ 0.52
YBX3-217ENST00000546164 ERBINQ96RT1 1412 aa18.28■□□□□ 0.52
YBX3-217ENST00000546164 CLTCQ00610 1675 aaKnown RBP18.28■□□□□ 0.52
YBX3-217ENST00000546164 PREX1Q8TCU6 1659 aa18.27■□□□□ 0.52
YBX3-217ENST00000546164 KDM5DQ9BY66 1539 aa18.27■□□□□ 0.51
YBX3-217ENST00000546164 UHRF1BP1Q6BDS2 1440 aa18.26■□□□□ 0.51
YBX3-217ENST00000546164 PPARGC1BQ86YN6 1023 aaKnown RBP18.26■□□□□ 0.51
YBX3-217ENST00000546164 RRP7BPQ9NSQ0 103 aa18.26■□□□□ 0.51
YBX3-217ENST00000546164 PTPRKQ15262 1439 aa18.25■□□□□ 0.51
YBX3-217ENST00000546164 CHIC2Q9UKJ5 165 aa18.24■□□□□ 0.51
YBX3-217ENST00000546164 WASHC2CQ9Y4E1 1318 aa18.23■□□□□ 0.51
YBX3-217ENST00000546164 MROH1Q8NDA8 1641 aa18.23■□□□□ 0.51
YBX3-217ENST00000546164 HSPA2P54652 639 aa18.22■□□□□ 0.51
YBX3-217ENST00000546164 PZPP20742 1482 aa18.21■□□□□ 0.51
YBX3-217ENST00000546164 RRBP1Q9P2E9 1410 aaKnown RBP18.21■□□□□ 0.51
YBX3-217ENST00000546164 ABCC3O15438 1527 aa18.2■□□□□ 0.5
YBX3-217ENST00000546164 PRDM15P57071 1507 aaPredicted RBP18.2■□□□□ 0.5
YBX3-217ENST00000546164 ROCK1Q13464 1354 aa18.19■□□□□ 0.5
YBX3-217ENST00000546164 ZC3H13Q5T200 1668 aaKnown RBP18.19■□□□□ 0.5
YBX3-217ENST00000546164 DEPDC5O75140 1603 aa18.18■□□□□ 0.5
YBX3-217ENST00000546164 ANKRD50Q9ULJ7 1429 aa18.16■□□□□ 0.5
YBX3-217ENST00000546164 FBXO31Q5XUX0 539 aaPredicted RBP18.14■□□□□ 0.49
YBX3-217ENST00000546164 TNRQ92752 1358 aa18.14■□□□□ 0.49
YBX3-217ENST00000546164 MYO3AQ8NEV4 1616 aa18.13■□□□□ 0.49
YBX3-217ENST00000546164 KANK1Q14678 1352 aa18.13■□□□□ 0.49
YBX3-217ENST00000546164 ARHGAP31Q2M1Z3 1444 aa18.13■□□□□ 0.49
YBX3-217ENST00000546164 VWDEQ8N2E2 1590 aa18.13■□□□□ 0.49
YBX3-217ENST00000546164 LMTK2Q8IWU2 1503 aa18.12■□□□□ 0.49
YBX3-217ENST00000546164 ZNF142P52746 1687 aaPredicted RBP18.12■□□□□ 0.49
YBX3-217ENST00000546164 CEP170BQ9Y4F5 1589 aaPredicted RBP18.11■□□□□ 0.49
YBX3-217ENST00000546164 CAMSAP1Q5T5Y3 1602 aa18.1■□□□□ 0.49
YBX3-217ENST00000546164 SPATA31D1Q6ZQQ2 1576 aa18.1■□□□□ 0.49
YBX3-217ENST00000546164 A2ML1A8K2U0 1454 aa18.1■□□□□ 0.49
YBX3-217ENST00000546164 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.1■□□□□ 0.494e-9■□□□□ 10.2
YBX3-217ENST00000546164 CEP152O94986 1710 aa18.09■□□□□ 0.49
YBX3-217ENST00000546164 ERVK-7P63135 1459 aa18.09■□□□□ 0.49
YBX3-217ENST00000546164 NLRP1Q9C000 1473 aa18.08■□□□□ 0.49
YBX3-217ENST00000546164 ITGAEP38570 1179 aa18.08■□□□□ 0.48
YBX3-217ENST00000546164 PLA2R1Q13018 1463 aa18.07■□□□□ 0.48
YBX3-217ENST00000546164 DMRT2Q9Y5R5 561 aa18.06■□□□□ 0.48
YBX3-217ENST00000546164 STRCQ7RTU9 1775 aa18.06■□□□□ 0.48
YBX3-217ENST00000546164 UNC13BO14795 1591 aa18.04■□□□□ 0.48
YBX3-217ENST00000546164 PTPRTO14522 1441 aa18.04■□□□□ 0.48
YBX3-217ENST00000546164 EFCAB6Q5THR3 1501 aa18.03■□□□□ 0.48
YBX3-217ENST00000546164 PKD2Q13563 968 aa18.01■□□□□ 0.47
YBX3-217ENST00000546164 RPRD2Q5VT52 1461 aaKnown RBP18.01■□□□□ 0.47
YBX3-217ENST00000546164 NOS1P29475 1434 aa17.99■□□□□ 0.47
YBX3-217ENST00000546164 NAIPQ13075 1403 aa17.99■□□□□ 0.47
YBX3-217ENST00000546164 THEMISQ8N1K5 641 aaPredicted RBP17.99■□□□□ 0.47
YBX3-217ENST00000546164 UGGT1Q9NYU2 1555 aa17.99■□□□□ 0.47
YBX3-217ENST00000546164 HFM1A2PYH4 1435 aa17.98■□□□□ 0.47
YBX3-217ENST00000546164 TET3O43151 1660 aa17.97■□□□□ 0.47
YBX3-217ENST00000546164 IQGAP3Q86VI3 1631 aa17.97■□□□□ 0.47
YBX3-217ENST00000546164 NCKAP5LQ9HCH0 1330 aa17.97■□□□□ 0.47
YBX3-217ENST00000546164 NUP155O75694 1391 aa17.95■□□□□ 0.46
YBX3-217ENST00000546164 CFAP65Q6ZU64 1925 aaKnown RBP17.94■□□□□ 0.46
YBX3-217ENST00000546164 GCC2Q8IWJ2 1684 aa17.93■□□□□ 0.46
YBX3-217ENST00000546164 SYNMO15061 1565 aa17.93■□□□□ 0.46
YBX3-217ENST00000546164 ANKLE2Q86XL3 938 aa17.92■□□□□ 0.46
YBX3-217ENST00000546164 SLC52A1Q9NWF4 448 aa17.92■□□□□ 0.46
YBX3-217ENST00000546164 UBR1Q8IWV7 1749 aa17.91■□□□□ 0.46
YBX3-217ENST00000546164 MED14O60244 1454 aa17.9■□□□□ 0.46
YBX3-217ENST00000546164 IDI1Q13907 227 aa17.9■□□□□ 0.46
YBX3-217ENST00000546164 NEURL4Q96JN8 1562 aa17.9■□□□□ 0.46
YBX3-217ENST00000546164 ARHGAP23Q9P227 1491 aa17.89■□□□□ 0.45
YBX3-217ENST00000546164 SLIT1O75093 1534 aa17.89■□□□□ 0.45
YBX3-217ENST00000546164 PIK3C2BO00750 1634 aa17.89■□□□□ 0.45
YBX3-217ENST00000546164 KDM5AP29375 1690 aaKnown RBP17.89■□□□□ 0.45
YBX3-217ENST00000546164 E9PCH4 1651 aa17.88■□□□□ 0.45
YBX3-217ENST00000546164 POLR1AO95602 1720 aaPredicted RBP17.88■□□□□ 0.45
YBX3-217ENST00000546164 CERKQ8TCT0 537 aa17.86■□□□□ 0.45
YBX3-217ENST00000546164 TMEM2Q9UHN6 1383 aa17.86■□□□□ 0.45
YBX3-217ENST00000546164 ADGRB3O60242 1522 aa17.85■□□□□ 0.45
YBX3-217ENST00000546164 NPHP4O75161 1426 aaPredicted RBP17.85■□□□□ 0.45
YBX3-217ENST00000546164 LTBP4Q8N2S1 1624 aa17.85■□□□□ 0.45
YBX3-217ENST00000546164 SCAF11Q99590 1463 aaKnown RBP17.84■□□□□ 0.45
YBX3-217ENST00000546164 STAG3Q9UJ98 1225 aa17.84■□□□□ 0.45
YBX3-217ENST00000546164 LTKP29376 864 aa17.82■□□□□ 0.44
YBX3-217ENST00000546164 ZNF335Q9H4Z2 1342 aaPredicted RBP17.81■□□□□ 0.44
YBX3-217ENST00000546164 TXNDC2Q86VQ3 553 aa17.81■□□□□ 0.44
YBX3-217ENST00000546164 FBXO41Q8TF61 875 aa17.81■□□□□ 0.44
YBX3-217ENST00000546164 EID1Q9Y6B2 187 aa17.81■□□□□ 0.44
YBX3-217ENST00000546164 ILDR1Q86SU0 546 aaPredicted RBP17.8■□□□□ 0.44
YBX3-217ENST00000546164 ACIN1Q9UKV3 1341 aaKnown RBP17.79■□□□□ 0.44
YBX3-217ENST00000546164 TRIM52Q96A61 297 aa17.79■□□□□ 0.44
YBX3-217ENST00000546164 IQGAP1P46940 1657 aa17.79■□□□□ 0.44
YBX3-217ENST00000546164 IQSEC2Q5JU85 1478 aa17.78■□□□□ 0.44
YBX3-217ENST00000546164 TMEM131LA2VDJ0 1609 aa17.78■□□□□ 0.44
YBX3-217ENST00000546164 ZFYVE9O95405 1425 aa17.77■□□□□ 0.44
YBX3-217ENST00000546164 SETD5Q9C0A6 1442 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms