RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 IQGAP3Q86VI3 1631 aa24.83■■□□□ 1.57
VIM-209ENST00000544301 BCANQ96GW7 911 aa24.83■■□□□ 1.57
VIM-209ENST00000544301 CCDC144AA2RUR9 1427 aa24.82■■□□□ 1.56
VIM-209ENST00000544301 MRS2Q9HD23 443 aa24.82■■□□□ 1.56
VIM-209ENST00000544301 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.82■■□□□ 1.562e-9■■□□□ 12.6
VIM-209ENST00000544301 PLA2R1Q13018 1463 aa24.81■■□□□ 1.56
VIM-209ENST00000544301 ABCC1P33527 1531 aa24.8■■□□□ 1.56
VIM-209ENST00000544301 ERBINQ96RT1 1412 aa24.79■■□□□ 1.56
VIM-209ENST00000544301 MAGI2Q86UL8 1455 aa24.78■■□□□ 1.56
VIM-209ENST00000544301 POLR3GLQ9BT43 218 aa24.77■■□□□ 1.56
VIM-209ENST00000544301 FAM9BQ8IZU0 186 aa24.76■■□□□ 1.55
VIM-209ENST00000544301 TRAPPC8Q9Y2L5 1435 aa24.75■■□□□ 1.55
VIM-209ENST00000544301 ROCK2O75116 1388 aaKnown RBP24.75■■□□□ 1.55
VIM-209ENST00000544301 PRAG1Q86YV5 1406 aa24.75■■□□□ 1.55
VIM-209ENST00000544301 ST20-MTHFSA0A0A6YYL1 179 aa24.74■■□□□ 1.55
VIM-209ENST00000544301 TRPM1Q7Z4N2 1603 aa24.73■■□□□ 1.55
VIM-209ENST00000544301 ARAP3Q8WWN8 1544 aa24.72■■□□□ 1.55
VIM-209ENST00000544301 ATP10AO60312 1499 aa24.71■■□□□ 1.55
VIM-209ENST00000544301 A2MP01023 1474 aa24.7■■□□□ 1.55
VIM-209ENST00000544301 RGL3Q3MIN7 710 aa24.7■■□□□ 1.54
VIM-209ENST00000544301 TSHZ2Q9NRE2 1034 aa24.68■■□□□ 1.54
VIM-209ENST00000544301 ZBED9Q6R2W3 1325 aa24.67■■□□□ 1.54
VIM-209ENST00000544301 RTEL1-TNFRSF6BF6WH68 1400 aa24.66■■□□□ 1.54
VIM-209ENST00000544301 WDR7Q9Y4E6 1490 aa24.66■■□□□ 1.54
VIM-209ENST00000544301 SPAG9O60271 1321 aaKnown RBP24.66■■□□□ 1.54
VIM-209ENST00000544301 GPRASP1Q5JY77 1395 aa24.65■■□□□ 1.54
VIM-209ENST00000544301 AFAP1Q8N556 730 aa24.64■■□□□ 1.53
VIM-209ENST00000544301 ZFYVE16Q7Z3T8 1539 aa24.64■■□□□ 1.53
VIM-209ENST00000544301 CNGB1Q14028 1251 aaPredicted RBP24.62■■□□□ 1.53
VIM-209ENST00000544301 NBPF1Q3BBV0 1214 aa24.62■■□□□ 1.53
VIM-209ENST00000544301 LAMC1P11047 1609 aa24.62■■□□□ 1.53
VIM-209ENST00000544301 E9PCH4 1651 aa24.61■■□□□ 1.53
VIM-209ENST00000544301 ABCA9Q8IUA7 1624 aa24.59■■□□□ 1.53
VIM-209ENST00000544301 EIF2AK4Q9P2K8 1649 aaKnown RBP24.59■■□□□ 1.53
VIM-209ENST00000544301 PRDM15P57071 1507 aaPredicted RBP24.58■■□□□ 1.52
VIM-209ENST00000544301 FANCAO15360 1455 aa24.57■■□□□ 1.52
VIM-209ENST00000544301 DEPDC5O75140 1603 aa24.54■■□□□ 1.52
VIM-209ENST00000544301 INO80Q9ULG1 1556 aaPredicted RBP24.54■■□□□ 1.52
VIM-209ENST00000544301 KTN1Q86UP2 1357 aaKnown RBP24.54■■□□□ 1.52
VIM-209ENST00000544301 ATP7AQ04656 1500 aa24.53■■□□□ 1.52
VIM-209ENST00000544301 IRX6P78412 446 aaPredicted RBP24.52■■□□□ 1.52
VIM-209ENST00000544301 TRPM2O94759 1503 aa24.51■■□□□ 1.51
VIM-209ENST00000544301 PNISRQ8TF01 805 aaKnown RBP24.51■■□□□ 1.51
VIM-209ENST00000544301 RALBP1Q15311 655 aa24.5■■□□□ 1.51
VIM-209ENST00000544301 ASXL2Q76L83 1435 aa24.5■■□□□ 1.51
VIM-209ENST00000544301 COL17A1Q9UMD9 1497 aaPredicted RBP24.5■■□□□ 1.51
VIM-209ENST00000544301 TESK2Q96S53 571 aa24.5■■□□□ 1.51
VIM-209ENST00000544301 TMC1Q8TDI8 760 aa24.49■■□□□ 1.51
VIM-209ENST00000544301 PTPRTO14522 1441 aa24.49■■□□□ 1.51
VIM-209ENST00000544301 ERICH6BQ5W0A0 696 aa24.49■■□□□ 1.51
VIM-209ENST00000544301 ADGRL1O94910 1474 aa24.49■■□□□ 1.51
VIM-209ENST00000544301 RNF17Q9BXT8 1623 aaKnown RBP24.48■■□□□ 1.51
VIM-209ENST00000544301 MYBBP1AQ9BQG0 1328 aaKnown RBP24.48■■□□□ 1.51
VIM-209ENST00000544301 SCAPERQ9BY12 1400 aa24.48■■□□□ 1.51
VIM-209ENST00000544301 SPHKAPQ2M3C7 1700 aa24.47■■□□□ 1.51
VIM-209ENST00000544301 BRD4O60885 1362 aaPredicted RBP24.47■■□□□ 1.51
VIM-209ENST00000544301 TET3O43151 1660 aa24.47■■□□□ 1.51
VIM-209ENST00000544301 VWDEQ8N2E2 1590 aa24.46■■□□□ 1.51
VIM-209ENST00000544301 DISP3Q9P2K9 1392 aa24.46■■□□□ 1.51
VIM-209ENST00000544301 CEP152O94986 1710 aa24.45■■□□□ 1.5
VIM-209ENST00000544301 MADDQ8WXG6 1647 aa24.44■■□□□ 1.5
VIM-209ENST00000544301 SMG6Q86US8 1419 aaKnown RBP24.44■■□□□ 1.5
VIM-209ENST00000544301 KANK1Q14678 1352 aa24.44■■□□□ 1.5
VIM-209ENST00000544301 CLTCL1P53675 1640 aa24.43■■□□□ 1.5
VIM-209ENST00000544301 LRPPRCP42704 1394 aaKnown RBP24.42■■□□□ 1.5
VIM-209ENST00000544301 PER1O15534 1290 aaPredicted RBP24.42■■□□□ 1.5
VIM-209ENST00000544301 PARD3Q8TEW0 1356 aa24.41■■□□□ 1.5
VIM-209ENST00000544301 KIF3BO15066 747 aa24.41■■□□□ 1.5
VIM-209ENST00000544301 MYT1LQ9UL68 1186 aa24.4■■□□□ 1.5
VIM-209ENST00000544301 TMF1P82094 1093 aa24.39■■□□□ 1.49
VIM-209ENST00000544301 STAC3Q96MF2 364 aa24.38■■□□□ 1.49
VIM-209ENST00000544301 MROH1Q8NDA8 1641 aa24.38■■□□□ 1.49
VIM-209ENST00000544301 PPP4R2Q9NY27 417 aa24.37■■□□□ 1.49
VIM-209ENST00000544301 NUDCQ9Y266 331 aa24.37■■□□□ 1.49
VIM-209ENST00000544301 IQGAP1P46940 1657 aa24.36■■□□□ 1.49
VIM-209ENST00000544301 WASHC2CQ9Y4E1 1318 aa24.36■■□□□ 1.49
VIM-209ENST00000544301 NLRP13Q86W25 1043 aa24.35■■□□□ 1.49
VIM-209ENST00000544301 OSCARQ8IYS5 282 aa24.35■■□□□ 1.49
VIM-209ENST00000544301 KIDINS220Q9ULH0 1771 aa24.35■■□□□ 1.49
VIM-209ENST00000544301 NPM1P06748 294 aaKnown RBP eCLIP24.33■■□□□ 1.49
VIM-209ENST00000544301 PANK3Q9H999 370 aa24.33■■□□□ 1.49
VIM-209ENST00000544301 NEURL4Q96JN8 1562 aa24.32■■□□□ 1.48
VIM-209ENST00000544301 ZNF518AQ6AHZ1 1483 aa24.31■■□□□ 1.48
VIM-209ENST00000544301 SCAF11Q99590 1463 aaKnown RBP24.3■■□□□ 1.48
VIM-209ENST00000544301 SENP3-EIF4A1A0A087X0R7 540 aa24.29■■□□□ 1.48
VIM-209ENST00000544301 EFCAB6Q5THR3 1501 aa24.28■■□□□ 1.48
VIM-209ENST00000544301 RNF123Q5XPI4 1314 aa24.27■■□□□ 1.48
VIM-209ENST00000544301 CC2D1BQ5T0F9 858 aaKnown RBP24.27■■□□□ 1.48
VIM-209ENST00000544301 RBM19Q9Y4C8 960 aaKnown RBP24.26■■□□□ 1.47
VIM-209ENST00000544301 CD109Q6YHK3 1445 aa24.26■■□□□ 1.47
VIM-209ENST00000544301 KIAA1210Q9ULL0 1709 aa24.26■■□□□ 1.47
VIM-209ENST00000544301 UGGT1Q9NYU2 1555 aa24.26■■□□□ 1.47
VIM-209ENST00000544301 CFAP74Q9C0B2 1584 aa24.25■■□□□ 1.47
VIM-209ENST00000544301 LMTK2Q8IWU2 1503 aa24.25■■□□□ 1.47
VIM-209ENST00000544301 PPRC1Q5VV67 1664 aaKnown RBP24.24■■□□□ 1.47
VIM-209ENST00000544301 POGZQ7Z3K3 1410 aa24.23■■□□□ 1.47
VIM-209ENST00000544301 MYOM2P54296 1465 aa24.22■■□□□ 1.47
VIM-209ENST00000544301 KIF1BO60333 1816 aa24.21■■□□□ 1.47
VIM-209ENST00000544301 MAP3K4Q9Y6R4 1608 aa24.21■■□□□ 1.47
VIM-209ENST00000544301 CDCA8Q53HL2 280 aa24.2■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms