RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 MYO3AQ8NEV4 1616 aa14.33□□□□□ -0.11
YBX3-215ENST00000544504 CAMSAP2Q08AD1 1489 aa14.33□□□□□ -0.12
YBX3-215ENST00000544504 CDC42BPBQ9Y5S2 1711 aa14.33□□□□□ -0.12
YBX3-215ENST00000544504 RSPH4AQ5TD94 716 aa14.32□□□□□ -0.12
YBX3-215ENST00000544504 PTPRKQ15262 1439 aa14.32□□□□□ -0.12
YBX3-215ENST00000544504 CPS1P31327 1500 aa14.31□□□□□ -0.12
YBX3-215ENST00000544504 ZNF777Q9ULD5 760 aaPredicted RBP14.31□□□□□ -0.12
YBX3-215ENST00000544504 KIAA1107Q9UPP5 1409 aa14.31□□□□□ -0.12
YBX3-215ENST00000544504 SPAG9O60271 1321 aaKnown RBP14.29□□□□□ -0.12
YBX3-215ENST00000544504 SAMD9LQ8IVG5 1584 aa14.29□□□□□ -0.12
YBX3-215ENST00000544504 DNMT1P26358 1616 aaKnown RBP14.28□□□□□ -0.12
YBX3-215ENST00000544504 ARHGEF5Q12774 1597 aa14.28□□□□□ -0.12
YBX3-215ENST00000544504 CLTCQ00610 1675 aaKnown RBP14.27□□□□□ -0.12
YBX3-215ENST00000544504 SHANK2Q9UPX8 1470 aa14.27□□□□□ -0.12
YBX3-215ENST00000544504 A2ML1A8K2U0 1454 aa14.26□□□□□ -0.13
YBX3-215ENST00000544504 ZNF644Q9H582 1327 aaPredicted RBP14.26□□□□□ -0.13
YBX3-215ENST00000544504 DAPK1P53355 1430 aa14.25□□□□□ -0.13
YBX3-215ENST00000544504 ITGAEP38570 1179 aa14.25□□□□□ -0.13
YBX3-215ENST00000544504 GGT6Q6P531 493 aa14.25□□□□□ -0.13
YBX3-215ENST00000544504 PLXNC1O60486 1568 aa14.25□□□□□ -0.13
YBX3-215ENST00000544504 A2MP01023 1474 aa14.25□□□□□ -0.13
YBX3-215ENST00000544504 CCDC141Q6ZP82 1450 aa14.25□□□□□ -0.13
YBX3-215ENST00000544504 TSPY4P0CV99 314 aa14.24□□□□□ -0.13
YBX3-215ENST00000544504 TSPY10P0CW01 314 aa14.24□□□□□ -0.13
YBX3-215ENST00000544504 ABCC5O15440 1437 aa14.24□□□□□ -0.13
YBX3-215ENST00000544504 ATP7AQ04656 1500 aa14.23□□□□□ -0.13
YBX3-215ENST00000544504 SYCP2Q9BX26 1530 aa14.23□□□□□ -0.13
YBX3-215ENST00000544504 MBD5Q9P267 1494 aa14.23□□□□□ -0.13
YBX3-215ENST00000544504 ROCK1Q13464 1354 aa14.22□□□□□ -0.13
YBX3-215ENST00000544504 HNRNPMP52272 730 aaKnown RBP eCLIP14.22□□□□□ -0.13
YBX3-215ENST00000544504 ACIN1Q9UKV3 1341 aaKnown RBP14.21□□□□□ -0.13
YBX3-215ENST00000544504 CROCC2H7BZ55 1655 aa14.21□□□□□ -0.13
YBX3-215ENST00000544504 NEURL4Q96JN8 1562 aa14.21□□□□□ -0.14
YBX3-215ENST00000544504 ANKRD30AQ9BXX3 1397 aa14.2□□□□□ -0.14
YBX3-215ENST00000544504 ADGRL2O95490 1459 aa14.19□□□□□ -0.14
YBX3-215ENST00000544504 INO80Q9ULG1 1556 aaPredicted RBP14.19□□□□□ -0.14
YBX3-215ENST00000544504 MAST1Q9Y2H9 1570 aa14.19□□□□□ -0.14
YBX3-215ENST00000544504 ANKLE2Q86XL3 938 aa14.19□□□□□ -0.14
YBX3-215ENST00000544504 ADGBQ8N7X0 1667 aa14.19□□□□□ -0.14
YBX3-215ENST00000544504 ALKQ9UM73 1620 aa14.19□□□□□ -0.14
YBX3-215ENST00000544504 POLR1AO95602 1720 aaPredicted RBP14.18□□□□□ -0.14
YBX3-215ENST00000544504 VWDEQ8N2E2 1590 aa14.18□□□□□ -0.14
YBX3-215ENST00000544504 TNRQ92752 1358 aa14.18□□□□□ -0.14
YBX3-215ENST00000544504 HFM1A2PYH4 1435 aa14.17□□□□□ -0.14
YBX3-215ENST00000544504 RTEL1-TNFRSF6BF6WH68 1400 aa14.16□□□□□ -0.14
YBX3-215ENST00000544504 SETD5Q9C0A6 1442 aa14.16□□□□□ -0.14
YBX3-215ENST00000544504 HRCP23327 699 aa14.16□□□□□ -0.14
YBX3-215ENST00000544504 THEMISQ8N1K5 641 aaPredicted RBP14.16□□□□□ -0.14
YBX3-215ENST00000544504 MED14O60244 1454 aa14.15□□□□□ -0.14
YBX3-215ENST00000544504 RGS17Q9UGC6 210 aaPredicted RBP14.15□□□□□ -0.14
YBX3-215ENST00000544504 CHIC2Q9UKJ5 165 aa14.15□□□□□ -0.14
YBX3-215ENST00000544504 NPHP4O75161 1426 aaPredicted RBP14.15□□□□□ -0.14
YBX3-215ENST00000544504 FBXO31Q5XUX0 539 aaPredicted RBP14.14□□□□□ -0.15
YBX3-215ENST00000544504 SENP3Q9H4L4 574 aaPredicted RBP14.14□□□□□ -0.15
YBX3-215ENST00000544504 PZPP20742 1482 aa14.13□□□□□ -0.15
YBX3-215ENST00000544504 NAIPQ13075 1403 aa14.13□□□□□ -0.15
YBX3-215ENST00000544504 GCC2Q8IWJ2 1684 aa14.13□□□□□ -0.15
YBX3-215ENST00000544504 NLRP1Q9C000 1473 aa14.12□□□□□ -0.15
YBX3-215ENST00000544504 DEPDC5O75140 1603 aa14.12□□□□□ -0.15
YBX3-215ENST00000544504 LRRC7Q96NW7 1537 aa14.11□□□□□ -0.15
YBX3-215ENST00000544504 FAM135AQ9P2D6 1515 aa14.11□□□□□ -0.15
YBX3-215ENST00000544504 RRP7BPQ9NSQ0 103 aa14.11□□□□□ -0.15
YBX3-215ENST00000544504 RNF17Q9BXT8 1623 aaKnown RBP14.11□□□□□ -0.15
YBX3-215ENST00000544504 DHX29Q7Z478 1369 aaKnown RBP14.1□□□□□ -0.15
YBX3-215ENST00000544504 KIF15Q9NS87 1388 aa14.1□□□□□ -0.15
YBX3-215ENST00000544504 UGGT1Q9NYU2 1555 aa14.1□□□□□ -0.15
YBX3-215ENST00000544504 KDM5DQ9BY66 1539 aa14.1□□□□□ -0.15
YBX3-215ENST00000544504 RAB3GAP2Q9H2M9 1393 aa14.09□□□□□ -0.15
YBX3-215ENST00000544504 WASHC2CQ9Y4E1 1318 aa14.09□□□□□ -0.15
YBX3-215ENST00000544504 SYNMO15061 1565 aa14.09□□□□□ -0.15
YBX3-215ENST00000544504 KIF3BO15066 747 aa14.08□□□□□ -0.16
YBX3-215ENST00000544504 DUOX2Q9NRD8 1548 aa14.08□□□□□ -0.16
YBX3-215ENST00000544504 IQGAP1P46940 1657 aa14.07□□□□□ -0.16
YBX3-215ENST00000544504 ANKRD50Q9ULJ7 1429 aa14.07□□□□□ -0.16
YBX3-215ENST00000544504 ERBINQ96RT1 1412 aa14.06□□□□□ -0.16
YBX3-215ENST00000544504 POTEAQ6S8J7 498 aa14.05□□□□□ -0.16
YBX3-215ENST00000544504 STRCP1A6NGW2 1772 aa14.02□□□□□ -0.16
YBX3-215ENST00000544504 SRCAPQ6ZRS2 3230 aa14.02□□□□□ -0.17
YBX3-215ENST00000544504 FAM135BQ49AJ0 1406 aa14.01□□□□□ -0.17
YBX3-215ENST00000544504 EIF2AK4Q9P2K8 1649 aaKnown RBP14.01□□□□□ -0.17
YBX3-215ENST00000544504 CLSPNQ9HAW4 1339 aa13.98□□□□□ -0.17
YBX3-215ENST00000544504 CCER1Q8TC90 406 aaPredicted RBP13.98□□□□□ -0.17
YBX3-215ENST00000544504 TRIM52Q96A61 297 aa13.98□□□□□ -0.17
YBX3-215ENST00000544504 SCAF11Q99590 1463 aaKnown RBP13.97□□□□□ -0.17
YBX3-215ENST00000544504 ZC3H13Q5T200 1668 aaKnown RBP13.97□□□□□ -0.17
YBX3-215ENST00000544504 UNC13BO14795 1591 aa13.96□□□□□ -0.18
YBX3-215ENST00000544504 KANK1Q14678 1352 aa13.96□□□□□ -0.18
YBX3-215ENST00000544504 DHX57Q6P158 1386 aaKnown RBP13.95□□□□□ -0.18
YBX3-215ENST00000544504 NUP155O75694 1391 aa13.94□□□□□ -0.18
YBX3-215ENST00000544504 ERVK-7P63135 1459 aa13.93□□□□□ -0.18
YBX3-215ENST00000544504 TXNDC2Q86VQ3 553 aa13.93□□□□□ -0.18
YBX3-215ENST00000544504 ABCC3O15438 1527 aa13.92□□□□□ -0.18
YBX3-215ENST00000544504 LTKP29376 864 aa13.92□□□□□ -0.18
YBX3-215ENST00000544504 ARHGAP23Q9P227 1491 aa13.92□□□□□ -0.18
YBX3-215ENST00000544504 SLIT1O75093 1534 aa13.91□□□□□ -0.18
YBX3-215ENST00000544504 MPHOSPH9Q99550 1183 aa13.91□□□□□ -0.18
YBX3-215ENST00000544504 SLC4A1APQ9BWU0 796 aaKnown RBP13.91□□□□□ -0.18
YBX3-215ENST00000544504 EID1Q9Y6B2 187 aa13.91□□□□□ -0.18
YBX3-215ENST00000544504 TMEM94Q12767 1356 aa13.91□□□□□ -0.18
YBX3-215ENST00000544504 ZEB1P37275 1124 aaPredicted RBP13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 260.2 ms