RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 MYT1LQ9UL68 1186 aa17.13■□□□□ 0.33
RNF4-222ENST00000541204 TRAPPC8Q9Y2L5 1435 aa17.12■□□□□ 0.33
RNF4-222ENST00000541204 KDM5DQ9BY66 1539 aa17.12■□□□□ 0.33
RNF4-222ENST00000541204 MSH5O43196 834 aa17.1■□□□□ 0.33
RNF4-222ENST00000541204 UHRF1BP1LA0JNW5 1464 aa17.1■□□□□ 0.33
RNF4-222ENST00000541204 CCDC144AA2RUR9 1427 aa17.1■□□□□ 0.33
RNF4-222ENST00000541204 ST20-MTHFSA0A0A6YYL1 179 aa17.08■□□□□ 0.33
RNF4-222ENST00000541204 SPAG9O60271 1321 aaKnown RBP17.08■□□□□ 0.32
RNF4-222ENST00000541204 ZBED9Q6R2W3 1325 aa17.07■□□□□ 0.32
RNF4-222ENST00000541204 PPP4R2Q9NY27 417 aa17.07■□□□□ 0.32
RNF4-222ENST00000541204 ERICH6BQ5W0A0 696 aa17.07■□□□□ 0.32
RNF4-222ENST00000541204 ROCK2O75116 1388 aaKnown RBP17.05■□□□□ 0.32
RNF4-222ENST00000541204 MAST1Q9Y2H9 1570 aa17.05■□□□□ 0.32
RNF4-222ENST00000541204 PLA2R1Q13018 1463 aa17.05■□□□□ 0.32
RNF4-222ENST00000541204 NBPF1Q3BBV0 1214 aa17.05■□□□□ 0.32
RNF4-222ENST00000541204 POLR1AO95602 1720 aaPredicted RBP17.04■□□□□ 0.32
RNF4-222ENST00000541204 UHRF1BP1Q6BDS2 1440 aa17.04■□□□□ 0.32
RNF4-222ENST00000541204 BCORL1Q5H9F3 1711 aa17.03■□□□□ 0.32
RNF4-222ENST00000541204 FANCIQ9NVI1 1328 aa17.03■□□□□ 0.32
RNF4-222ENST00000541204 RALGAPBQ86X10 1494 aa17.03■□□□□ 0.32
RNF4-222ENST00000541204 ABCC1P33527 1531 aa17.03■□□□□ 0.32
RNF4-222ENST00000541204 DUOX2Q9NRD8 1548 aa17.03■□□□□ 0.32
RNF4-222ENST00000541204 B4GALNT3Q6L9W6 998 aa17.02■□□□□ 0.31
RNF4-222ENST00000541204 WDR7Q9Y4E6 1490 aa17.02■□□□□ 0.31
RNF4-222ENST00000541204 KDM5CP41229 1560 aa17.02■□□□□ 0.31
RNF4-222ENST00000541204 SENP3-EIF4A1A0A087X0R7 540 aa17.01■□□□□ 0.31
RNF4-222ENST00000541204 OSCARQ8IYS5 282 aa17.01■□□□□ 0.31
RNF4-222ENST00000541204 PLXNC1O60486 1568 aa17.01■□□□□ 0.31
RNF4-222ENST00000541204 UNC13BO14795 1591 aa17■□□□□ 0.31
RNF4-222ENST00000541204 ERBINQ96RT1 1412 aa16.99■□□□□ 0.31
RNF4-222ENST00000541204 FANCAO15360 1455 aa16.99■□□□□ 0.31
RNF4-222ENST00000541204 ASXL2Q76L83 1435 aa16.97■□□□□ 0.31
RNF4-222ENST00000541204 DHX29Q7Z478 1369 aaKnown RBP16.97■□□□□ 0.31
RNF4-222ENST00000541204 NPM1P06748 294 aaKnown RBP eCLIP16.97■□□□□ 0.31
RNF4-222ENST00000541204 KIF3BO15066 747 aa16.97■□□□□ 0.31
RNF4-222ENST00000541204 SCAPERQ9BY12 1400 aa16.97■□□□□ 0.31
RNF4-222ENST00000541204 A2MP01023 1474 aa16.96■□□□□ 0.31
RNF4-222ENST00000541204 PRAG1Q86YV5 1406 aa16.96■□□□□ 0.31
RNF4-222ENST00000541204 IQGAP3Q86VI3 1631 aa16.95■□□□□ 0.3
RNF4-222ENST00000541204 ADGRL1O94910 1474 aa16.93■□□□□ 0.3
RNF4-222ENST00000541204 ERICH6Q7L0X2 663 aa16.92■□□□□ 0.3
RNF4-222ENST00000541204 ZFYVE16Q7Z3T8 1539 aa16.92■□□□□ 0.3
RNF4-222ENST00000541204 ARID4BQ4LE39 1312 aaPredicted RBP16.91■□□□□ 0.3
RNF4-222ENST00000541204 SMG6Q86US8 1419 aaKnown RBP16.9■□□□□ 0.3
RNF4-222ENST00000541204 MAGI2Q86UL8 1455 aa16.9■□□□□ 0.3
RNF4-222ENST00000541204 RTEL1-TNFRSF6BF6WH68 1400 aa16.89■□□□□ 0.29
RNF4-222ENST00000541204 NUDCQ9Y266 331 aa16.88■□□□□ 0.29
RNF4-222ENST00000541204 ATP7AQ04656 1500 aa16.88■□□□□ 0.29
RNF4-222ENST00000541204 BCL11AQ9H165 835 aa16.87■□□□□ 0.29
RNF4-222ENST00000541204 ARAP3Q8WWN8 1544 aa16.87■□□□□ 0.29
RNF4-222ENST00000541204 TMC1Q8TDI8 760 aa16.87■□□□□ 0.29
RNF4-222ENST00000541204 TRPM1Q7Z4N2 1603 aa16.86■□□□□ 0.29
RNF4-222ENST00000541204 ABCA9Q8IUA7 1624 aa16.86■□□□□ 0.29
RNF4-222ENST00000541204 KANK1Q14678 1352 aa16.85■□□□□ 0.29
RNF4-222ENST00000541204 DISP3Q9P2K9 1392 aa16.84■□□□□ 0.29
RNF4-222ENST00000541204 ATP10AO60312 1499 aa16.84■□□□□ 0.29
RNF4-222ENST00000541204 PNISRQ8TF01 805 aaKnown RBP16.84■□□□□ 0.29
RNF4-222ENST00000541204 E9PCH4 1651 aa16.84■□□□□ 0.29
RNF4-222ENST00000541204 TESK2Q96S53 571 aa16.83■□□□□ 0.29
RNF4-222ENST00000541204 CD109Q6YHK3 1445 aa16.82■□□□□ 0.28
RNF4-222ENST00000541204 CC2D1BQ5T0F9 858 aaKnown RBP16.82■□□□□ 0.28
RNF4-222ENST00000541204 GGT6Q6P531 493 aa16.82■□□□□ 0.28
RNF4-222ENST00000541204 GPRASP1Q5JY77 1395 aa16.82■□□□□ 0.28
RNF4-222ENST00000541204 RNF123Q5XPI4 1314 aa16.81■□□□□ 0.28
RNF4-222ENST00000541204 INO80Q9ULG1 1556 aaPredicted RBP16.8■□□□□ 0.28
RNF4-222ENST00000541204 CHGAP10645 457 aaKnown RBP16.8■□□□□ 0.28
RNF4-222ENST00000541204 CCDC136Q96JN2 1154 aa16.8■□□□□ 0.28
RNF4-222ENST00000541204 RAPGEF3O95398 923 aa16.79■□□□□ 0.28
RNF4-222ENST00000541204 TMF1P82094 1093 aa16.79■□□□□ 0.28
RNF4-222ENST00000541204 PANK3Q9H999 370 aa16.79■□□□□ 0.28
RNF4-222ENST00000541204 UGGT1Q9NYU2 1555 aa16.78■□□□□ 0.28
RNF4-222ENST00000541204 SALL2Q9Y467 1007 aaPredicted RBP16.77■□□□□ 0.28
RNF4-222ENST00000541204 MYBBP1AQ9BQG0 1328 aaKnown RBP16.77■□□□□ 0.28
RNF4-222ENST00000541204 TRPM2O94759 1503 aa16.77■□□□□ 0.27
RNF4-222ENST00000541204 PRDM15P57071 1507 aaPredicted RBP16.76■□□□□ 0.27
RNF4-222ENST00000541204 CLTCL1P53675 1640 aa16.76■□□□□ 0.27
RNF4-222ENST00000541204 CYB5RLQ6IPT4 315 aa16.76■□□□□ 0.27
RNF4-222ENST00000541204 PTPRTO14522 1441 aa16.76■□□□□ 0.27
RNF4-222ENST00000541204 RALBP1Q15311 655 aa16.76■□□□□ 0.27
RNF4-222ENST00000541204 ZNF518AQ6AHZ1 1483 aa16.75■□□□□ 0.27
RNF4-222ENST00000541204 KTN1Q86UP2 1357 aaKnown RBP16.75■□□□□ 0.27
RNF4-222ENST00000541204 PER1O15534 1290 aaPredicted RBP16.75■□□□□ 0.27
RNF4-222ENST00000541204 EIF2AK4Q9P2K8 1649 aaKnown RBP16.75■□□□□ 0.27
RNF4-222ENST00000541204 COL17A1Q9UMD9 1497 aaPredicted RBP16.74■□□□□ 0.27
RNF4-222ENST00000541204 DEPDC5O75140 1603 aa16.74■□□□□ 0.27
RNF4-222ENST00000541204 CFAP70Q5T0N1 1121 aa16.74■□□□□ 0.27
RNF4-222ENST00000541204 LRPPRCP42704 1394 aaKnown RBP16.74■□□□□ 0.27
RNF4-222ENST00000541204 SPHKAPQ2M3C7 1700 aa16.73■□□□□ 0.27
RNF4-222ENST00000541204 TET3O43151 1660 aa16.73■□□□□ 0.27
RNF4-222ENST00000541204 BRD4O60885 1362 aaPredicted RBP16.73■□□□□ 0.27
RNF4-222ENST00000541204 KIDINS220Q9ULH0 1771 aa16.73■□□□□ 0.27
RNF4-222ENST00000541204 ADGRF5Q8IZF2 1346 aa16.73■□□□□ 0.27
RNF4-222ENST00000541204 SENP3Q9H4L4 574 aaPredicted RBP16.72■□□□□ 0.27
RNF4-222ENST00000541204 NOP58Q9Y2X3 529 aaKnown RBP16.71■□□□□ 0.27
RNF4-222ENST00000541204 MROH1Q8NDA8 1641 aa16.71■□□□□ 0.27
RNF4-222ENST00000541204 MADDQ8WXG6 1647 aa16.71■□□□□ 0.26
RNF4-222ENST00000541204 POGZQ7Z3K3 1410 aa16.7■□□□□ 0.26
RNF4-222ENST00000541204 WASHC2CQ9Y4E1 1318 aa16.7■□□□□ 0.26
RNF4-222ENST00000541204 NLRP13Q86W25 1043 aa16.7■□□□□ 0.26
RNF4-222ENST00000541204 VWDEQ8N2E2 1590 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms