RNA–Protein interactions for RNA: ENST00000540896.1

CLTCL1-206, Transcript of clathrin heavy chain like 1, humanhuman

TSL 4

Gene CLTCL1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-206ENST00000540896 TRIM26Q12899 539 aaPredicted RBP10.17□□□□□ -0.78
CLTCL1-206ENST00000540896 MAP3K1Q13233 1512 aa10.17□□□□□ -0.78
CLTCL1-206ENST00000540896 CCDC18Q5T9S5 1454 aa10.17□□□□□ -0.78
CLTCL1-206ENST00000540896 LRRIQ1Q96JM4 1722 aa10.16□□□□□ -0.78
CLTCL1-206ENST00000540896 FAM69CQ0P6D2 419 aa10.16□□□□□ -0.78
CLTCL1-206ENST00000540896 TIAM1Q13009 1591 aa10.16□□□□□ -0.78
CLTCL1-206ENST00000540896 WDR7Q9Y4E6 1490 aa10.16□□□□□ -0.78
CLTCL1-206ENST00000540896 POTEMA6NI47 508 aa10.15□□□□□ -0.78
CLTCL1-206ENST00000540896 PCDH10Q9P2E7 1040 aa10.15□□□□□ -0.78
CLTCL1-206ENST00000540896 ABCC10Q5T3U5 1492 aa10.15□□□□□ -0.78
CLTCL1-206ENST00000540896 LRRC9Q6ZRR7 1453 aa10.15□□□□□ -0.78
CLTCL1-206ENST00000540896 MKRN3Q13064 507 aaKnown RBP10.14□□□□□ -0.79
CLTCL1-206ENST00000540896 PSEN1P49768 467 aa10.13□□□□□ -0.79
CLTCL1-206ENST00000540896 POTEGQ6S5H5 508 aa10.13□□□□□ -0.79
CLTCL1-206ENST00000540896 FAM163AQ96GL9 167 aaPredicted RBP10.13□□□□□ -0.79
CLTCL1-206ENST00000540896 PCGF6Q9BYE7 350 aa10.13□□□□□ -0.79
CLTCL1-206ENST00000540896 DIP2BQ9P265 1576 aa10.13□□□□□ -0.79
CLTCL1-206ENST00000540896 PDAP1Q13442 181 aaKnown RBP10.12□□□□□ -0.79
CLTCL1-206ENST00000540896 KIF13AQ9H1H9 1805 aa10.12□□□□□ -0.79
CLTCL1-206ENST00000540896 GLI2P10070 1586 aa10.1□□□□□ -0.79
CLTCL1-206ENST00000540896 CFAP43Q8NDM7 1665 aa10.1□□□□□ -0.79
CLTCL1-206ENST00000540896 SLAIN1Q8ND83 568 aa10.1□□□□□ -0.79
CLTCL1-206ENST00000540896 TROQ12816 1431 aaPredicted RBP10.09□□□□□ -0.79
CLTCL1-206ENST00000540896 MAGI3Q5TCQ9 1506 aa10.09□□□□□ -0.79
CLTCL1-206ENST00000540896 EHBP1L1Q8N3D4 1523 aa10.08□□□□□ -0.8
CLTCL1-206ENST00000540896 L3MBTL3Q96JM7 780 aaPredicted RBP10.08□□□□□ -0.8
CLTCL1-206ENST00000540896 CD109Q6YHK3 1445 aa10.07□□□□□ -0.8
CLTCL1-206ENST00000540896 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.07□□□□□ -0.8
CLTCL1-206ENST00000540896 KIF14Q15058 1648 aa10.07□□□□□ -0.8
CLTCL1-206ENST00000540896 ABCA9Q8IUA7 1624 aa10.07□□□□□ -0.8
CLTCL1-206ENST00000540896 MAP3K4Q9Y6R4 1608 aa10.07□□□□□ -0.8
CLTCL1-206ENST00000540896 TSPOAP1O95153 1857 aa10.06□□□□□ -0.8
CLTCL1-206ENST00000540896 FAM50AQ14320 339 aaKnown RBP10.06□□□□□ -0.8
CLTCL1-206ENST00000540896 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.06□□□□□ -0.8
CLTCL1-206ENST00000540896 NCOA2Q15596 1464 aa10.05□□□□□ -0.8
CLTCL1-206ENST00000540896 PHLDB1Q86UU1 1377 aa10.05□□□□□ -0.8
CLTCL1-206ENST00000540896 CCNB3Q8WWL7 1395 aa10.05□□□□□ -0.8
CLTCL1-206ENST00000540896 SNPHO15079 494 aa10.05□□□□□ -0.8
CLTCL1-206ENST00000540896 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.05□□□□□ -0.8
CLTCL1-206ENST00000540896 PLSCR2Q9NRY7 297 aa10.04□□□□□ -0.8
CLTCL1-206ENST00000540896 TTC37Q6PGP7 1564 aa10.04□□□□□ -0.8
CLTCL1-206ENST00000540896 ITGAEP38570 1179 aa10.03□□□□□ -0.8
CLTCL1-206ENST00000540896 SUPT6HQ7KZ85 1726 aaKnown RBP10.03□□□□□ -0.8
CLTCL1-206ENST00000540896 CFDP1Q9UEE9 299 aaPredicted RBP10.02□□□□□ -0.81
CLTCL1-206ENST00000540896 ZNF777Q9ULD5 760 aaPredicted RBP10.02□□□□□ -0.81
CLTCL1-206ENST00000540896 TEX14Q8IWB6 1497 aa10.02□□□□□ -0.81
CLTCL1-206ENST00000540896 PPRC1Q5VV67 1664 aaKnown RBP10.02□□□□□ -0.81
CLTCL1-206ENST00000540896 PLCH2O75038 1416 aa10.01□□□□□ -0.81
CLTCL1-206ENST00000540896 MYOM3Q5VTT5 1437 aa10.01□□□□□ -0.81
CLTCL1-206ENST00000540896 PDCD7Q8N8D1 485 aaKnown RBP10.01□□□□□ -0.81
CLTCL1-206ENST00000540896 MYO5CQ9NQX4 1742 aa10.01□□□□□ -0.81
CLTCL1-206ENST00000540896 EFCAB2Q5VUJ9 269 aa10□□□□□ -0.81
CLTCL1-206ENST00000540896 C3orf67Q6ZVT6 689 aa10□□□□□ -0.81
CLTCL1-206ENST00000540896 FGD6Q6ZV73 1430 aa9.99□□□□□ -0.81
CLTCL1-206ENST00000540896 RRBP1Q9P2E9 1410 aaKnown RBP9.99□□□□□ -0.81
CLTCL1-206ENST00000540896 GPATCH8Q9UKJ3 1502 aaKnown RBP9.99□□□□□ -0.81
CLTCL1-206ENST00000540896 LCE2DQ5TA82 110 aaPredicted RBP9.99□□□□□ -0.81
CLTCL1-206ENST00000540896 FANCAO15360 1455 aa9.98□□□□□ -0.81
CLTCL1-206ENST00000540896 ARHGAP5Q13017 1502 aa9.98□□□□□ -0.81
CLTCL1-206ENST00000540896 G3V3G9 751 aa9.98□□□□□ -0.81
CLTCL1-206ENST00000540896 CABP2Q9NPB3 220 aa9.98□□□□□ -0.81
CLTCL1-206ENST00000540896 CDC42BPAQ5VT25 1732 aa9.98□□□□□ -0.81
CLTCL1-206ENST00000540896 ARAP3Q8WWN8 1544 aa9.97□□□□□ -0.81
CLTCL1-206ENST00000540896 CDC42BPBQ9Y5S2 1711 aa9.97□□□□□ -0.81
CLTCL1-206ENST00000540896 AKNAQ7Z591 1439 aa9.97□□□□□ -0.81
CLTCL1-206ENST00000540896 MIA2Q96PC5 1412 aa9.97□□□□□ -0.81
CLTCL1-206ENST00000540896 NEO1Q92859 1461 aa9.97□□□□□ -0.81
CLTCL1-206ENST00000540896 PREX2Q70Z35 1606 aa9.96□□□□□ -0.81
CLTCL1-206ENST00000540896 ILDR1Q86SU0 546 aaPredicted RBP9.96□□□□□ -0.82
CLTCL1-206ENST00000540896 CFAP74Q9C0B2 1584 aa9.96□□□□□ -0.82
CLTCL1-206ENST00000540896 TMEM121BQ9BXQ6 578 aaPredicted RBP9.95□□□□□ -0.82
CLTCL1-206ENST00000540896 ZNF644Q9H582 1327 aaPredicted RBP9.95□□□□□ -0.82
CLTCL1-206ENST00000540896 ITSN2Q9NZM3 1697 aa9.95□□□□□ -0.82
CLTCL1-206ENST00000540896 KDM6BO15054 1643 aa9.94□□□□□ -0.82
CLTCL1-206ENST00000540896 ADGRL1O94910 1474 aa9.94□□□□□ -0.82
CLTCL1-206ENST00000540896 COL17A1Q9UMD9 1497 aaPredicted RBP9.94□□□□□ -0.82
CLTCL1-206ENST00000540896 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.94□□□□□ -0.82
CLTCL1-206ENST00000540896 SCAPERQ9BY12 1400 aa9.93□□□□□ -0.82
CLTCL1-206ENST00000540896 ST18O60284 1047 aa9.93□□□□□ -0.82
CLTCL1-206ENST00000540896 RAPGEF3O95398 923 aa9.93□□□□□ -0.82
CLTCL1-206ENST00000540896 TAOK2Q9UL54 1235 aa9.93□□□□□ -0.82
CLTCL1-206ENST00000540896 RIOK3O14730 519 aaKnown RBP9.92□□□□□ -0.82
CLTCL1-206ENST00000540896 HNRNPMP52272 730 aaKnown RBP eCLIP9.92□□□□□ -0.82
CLTCL1-206ENST00000540896 CHIC2Q9UKJ5 165 aa9.92□□□□□ -0.82
CLTCL1-206ENST00000540896 PTPN23Q9H3S7 1636 aa9.92□□□□□ -0.82
CLTCL1-206ENST00000540896 SAMD9LQ8IVG5 1584 aa9.92□□□□□ -0.82
CLTCL1-206ENST00000540896 DENND4BO75064 1496 aaPredicted RBP9.91□□□□□ -0.82
CLTCL1-206ENST00000540896 TCOF1Q13428 1488 aaKnown RBP9.91□□□□□ -0.82
CLTCL1-206ENST00000540896 TSPY4P0CV99 314 aa9.9□□□□□ -0.82
CLTCL1-206ENST00000540896 TSPY10P0CW01 314 aa9.9□□□□□ -0.82
CLTCL1-206ENST00000540896 RSPH4AQ5TD94 716 aa9.9□□□□□ -0.82
CLTCL1-206ENST00000540896 AFAP1Q8N556 730 aa9.9□□□□□ -0.82
CLTCL1-206ENST00000540896 ARHGEF12Q9NZN5 1544 aa9.9□□□□□ -0.82
CLTCL1-206ENST00000540896 CAMSAP2Q08AD1 1489 aa9.9□□□□□ -0.83
CLTCL1-206ENST00000540896 PLEKHH2Q8IVE3 1493 aa9.9□□□□□ -0.83
CLTCL1-206ENST00000540896 KIAA1107Q9UPP5 1409 aa9.9□□□□□ -0.83
CLTCL1-206ENST00000540896 ABCC1P33527 1531 aa9.89□□□□□ -0.83
CLTCL1-206ENST00000540896 VGFO15240 615 aaPredicted RBP9.89□□□□□ -0.83
CLTCL1-206ENST00000540896 BOLA1Q9Y3E2 137 aa9.89□□□□□ -0.83
CLTCL1-206ENST00000540896 POGZQ7Z3K3 1410 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms